The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP006943	Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome	2245238	326319	335998	2245238		Enterobacteria_phage(66.67%)	9	NA	NA
WP_025216593.1|326319_328029_+	hypothetical protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	31.0	1.5e-14
WP_025216594.1|328018_328918_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_025216595.1|328932_330000_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.2	2.5e-100
WP_025216596.1|330001_330880_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	66.0	7.1e-109
WP_025216597.1|330879_331755_+	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	41.1	2.0e-42
WP_025216598.1|331763_332306_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.1	3.2e-51
WP_025216599.1|332359_333616_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_006252283.1|333864_334080_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_025216600.1|334234_335998_+	DNA primase	NA	A0A1B0WMR3	Flavobacterium_phage	30.3	1.0e-37
>prophage 2
NZ_CP006943	Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome	2245238	918502	970835	2245238	integrase,terminase,head,holin	Mannheimia_phage(38.64%)	67	911041:911055	930029:930043
911041:911055	attL	AGAAACACGCCAAAA	NA	NA	NA	NA
WP_025217121.1|918502_919927_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.7	5.5e-42
WP_025217122.1|920444_921695_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	39.1	2.6e-72
WP_081733963.1|921657_921855_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_025217123.1|922109_922775_-	antirepressor	NA	A0A0M3LQ72	Mannheimia_phage	92.6	2.9e-54
WP_025217124.1|923018_923372_-	DUF2513 domain-containing protein	NA	A0A1W6JNL0	Staphylococcus_phage	33.6	4.8e-08
WP_025217125.1|923763_923952_+	hypothetical protein	NA	A0A0M3LSW7	Mannheimia_phage	80.6	2.4e-22
WP_025217126.1|923986_924280_-	hypothetical protein	NA	A0A249Y2S0	Serratia_phage	39.8	6.4e-06
WP_025217130.1|925258_926101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025217131.1|926124_926889_-	hypothetical protein	NA	A0A0M3LPL3	Mannheimia_phage	72.2	3.0e-39
WP_025217132.1|926905_927103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025217133.1|927166_927961_-	hypothetical protein	NA	A0A2I7RDY8	Vibrio_phage	26.7	4.1e-15
WP_038643393.1|927960_928620_-	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	86.3	4.1e-109
WP_025217135.1|928624_929560_-	hypothetical protein	NA	A0A0M3LNU3	Mannheimia_phage	33.0	1.5e-24
WP_025217136.1|929571_929784_-	hypothetical protein	NA	A0A0M3LQW3	Mannheimia_phage	82.6	6.8e-26
WP_155930844.1|929783_929948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025217137.1|929949_930306_-	hypothetical protein	NA	NA	NA	NA	NA
930029:930043	attR	TTTTGGCGTGTTTCT	NA	NA	NA	NA
WP_155930845.1|930302_930446_-	hypothetical protein	NA	A0A0M3LSX3	Mannheimia_phage	73.9	3.5e-10
WP_025217138.1|931353_931950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006247789.1|931986_932724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006247790.1|932875_933250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025217139.1|933261_933933_-	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	52.5	1.3e-57
WP_025217140.1|934061_934271_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	61.5	3.7e-16
WP_025217141.1|934301_934673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081733964.1|934985_936044_+	replication protein	NA	A0A0M3LQL8	Mannheimia_phage	50.0	1.4e-31
WP_025217142.1|936043_937462_+	AAA family ATPase	NA	Q7Y5V9	Haemophilus_phage	60.9	1.8e-162
WP_025217143.1|937463_937994_+	adenine methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	51.8	4.1e-43
WP_025217144.1|937986_938439_+	DUF1367 family protein	NA	A0A0M3LPN2	Mannheimia_phage	74.7	2.3e-63
WP_025217145.1|938488_938701_+	hypothetical protein	NA	A0A0M3LPA2	Mannheimia_phage	94.3	3.9e-29
WP_025217146.1|939128_939698_+	recombination protein NinG	NA	A0A0M3LTG3	Mannheimia_phage	81.5	1.5e-80
WP_025217147.1|939687_940161_+	hypothetical protein	NA	A0A0M3LPW4	Mannheimia_phage	85.2	5.4e-71
WP_038643080.1|940492_940852_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	35.2	8.1e-11
WP_025217148.1|940893_941793_+	hypothetical protein	NA	A0A126HDE5	Lactococcus_phage	64.2	1.1e-88
WP_167324200.1|941892_942429_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
WP_081733965.1|942463_942835_+	DUF2570 family protein	NA	A0A0M3LPB1	Mannheimia_phage	72.7	5.8e-12
WP_167324194.1|942839_943013_+	hypothetical protein	NA	A0A0M3LSZ0	Mannheimia_phage	89.5	1.1e-24
WP_025217151.1|943180_943678_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	70.4	8.8e-48
WP_025217152.1|943680_945060_+|terminase	phage terminase large subunit	terminase	A0A0D4DCE6	Acinetobacter_phage	62.0	9.0e-151
WP_025217153.1|945125_946640_+	DUF1073 domain-containing protein	NA	I7B6L5	Escherichia_phage	49.0	6.7e-115
WP_025217154.1|946614_947445_+|head	phage head protein	head	H9C0V1	Aeromonas_phage	29.1	9.9e-20
WP_025217155.1|947509_948793_+	DUF2213 domain-containing protein	NA	Q6IWU4	Burkholderia_phage	34.6	6.0e-40
WP_025217156.1|948804_949314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217157.1|949325_950453_+	DUF2184 domain-containing protein	NA	I6ZXX2	Escherichia_phage	46.8	8.3e-78
WP_025217158.1|950523_950898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217159.1|950900_951320_+	DUF4054 domain-containing protein	NA	A0A0S1WH65	Pseudomonas_phage	44.5	7.5e-24
WP_025217160.1|951316_951808_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	31.7	2.0e-07
WP_025217161.1|951810_952515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217162.1|952520_952901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217163.1|952885_953392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217164.1|953407_954886_+	DUF3383 domain-containing protein	NA	K4PB47	Acinetobacter_phage	41.3	1.5e-98
WP_006252050.1|954942_955386_+	hypothetical protein	NA	Q8HAQ5	Burkholderia_phage	35.1	4.5e-11
WP_051410677.1|955515_955872_+	hypothetical protein	NA	A0A0M4REH5	Salmonella_phage	46.2	2.7e-22
WP_025217165.1|955884_956289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167324195.1|956315_956462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217166.1|956461_959140_+	peptidoglycan-binding protein LysM	NA	A0A220NQH4	Acinetobacter_phage	42.0	2.2e-68
WP_025217167.1|959139_959823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217168.1|959825_960929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217169.1|961363_962239_+	antirepressor	NA	Q0H8C7	Salmonella_phage	49.0	1.3e-67
WP_155930846.1|962359_962896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217171.1|962946_963654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217172.1|963656_963953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217173.1|963952_964840_+	hypothetical protein	NA	A0A220NQG9	Acinetobacter_phage	35.8	3.9e-46
WP_025217174.1|964829_965492_+	hypothetical protein	NA	K4HZB6	Acinetobacter_phage	41.7	5.1e-35
WP_025217175.1|965497_965848_+	hypothetical protein	NA	A0A2R3UAP1	Myoviridae_environmental_samples	36.0	1.6e-11
WP_025217176.1|965844_967041_+	hypothetical protein	NA	H9C0X9	Aeromonas_phage	33.6	1.2e-55
WP_025217177.1|967037_967655_+	DUF2612 domain-containing protein	NA	A0A2R3UAM9	Myoviridae_environmental_samples	32.2	1.9e-28
WP_025217179.1|969784_970381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025217180.1|970373_970835_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	60.9	5.8e-54
>prophage 3
NZ_CP006943	Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome	2245238	1425086	1434939	2245238		Chrysochromulina_ericina_virus(16.67%)	10	NA	NA
WP_025217571.1|1425086_1426940_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.9	1.5e-108
WP_025217572.1|1426999_1427632_-	DUF2625 family protein	NA	NA	NA	NA	NA
WP_025217573.1|1427666_1428188_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_025217574.1|1428197_1428521_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	1.7e-23
WP_025217575.1|1428629_1429013_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	75.0	1.3e-51
WP_025217576.1|1429043_1430264_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	29.4	5.0e-28
WP_025217577.1|1430320_1430773_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_025217578.1|1431126_1432467_+	membrane protein	NA	NA	NA	NA	NA
WP_025217579.1|1432530_1433085_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	44.0	1.7e-28
WP_025217580.1|1433097_1434939_-	response regulator	NA	A0A1V0SGX0	Hokovirus	29.8	1.2e-41
