assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	1	1484-1577	1	CRISPRCasFinder	no	cas3	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Unclear	CTAAAACTGAAGAAGTGTTAGAGGA	25	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|405aa|up_0|NZ_CP007028.1_60_1275_+	PRK00149, dnaA, chromosomal replication initiator protein DnaA	NA|246aa|down_0|NZ_CP007028.1_1597_2335_+	pfam00902, TatC, Sec-independent protein translocase protein (TatC)	NA|284aa|down_1|NZ_CP007028.1_2327_3179_+	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|379aa|down_2|NZ_CP007028.1_3164_4301_-	cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes	NA|343aa|down_3|NZ_CP007028.1_4294_5323_-	COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]	NA|107aa|down_4|NZ_CP007028.1_5342_5663_+	pfam03091, CutA1, CutA1 divalent ion tolerance protein	NA|198aa|down_5|NZ_CP007028.1_5631_6225_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|286aa|down_6|NZ_CP007028.1_6221_7079_-	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA|217aa|down_7|NZ_CP007028.1_7071_7722_-	COG1489, SfsA, DNA-binding protein, stimulates sugar fermentation [General function prediction only]	cas3|783aa|down_8|NZ_CP007028.1_7839_10188_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|90aa|down_9|NZ_CP007028.1_10235_10505_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	2	95670-96909	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Orphan	GCTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC	30,29,29,29	0	0	NA	NA	NA:NA:NA:NA	15,18,18,15	18	Orphan	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|76aa|up_0|NZ_CP007028.1_95381_95609_-,NA	NA|213aa|up_9|NZ_CP007028.1_83915_84554_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|767aa|up_8|NZ_CP007028.1_84532_86833_-	PRK07088, PRK07088, ribonucleoside-diphosphate reductase subunit alpha	NA|666aa|up_7|NZ_CP007028.1_87001_88999_+	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]	NA|223aa|up_6|NZ_CP007028.1_88976_89645_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|434aa|up_5|NZ_CP007028.1_89641_90943_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|168aa|up_4|NZ_CP007028.1_90972_91476_+	cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins	NA|400aa|up_3|NZ_CP007028.1_91472_92672_-	PRK04439, PRK04439, methionine adenosyltransferase	NA|252aa|up_2|NZ_CP007028.1_92692_93448_-	pfam01578, Cytochrom_C_asm, Cytochrome C assembly protein	NA|621aa|up_1|NZ_CP007028.1_93458_95321_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|76aa|up_0|NZ_CP007028.1_95381_95609_-	NA	NA|395aa|down_0|NZ_CP007028.1_97328_98513_+	pfam02374, ArsA_ATPase, Anion-transporting ATPase	NA|230aa|down_1|NZ_CP007028.1_98496_99186_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|215aa|down_2|NZ_CP007028.1_99182_99827_-	PRK00023, cmk, (d)CMP kinase	NA|367aa|down_3|NZ_CP007028.1_99826_100927_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|345aa|down_4|NZ_CP007028.1_100895_101930_-	PRK09354, recA, recombinase A; Provisional	NA|95aa|down_5|NZ_CP007028.1_101955_102240_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|133aa|down_6|NZ_CP007028.1_102233_102632_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|163aa|down_7|NZ_CP007028.1_102628_103117_-	COG1719, COG1719, Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]	NA|329aa|down_8|NZ_CP007028.1_103164_104151_-	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|322aa|down_9|NZ_CP007028.1_104147_105113_-	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	3	651865-652564	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	TnpB_regular.1	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Orphan	CTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC	29,29,29	0	0	NA	NA	NA:NA:NA	10,10,10	10	Orphan	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|89aa|up_9|NZ_CP007028.1_644246_644513_-,NA|112aa|up_0|NZ_CP007028.1_651485_651821_-,NA|64aa|down_0|NZ_CP007028.1_652797_652989_+,NA|147aa|down_5|NZ_CP007028.1_658001_658442_+,NA|103aa|down_9|NZ_CP007028.1_660832_661141_-	NA|89aa|up_9|NZ_CP007028.1_644246_644513_-	NA	NA|816aa|up_8|NZ_CP007028.1_644536_646984_+	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|255aa|up_7|NZ_CP007028.1_646970_647735_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|475aa|up_6|NZ_CP007028.1_647731_649156_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|115aa|up_5|NZ_CP007028.1_649185_649530_+	cd18683, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|209aa|up_4|NZ_CP007028.1_649513_650140_+	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)	NA|130aa|up_3|NZ_CP007028.1_650111_650501_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|146aa|up_2|NZ_CP007028.1_650547_650985_+	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|165aa|up_1|NZ_CP007028.1_650988_651483_+	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227)	NA|112aa|up_0|NZ_CP007028.1_651485_651821_-	NA	NA|64aa|down_0|NZ_CP007028.1_652797_652989_+	NA	NA|290aa|down_1|NZ_CP007028.1_653125_653995_+	PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional	NA|456aa|down_2|NZ_CP007028.1_653996_655364_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|793aa|down_3|NZ_CP007028.1_655360_657739_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|80aa|down_4|NZ_CP007028.1_657795_658035_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|147aa|down_5|NZ_CP007028.1_658001_658442_+	NA	NA|207aa|down_6|NZ_CP007028.1_658438_659059_+	COG0603, COG0603, Predicted PP-loop superfamily ATPase [General function prediction only]	NA|251aa|down_7|NZ_CP007028.1_659033_659786_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|284aa|down_8|NZ_CP007028.1_659979_660831_-	PRK11820, PRK11820, YicC family protein	NA|103aa|down_9|NZ_CP007028.1_660832_661141_-	NA
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	4	805983-807143	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas3,cas4,cas1,cas2,cas6	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Type III-D,Type III-B,Type III-A,Type III-C	CTTTCAACTCCACACAGTACATTAGGAAC,GTTCCTAATGTACTGTGTGGAGTTGAAAG,GTTCCTAATGTACTGTGTGGAGTTGAAAG	29,29,29	0	0	NA	NA	NA:NA:NA	17,17,17	17	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|214aa|up_9|NZ_CP007028.1_796735_797377_+,NA|64aa|up_8|NZ_CP007028.1_797380_797572_+,NA|64aa|up_0|NZ_CP007028.1_805557_805749_-,NA|106aa|down_0|NZ_CP007028.1_807594_807912_+,NA|140aa|down_4|NZ_CP007028.1_810768_811188_+	NA|214aa|up_9|NZ_CP007028.1_796735_797377_+	NA	NA|64aa|up_8|NZ_CP007028.1_797380_797572_+	NA	cas7|352aa|up_7|NZ_CP007028.1_797632_798688_+	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family	cas8b2|718aa|up_6|NZ_CP007028.1_798668_800822_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_5|NZ_CP007028.1_800796_803004_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|170aa|up_4|NZ_CP007028.1_803005_803515_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|318aa|up_3|NZ_CP007028.1_803507_804461_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|94aa|up_2|NZ_CP007028.1_804457_804739_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|239aa|up_1|NZ_CP007028.1_804746_805463_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|64aa|up_0|NZ_CP007028.1_805557_805749_-	NA	NA|106aa|down_0|NZ_CP007028.1_807594_807912_+	NA	NA|265aa|down_1|NZ_CP007028.1_807911_808706_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|567aa|down_2|NZ_CP007028.1_808698_810399_+	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|127aa|down_3|NZ_CP007028.1_810395_810776_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|140aa|down_4|NZ_CP007028.1_810768_811188_+	NA	NA|171aa|down_5|NZ_CP007028.1_811177_811690_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|246aa|down_6|NZ_CP007028.1_811792_812530_-	TIGR00056, Probable_ABC_transporter_permease_protein_HI_1086, ABC transport permease subunit	NA|388aa|down_7|NZ_CP007028.1_812513_813677_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|67aa|down_8|NZ_CP007028.1_813681_813882_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|193aa|down_9|NZ_CP007028.1_814157_814736_+	pfam01548, DEDD_Tnp_IS110, Transposase
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	5	859098-860004	5,5,4	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Orphan	CTTTCAACTCCACACGGTACATTAGGAAC,GTTCCTAATGTACCGTGTGGAGTTGAAAG,GTTCCTAATGTACCGTGTGGAGTTGAAAG	29,29,29	0	0	NA	NA	NA:NA:NA	13,13,13	13	Orphan	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|69aa|up_7|NZ_CP007028.1_851669_851876_-,NA|140aa|up_4|NZ_CP007028.1_854070_854490_+,NA|187aa|down_8|NZ_CP007028.1_868924_869485_-	NA|148aa|up_9|NZ_CP007028.1_850708_851152_-	TIGR04488, sulfur_oxidation_protein_SoxY, thiosulfate oxidation carrier protein SoxY	NA|138aa|up_8|NZ_CP007028.1_851163_851577_-	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation	NA|69aa|up_7|NZ_CP007028.1_851669_851876_-	NA	NA|310aa|up_6|NZ_CP007028.1_851876_852806_-	cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII	NA|380aa|up_5|NZ_CP007028.1_852802_853942_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|140aa|up_4|NZ_CP007028.1_854070_854490_+	NA	NA|484aa|up_3|NZ_CP007028.1_854493_855945_+	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family	NA|464aa|up_2|NZ_CP007028.1_855960_857352_+	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	NA|272aa|up_1|NZ_CP007028.1_857299_858115_-	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|145aa|up_0|NZ_CP007028.1_858156_858591_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|367aa|down_0|NZ_CP007028.1_860070_861171_+	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism]	NA|261aa|down_1|NZ_CP007028.1_861170_861953_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|559aa|down_2|NZ_CP007028.1_861974_863651_+	PRK14667, uvrC, excinuclease ABC subunit C; Provisional	NA|81aa|down_3|NZ_CP007028.1_864271_864514_+	pfam01455, HupF_HypC, HupF/HypC family	NA|375aa|down_4|NZ_CP007028.1_864500_865625_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|563aa|down_5|NZ_CP007028.1_865621_867310_+	cd08650, FMT_core_HypX_N, HypX protein, N-terminal hydrolase domain	NA|198aa|down_6|NZ_CP007028.1_867299_867893_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|252aa|down_7|NZ_CP007028.1_868176_868932_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|187aa|down_8|NZ_CP007028.1_868924_869485_-	NA	NA|215aa|down_9|NZ_CP007028.1_869474_870119_-	PRK11909, PRK11909, cobalt transporter CbiM
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	6	906220-906914	6,5,6	CRISPRCasFinder,CRT,PILER-CR	no	TnpB_regular.1,cas3,cas5,cas7,cas8b1,cas6	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Type I-B	GTTTCAATCCCCTATAGGCACTT,GTTTCAATCCCCTATAGGCACTTAATAAAC,GTTTCAATCCCCTATAGGCACTTAATAAAC	23,30,30	0	0	NA	NA	NA:NA:NA	10,10,5	10	TypeI-B	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|98aa|up_7|NZ_CP007028.1_896729_897023_-,NA|168aa|up_4|NZ_CP007028.1_901101_901605_-,NA|273aa|up_2|NZ_CP007028.1_902237_903056_+,NA|95aa|down_6|NZ_CP007028.1_914565_914850_+	NA|249aa|up_9|NZ_CP007028.1_895226_895973_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|255aa|up_8|NZ_CP007028.1_895972_896737_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|98aa|up_7|NZ_CP007028.1_896729_897023_-	NA	NA|881aa|up_6|NZ_CP007028.1_897003_899646_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|453aa|up_5|NZ_CP007028.1_899789_901148_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|168aa|up_4|NZ_CP007028.1_901101_901605_-	NA	NA|37aa|up_3|NZ_CP007028.1_901903_902014_+	pfam13610, DDE_Tnp_IS240, DDE domain	NA|273aa|up_2|NZ_CP007028.1_902237_903056_+	NA	TnpB_regular.1|552aa|up_1|NZ_CP007028.1_903099_904755_+	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|344aa|up_0|NZ_CP007028.1_904881_905913_+	cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria	cas3|753aa|down_0|NZ_CP007028.1_907003_909262_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|245aa|down_1|NZ_CP007028.1_909254_909989_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|298aa|down_2|NZ_CP007028.1_909988_910882_-	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|576aa|down_3|NZ_CP007028.1_910878_912606_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|218aa|down_4|NZ_CP007028.1_912598_913252_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|246aa|down_5|NZ_CP007028.1_913846_914584_+	pfam13614, AAA_31, AAA domain	NA|95aa|down_6|NZ_CP007028.1_914565_914850_+	NA	NA|248aa|down_7|NZ_CP007028.1_915445_916189_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|301aa|down_8|NZ_CP007028.1_916185_917088_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|433aa|down_9|NZ_CP007028.1_917132_918431_-	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	7	913510-913678	7,7	PILER-CR,CRISPRCasFinder	no	TnpB_regular.1,cas3,cas5,cas7,cas8b1,cas6	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Type I-B	TGTTTCAATCCCCTATAGGCACTTAATAAACTAG,GTTTATTAAATGCCTATAGGGGATTGAAAC	34,30	0	0	NA	NA	NA:NA	2,2	2	TypeI-B	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|168aa|up_9|NZ_CP007028.1_901101_901605_-,NA|273aa|up_7|NZ_CP007028.1_902237_903056_+,NA|95aa|down_1|NZ_CP007028.1_914565_914850_+,NA|187aa|down_7|NZ_CP007028.1_921897_922458_-,NA|611aa|down_9|NZ_CP007028.1_923344_925177_+	NA|168aa|up_9|NZ_CP007028.1_901101_901605_-	NA	NA|37aa|up_8|NZ_CP007028.1_901903_902014_+	pfam13610, DDE_Tnp_IS240, DDE domain	NA|273aa|up_7|NZ_CP007028.1_902237_903056_+	NA	TnpB_regular.1|552aa|up_6|NZ_CP007028.1_903099_904755_+	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|344aa|up_5|NZ_CP007028.1_904881_905913_+	cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria	cas3|753aa|up_4|NZ_CP007028.1_907003_909262_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|245aa|up_3|NZ_CP007028.1_909254_909989_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|298aa|up_2|NZ_CP007028.1_909988_910882_-	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b1|576aa|up_1|NZ_CP007028.1_910878_912606_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|218aa|up_0|NZ_CP007028.1_912598_913252_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|246aa|down_0|NZ_CP007028.1_913846_914584_+	pfam13614, AAA_31, AAA domain	NA|95aa|down_1|NZ_CP007028.1_914565_914850_+	NA	NA|248aa|down_2|NZ_CP007028.1_915445_916189_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|301aa|down_3|NZ_CP007028.1_916185_917088_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|433aa|down_4|NZ_CP007028.1_917132_918431_-	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme	NA|456aa|down_5|NZ_CP007028.1_918663_920031_+	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family	NA|559aa|down_6|NZ_CP007028.1_920080_921757_-	PRK14667, uvrC, excinuclease ABC subunit C; Provisional	NA|187aa|down_7|NZ_CP007028.1_921897_922458_-	NA	NA|167aa|down_8|NZ_CP007028.1_922797_923298_+	pfam01724, DUF29, Domain of unknown function DUF29	NA|611aa|down_9|NZ_CP007028.1_923344_925177_+	NA
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	8	1340669-1340766	8	CRISPRCasFinder	no		cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Orphan	GGAGGAGTCGAACCTCCGACCTC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|248aa|up_5|NZ_CP007028.1_1335376_1336120_+,NA|152aa|up_4|NZ_CP007028.1_1336163_1336619_-,NA|162aa|down_0|NZ_CP007028.1_1340821_1341307_-	NA|80aa|up_9|NZ_CP007028.1_1330781_1331021_+	TIGR03011, sulf_tusB_dsrH, sulfur relay protein TusB/DsrH	NA|569aa|up_8|NZ_CP007028.1_1331033_1332740_+	TIGR01812, Fumarate_reductase_flavoprotein_subunit, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup	NA|361aa|up_7|NZ_CP007028.1_1332739_1333822_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|474aa|up_6|NZ_CP007028.1_1333811_1335233_-	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional	NA|248aa|up_5|NZ_CP007028.1_1335376_1336120_+	NA	NA|152aa|up_4|NZ_CP007028.1_1336163_1336619_-	NA	NA|242aa|up_3|NZ_CP007028.1_1336743_1337469_+	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system	NA|537aa|up_2|NZ_CP007028.1_1337431_1339042_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]	NA|248aa|up_1|NZ_CP007028.1_1339038_1339782_-	cd18080, TrmD-like, tRNA-M1G37-methyltransferase TrmD	NA|289aa|up_0|NZ_CP007028.1_1339778_1340645_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|162aa|down_0|NZ_CP007028.1_1340821_1341307_-	NA	NA|265aa|down_1|NZ_CP007028.1_1341299_1342094_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|242aa|down_2|NZ_CP007028.1_1342093_1342819_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|272aa|down_3|NZ_CP007028.1_1342821_1343637_-	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB	NA|132aa|down_4|NZ_CP007028.1_1343659_1344055_-	PRK01236, PRK01236, S-adenosylmethionine decarboxylase proenzyme; Provisional	NA|153aa|down_5|NZ_CP007028.1_1344151_1344610_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|161aa|down_6|NZ_CP007028.1_1344602_1345085_+	COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme metabolism]	NA|147aa|down_7|NZ_CP007028.1_1345081_1345522_-	PRK13380, PRK13380, glycine cleavage system protein H; Provisional	NA|135aa|down_8|NZ_CP007028.1_1345651_1346056_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|267aa|down_9|NZ_CP007028.1_1346039_1346840_-	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]
GCF_000512735.1_ASM51273v1	NZ_CP007028	Thermocrinis ruber strain DSM 23557 chromosome, complete genome	9	1380866-1381425	9,6,8	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	Orphan	CTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC,CTTTCAACTCCACACGGTACATTAGGAAC	29,29,29	0	0	NA	NA	NA:NA:NA	8,8,8	8	Orphan	cas3,csa3,TnpB_regular.1,DinG,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas8b2,cas4,cas1,cas2,cas6,cas5,cas8b1,cas14j,DEDDh	NA|108aa|up_7|NZ_CP007028.1_1374140_1374464_-,NA|50aa|up_5|NZ_CP007028.1_1377146_1377296_+,NA	NA|481aa|up_9|NZ_CP007028.1_1371410_1372853_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|419aa|up_8|NZ_CP007028.1_1372869_1374126_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|108aa|up_7|NZ_CP007028.1_1374140_1374464_-	NA	NA|864aa|up_6|NZ_CP007028.1_1374558_1377150_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|50aa|up_5|NZ_CP007028.1_1377146_1377296_+	NA	NA|96aa|up_4|NZ_CP007028.1_1377268_1377556_+	pfam09876, DUF2103, Predicted metal-binding protein (DUF2103)	NA|186aa|up_3|NZ_CP007028.1_1377545_1378103_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|420aa|up_2|NZ_CP007028.1_1378114_1379374_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|324aa|up_1|NZ_CP007028.1_1379375_1380347_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|158aa|up_0|NZ_CP007028.1_1380340_1380814_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|95aa|down_0|NZ_CP007028.1_1381888_1382173_+	pfam10087, DUF2325, Uncharacterized protein conserved in bacteria (DUF2325)	NA|168aa|down_1|NZ_CP007028.1_1382187_1382691_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|121aa|down_2|NZ_CP007028.1_1382797_1383160_+	pfam06803, DUF1232, Protein of unknown function (DUF1232)	NA|307aa|down_3|NZ_CP007028.1_1383159_1384080_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|185aa|down_4|NZ_CP007028.1_1384092_1384647_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|392aa|down_5|NZ_CP007028.1_1384639_1385815_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|561aa|down_6|NZ_CP007028.1_1385785_1387468_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|353aa|down_7|NZ_CP007028.1_1387511_1388570_+	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|190aa|down_8|NZ_CP007028.1_1388558_1389128_-	pfam02552, CO_dh, CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit	NA|77aa|down_9|NZ_CP007028.1_1389148_1389379_-	COG1144, COG1144, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
