assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000505365.2_ASM50536v2	NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	1	89189-89283	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	1	1	89215-89257	NZ_CP012833.1_89269-89311	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA|31aa|up_5|NZ_CP012833.1_84265_84358_+,NA|160aa|up_4|NZ_CP012833.1_84558_85038_+,NA|38aa|up_2|NZ_CP012833.1_86565_86679_+,NA|155aa|up_0|NZ_CP012833.1_87599_88064_+,NA|115aa|down_3|NZ_CP012833.1_95456_95801_+	NA|314aa|up_9|NZ_CP012833.1_78209_79151_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP012833.1_79193_80096_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP012833.1_80602_81298_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP012833.1_81517_84244_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP012833.1_84265_84358_+	NA	NA|160aa|up_4|NZ_CP012833.1_84558_85038_+	NA	NA|227aa|up_3|NZ_CP012833.1_85266_85947_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP012833.1_86565_86679_+	NA	NA|286aa|up_1|NZ_CP012833.1_86731_87589_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP012833.1_87599_88064_+	NA	NA|206aa|down_0|NZ_CP012833.1_91100_91718_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|344aa|down_1|NZ_CP012833.1_93022_94054_-	COG3943, COG3943, Virulence protein [General function prediction only]	NA|41aa|down_2|NZ_CP012833.1_94141_94264_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|115aa|down_3|NZ_CP012833.1_95456_95801_+	NA	NA|461aa|down_4|NZ_CP012833.1_96499_97882_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_5|NZ_CP012833.1_97893_100212_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_6|NZ_CP012833.1_100314_102024_-	pfam05170, AsmA, AsmA family	NA|464aa|down_7|NZ_CP012833.1_102144_103536_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	cas3|694aa|down_8|NZ_CP012833.1_105003_107085_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_9|NZ_CP012833.1_107090_107780_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional
GCF_000505365.2_ASM50536v2	NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	2	566390-566490	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|448aa|up_9|NZ_CP012833.1_552467_553811_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP012833.1_554438_554891_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP012833.1_554918_556421_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP012833.1_556445_559124_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP012833.1_559344_559746_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP012833.1_559745_560690_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP012833.1_560840_561110_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP012833.1_561351_563487_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP012833.1_563596_564481_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP012833.1_564587_564668_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP012833.1_566703_567948_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP012833.1_568038_569046_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP012833.1_569223_570120_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP012833.1_570110_571106_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP012833.1_571322_571847_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP012833.1_571840_572344_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP012833.1_572330_572648_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP012833.1_572685_573129_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP012833.1_573108_573627_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP012833.1_573757_574393_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_000505365.2_ASM50536v2	NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	3	908258-909567	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,16	21	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|179aa|up_9|NZ_CP012833.1_896801_897338_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP012833.1_897334_897805_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP012833.1_897819_898326_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP012833.1_898345_899119_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP012833.1_899131_901831_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP012833.1_901911_902499_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP012833.1_903107_903908_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP012833.1_904135_905773_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP012833.1_905855_907154_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP012833.1_907289_907961_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP012833.1_909664_910462_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP012833.1_910551_910914_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP012833.1_911349_913149_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP012833.1_913148_914861_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP012833.1_914962_915697_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP012833.1_915909_916863_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP012833.1_917243_919943_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP012833.1_920300_921836_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP012833.1_921852_922455_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP012833.1_922477_923536_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_000505365.2_ASM50536v2	NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4	926273-927765	2,4,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,24,24,9	24	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP012833.1_914962_915697_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP012833.1_915909_916863_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP012833.1_917243_919943_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP012833.1_920300_921836_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP012833.1_921852_922455_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP012833.1_922477_923536_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP012833.1_923545_924271_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP012833.1_924270_924975_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP012833.1_924974_925892_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP012833.1_925894_926188_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP012833.1_927779_928826_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP012833.1_929076_929985_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP012833.1_929994_931434_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP012833.1_931420_932026_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP012833.1_932043_932400_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP012833.1_932590_932902_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP012833.1_932920_933631_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP012833.1_933630_934110_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP012833.1_934106_935156_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP012833.1_935136_935898_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000505365.2_ASM50536v2	NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	5	3297320-3297408	5	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	ATCGTTGGACATCCGTTGGACAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA|60aa|up_9|NZ_CP012833.1_3292252_3292432_-,NA|134aa|up_5|NZ_CP012833.1_3293385_3293787_-,NA|173aa|down_4|NZ_CP012833.1_3299596_3300115_+,NA|101aa|down_6|NZ_CP012833.1_3301025_3301328_+,NA|96aa|down_8|NZ_CP012833.1_3301943_3302231_+	NA|60aa|up_9|NZ_CP012833.1_3292252_3292432_-	NA	NA|68aa|up_8|NZ_CP012833.1_3292412_3292616_-	pfam06322, Phage_NinH, Phage NinH protein	NA|204aa|up_7|NZ_CP012833.1_3292612_3293224_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|59aa|up_6|NZ_CP012833.1_3293216_3293393_-	pfam05810, NinF, NinF protein	NA|134aa|up_5|NZ_CP012833.1_3293385_3293787_-	NA	NA|59aa|up_4|NZ_CP012833.1_3293789_3293966_-	pfam05322, NinE, NINE Protein	NA|58aa|up_3|NZ_CP012833.1_3293932_3294106_-	pfam17466, NinD, Family of unknown function	NA|291aa|up_2|NZ_CP012833.1_3294102_3294975_-	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|147aa|up_1|NZ_CP012833.1_3294971_3295412_-	pfam05772, NinB, NinB protein	NA|479aa|up_0|NZ_CP012833.1_3295488_3296925_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NZ_CP012833.1_3297806_3297953_-	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|94aa|down_1|NZ_CP012833.1_3297987_3298269_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NZ_CP012833.1_3298379_3298595_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_3|NZ_CP012833.1_3298705_3299395_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|173aa|down_4|NZ_CP012833.1_3299596_3300115_+	NA	NA|70aa|down_5|NZ_CP012833.1_3300456_3300666_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|101aa|down_6|NZ_CP012833.1_3301025_3301328_+	NA	NA|167aa|down_7|NZ_CP012833.1_3301409_3301910_+	pfam13392, HNH_3, HNH endonuclease	NA|96aa|down_8|NZ_CP012833.1_3301943_3302231_+	NA	NA|51aa|down_9|NZ_CP012833.1_3302554_3302707_+	pfam02061, Lambda_CIII, Lambda Phage CIII
