The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	1091299	1102561	4651400	transposase,tail	Salmonella_phage(42.86%)	9	NA	NA
WP_023207031.1|1091299_1092460_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.4	2.7e-39
WP_023233676.1|1093005_1093989_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_023233677.1|1093945_1095076_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	33.6	2.4e-40
WP_023233678.1|1095237_1096794_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	62.8	4.3e-165
WP_023233679.1|1096790_1097276_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	85.1	9.4e-71
WP_023233680.1|1097272_1098376_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	87.2	9.7e-180
WP_000980503.1|1098443_1098659_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	70.8	3.6e-22
WP_010989057.1|1099209_1100373_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023233681.1|1100380_1102561_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.5	5.8e-19
>prophage 2
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	1616527	1625707	4651400	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1616527_1617475_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824854.1|1617458_1618190_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1618170_1618278_-	protein YohO	NA	NA	NA	NA	NA
WP_023234557.1|1618337_1619078_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.1	5.1e-100
WP_000272850.1|1619300_1620986_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1620982_1621702_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001598435.1|1621748_1622216_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	91.0	3.0e-74
WP_023234558.1|1622272_1622803_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1622974_1623433_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195340.1|1623673_1625707_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	1910738	1920686	4651400	transposase,tail	Salmonella_phage(36.36%)	11	NA	NA
WP_000444509.1|1910738_1911989_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
WP_000502119.1|1912185_1912644_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_023234320.1|1913520_1913874_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	96.6	4.6e-59
WP_023234319.1|1913874_1915074_+	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	97.5	5.0e-214
WP_023234318.1|1915070_1915751_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	97.8	4.9e-126
WP_077910631.1|1915750_1916533_+|tail	phage tail protein	tail	A0A0M3ULD8	Salmonella_phage	88.4	5.4e-68
WP_023234317.1|1916535_1916967_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	51.8	5.1e-36
WP_024148623.1|1917018_1918104_-	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	31.7	9.9e-28
WP_023234314.1|1918946_1919618_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	60.8	2.8e-81
WP_023234313.1|1919871_1920033_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	63.0	2.9e-08
WP_060710283.1|1920191_1920686_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.4e-13
>prophage 4
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	2543684	2611503	4651400	transposase,head,protease,integrase,tail,lysis	Escherichia_phage(27.87%)	87	2568315:2568329	2612621:2612635
WP_000984498.1|2543684_2544566_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_000502119.1|2544832_2545291_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_001091237.1|2545470_2547519_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000431401.1|2547538_2548225_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_000145727.1|2548322_2548907_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_023234181.1|2548948_2550232_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_001521100.1|2550200_2552834_+	PqiB family protein	NA	NA	NA	NA	NA
WP_023234180.1|2552911_2554351_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_024131167.1|2554468_2554705_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_000457839.1|2554815_2555007_+	YebW family protein	NA	NA	NA	NA	NA
WP_023226864.1|2555025_2555676_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	1.4e-58
WP_001134853.1|2555899_2556064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023234179.1|2556348_2557071_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_000422887.1|2557753_2558149_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
WP_023234178.1|2558477_2558954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000354410.1|2559341_2559761_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012664556.1|2560130_2560400_+	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	3.1e-07
WP_023893518.1|2560565_2560706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024148619.1|2561495_2563916_-	hypothetical protein	NA	Q9MBL9	Phage_Gifsy-2	73.4	3.0e-56
WP_023893383.1|2564034_2564151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074177312.1|2564171_2564531_+|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	39.3	4.9e-16
WP_023234174.1|2565304_2566846_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_023234173.1|2566914_2567769_-	protein YibB	NA	NA	NA	NA	NA
WP_023234172.1|2567918_2568488_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.4	4.2e-94
2568315:2568329	attL	AAATACAGCAATATG	NA	NA	NA	NA
WP_023234171.1|2568477_2569302_-	bacteriophage protein	NA	A0A0M4QWS3	Salmonella_phage	93.4	1.2e-150
WP_023234170.1|2569298_2570750_-|tail	tail fiber protein	tail	E5G6P0	Salmonella_phage	70.2	7.3e-42
WP_022742713.1|2570739_2571342_-	DUF2612 domain-containing protein	NA	H9C0Y0	Aeromonas_phage	43.2	5.9e-30
WP_023234169.1|2571343_2572585_-	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	9.1e-102
WP_001191865.1|2572581_2572938_-	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
WP_000068491.1|2572950_2573628_-	oxidoreductase	NA	A0A077KAY0	Edwardsiella_phage	36.0	1.6e-31
WP_000122818.1|2573608_2574478_-	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
WP_001748486.1|2574474_2574777_-	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	50.5	2.4e-24
WP_001525483.1|2574776_2575487_-	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.6	5.0e-28
WP_023234168.1|2575483_2577655_-	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	67.1	1.4e-49
WP_000228831.1|2577638_2577821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023234167.1|2577862_2578267_-	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	8.2e-20
WP_000016414.1|2578266_2578713_-	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
WP_001748488.1|2578713_2580198_-	DUF3383 domain-containing protein	NA	A0A077KGV4	Edwardsiella_phage	41.0	4.0e-96
WP_023234166.1|2580178_2580724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001748490.1|2580708_2581074_-	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	39.7	8.8e-21
WP_001748491.1|2581070_2581655_-	hypothetical protein	NA	H9C0W2	Aeromonas_phage	30.6	3.2e-17
WP_001748492.1|2581648_2582104_-	DUF4054 domain-containing protein	NA	A0A068CGG9	Acinetobacter_phage	40.8	2.4e-15
WP_001748493.1|2582110_2582458_-	hypothetical protein	NA	H9C0V9	Aeromonas_phage	40.2	3.0e-10
WP_001031913.1|2582461_2583490_-	hypothetical protein	NA	A0A219YBB0	Aeromonas_phage	48.7	2.3e-82
WP_001525451.1|2583489_2583972_-	hypothetical protein	NA	A0A1X9SFC3	Acinetobacter_phage	48.8	1.1e-26
WP_023220053.1|2583973_2585320_-	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	37.2	4.2e-68
WP_000552017.1|2585316_2586006_-|head	head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.6	4.5e-58
WP_023234165.1|2586046_2587567_-	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	43.9	3.1e-104
WP_023234164.1|2587566_2589186_-	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	81.0	7.3e-261
WP_023234163.1|2589188_2589818_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	9.6e-108
WP_001113128.1|2589888_2590071_-	DUF826 domain-containing protein	NA	NA	NA	NA	NA
WP_001080014.1|2590296_2590761_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	81.7	6.3e-56
WP_001534313.1|2590861_2591401_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	71.8	3.4e-77
WP_001525456.1|2591378_2591681_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001270289.1|2591830_2592238_-	type II toxin-antitoxin system HicB family antitoxin	NA	F1C593	Cronobacter_phage	63.0	1.4e-38
WP_023220365.1|2592288_2592465_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0M3LQ86	Mannheimia_phage	60.3	1.2e-12
WP_023892815.1|2592672_2593230_-	ORF6N domain-containing protein	NA	A0A0N7C203	Escherichia_phage	77.1	4.3e-51
WP_021572521.1|2593502_2594057_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	70.5	2.8e-71
WP_000228018.1|2594053_2594344_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	90.6	1.5e-47
WP_021572520.1|2594343_2594943_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	91.5	1.9e-105
WP_049281514.1|2595014_2595266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023234161.1|2595502_2595715_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	61.4	3.3e-12
WP_023234160.1|2595996_2596692_-	hypothetical protein	NA	A0A1U9AJ59	Stx1_converting_phage	52.9	5.7e-45
WP_031606459.1|2596695_2597118_-	hypothetical protein	NA	A0A076G611	Escherichia_phage	64.3	1.5e-11
WP_023234158.1|2597137_2597356_-	DUF4014 family protein	NA	A0A1I9LJM2	Stx_converting_phage	93.1	3.6e-30
WP_023234156.1|2597861_2598284_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	92.8	7.9e-66
WP_021572515.1|2598299_2599061_-	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	89.3	3.3e-118
WP_021572514.1|2599083_2599830_-	ATP-binding protein	NA	V5UQI5	Shigella_phage	80.9	3.6e-114
WP_001533387.1|2599836_2600631_-	hypothetical protein	NA	G9L6A8	Escherichia_phage	65.5	1.2e-41
WP_000702025.1|2600708_2601131_-	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	94.3	3.4e-69
WP_001033914.1|2601127_2601370_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	62.1	2.3e-17
WP_023234155.1|2601466_2601886_+	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	60.6	3.1e-14
WP_000232638.1|2602185_2602404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001419881.1|2602369_2602564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000560227.1|2602959_2603181_+	cell division protein FtsZ	NA	A0A0U2RTC4	Escherichia_phage	95.9	1.2e-36
WP_000245528.1|2603174_2603351_+	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	93.1	9.7e-26
WP_023234154.1|2603425_2603701_+	hypothetical protein	NA	A0A0U2QW85	Escherichia_phage	91.2	1.4e-39
WP_023234153.1|2603801_2606477_+	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	59.6	2.8e-201
WP_000166317.1|2606469_2607279_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	6.8e-106
WP_042853000.1|2607335_2607530_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	96.9	7.6e-32
WP_001356607.1|2607522_2607711_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	97.9	1.6e-18
WP_023234152.1|2607817_2608099_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	42.4	2.6e-12
WP_023234151.1|2608064_2609141_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.7	4.1e-98
WP_000722368.1|2609514_2609868_-	YebY family protein	NA	NA	NA	NA	NA
WP_001579467.1|2609884_2610760_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|2610760_2611135_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|2611272_2611503_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
2612621:2612635	attR	AAATACAGCAATATG	NA	NA	NA	NA
>prophage 5
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	2703842	2754134	4651400	holin,terminase,capsid,protease,integrase,tail,lysis	Salmonella_phage(60.87%)	74	2703540:2703558	2754162:2754180
2703540:2703558	attL	TAAACCTGCATGGACATGA	NA	NA	NA	NA
WP_023234683.1|2703842_2705156_-	hypothetical protein	NA	I6R0Q9	Salmonella_phage	60.8	1.1e-140
WP_023234682.1|2705166_2706126_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	99.7	2.8e-183
WP_023234681.1|2706134_2709314_-|tail	phage tail protein	tail	H6WRW4	Salmonella_phage	93.2	0.0e+00
WP_023234680.1|2709323_2709851_-|tail	tail assembly protein	tail	H6WRW3	Salmonella_phage	84.5	2.4e-67
WP_023234679.1|2709793_2710513_-	C40 family peptidase	NA	H6WRW2	Salmonella_phage	99.1	1.7e-132
WP_023234678.1|2710512_2711217_-|tail	phage minor tail protein L	tail	A0A1V0E5N2	Salmonella_phage	96.2	1.9e-133
WP_023234677.1|2711252_2711600_-|tail	phage tail protein	tail	H6WRV8	Salmonella_phage	95.7	8.2e-61
WP_023234676.1|2711692_2712091_+	hypothetical protein	NA	Q5G8W7	Enterobacteria_phage	97.7	8.5e-70
WP_023234675.1|2712091_2714488_-	hypothetical protein	NA	F1C5E9	Cronobacter_phage	52.8	2.8e-163
WP_023234674.1|2714547_2715015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023234673.1|2715011_2715341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000184444.1|2715649_2716504_+	DNA-binding protein	NA	I6R977	Salmonella_phage	46.0	5.2e-56
WP_023234672.1|2716593_2716896_-	hypothetical protein	NA	H6WRV2	Salmonella_phage	91.0	9.7e-42
WP_117160639.1|2716888_2717239_-	hypothetical protein	NA	H6WRV1	Salmonella_phage	100.0	5.2e-63
WP_001187765.1|2717669_2718458_-	ORF6N domain-containing protein	NA	H6WRU9	Salmonella_phage	100.0	5.2e-127
WP_001028069.1|2718537_2719176_-	hypothetical protein	NA	H6WRU8	Salmonella_phage	100.0	2.1e-118
WP_001154344.1|2719249_2719423_-	hypothetical protein	NA	H6WRU7	Salmonella_phage	100.0	5.8e-23
WP_000049860.1|2719533_2719860_+	Arc family DNA-binding protein	NA	H6WRU6	Salmonella_phage	100.0	3.3e-51
WP_023230837.1|2719880_2720138_-	hypothetical protein	NA	H6WRU5	Salmonella_phage	98.8	1.0e-39
WP_001260076.1|2720058_2720430_+	hypothetical protein	NA	H6WRU4	Salmonella_phage	99.2	1.9e-63
WP_000065269.1|2720451_2721180_-	hypothetical protein	NA	H6WRU3	Salmonella_phage	100.0	3.1e-142
WP_023205069.1|2721401_2722055_-	hypothetical protein	NA	H6WRU2	Salmonella_phage	99.5	1.3e-120
WP_010835559.1|2722099_2722837_-	hypothetical protein	NA	Q5G8X3	Enterobacteria_phage	98.8	2.7e-130
WP_023234671.1|2722852_2723239_-	hypothetical protein	NA	Q5G8X4	Enterobacteria_phage	98.4	2.9e-67
WP_015976786.1|2723235_2723631_-	hypothetical protein	NA	Q5G8X5	Enterobacteria_phage	100.0	7.2e-69
WP_015976785.1|2723638_2724001_-	hypothetical protein	NA	Q5G8X6	Enterobacteria_phage	100.0	9.5e-68
WP_001650231.1|2723993_2724173_-	DUF551 domain-containing protein	NA	Q5G8X7	Enterobacteria_phage	98.3	2.5e-29
WP_000633370.1|2724172_2724574_-	hypothetical protein	NA	Q5G8X8	Enterobacteria_phage	100.0	1.4e-72
WP_001151796.1|2724625_2724814_-	hypothetical protein	NA	Q5G8X9	Enterobacteria_phage	100.0	2.9e-28
WP_000273924.1|2724823_2725900_-	hypothetical protein	NA	Q5G8Y0	Enterobacteria_phage	100.0	1.4e-207
WP_001650234.1|2725917_2726364_-	hypothetical protein	NA	H6WRT3	Salmonella_phage	100.0	3.1e-76
WP_023205066.1|2726376_2727639_-	hypothetical protein	NA	H6WRT2	Salmonella_phage	99.8	8.0e-239
WP_020838512.1|2727654_2728614_-|capsid	minor capsid protein	capsid	H6WRT1	Salmonella_phage	99.7	4.6e-178
WP_020838511.1|2728567_2729920_-	DUF1073 domain-containing protein	NA	H6WRT0	Salmonella_phage	99.6	1.3e-258
WP_000445802.1|2730052_2731372_-|terminase	terminase	terminase	H6WRS9	Salmonella_phage	100.0	1.9e-262
WP_000147264.1|2731355_2731787_-|terminase	terminase small subunit	terminase	A0A1V0E5Q4	Salmonella_phage	100.0	7.6e-72
WP_016048832.1|2732279_2732966_-	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	100.0	1.6e-124
WP_000088937.1|2733178_2733646_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	88.4	6.1e-67
WP_001167376.1|2733642_2734080_-	lysozyme	NA	Q5G8R3	Enterobacteria_phage	91.0	3.6e-69
WP_000738703.1|2734063_2734390_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_001047565.1|2734816_2735590_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	99.6	5.3e-132
WP_000219136.1|2735586_2735766_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	94.9	2.7e-23
WP_000188967.1|2735746_2735950_-	protein ninH	NA	A0A1R3Y5V4	Salmonella_virus	98.5	2.7e-32
WP_023233624.1|2735946_2736558_-	recombination protein NinG	NA	I6R0S7	Salmonella_phage	94.6	4.3e-97
WP_000950996.1|2736550_2736727_-	protein ninF	NA	I6S668	Salmonella_phage	91.4	1.1e-24
WP_000924603.1|2736719_2737121_-	hypothetical protein	NA	G9L690	Escherichia_phage	82.7	8.6e-62
WP_000113772.1|2737123_2737300_-	NinE family protein	NA	I6RSQ2	Salmonella_phage	100.0	4.6e-28
WP_000984218.1|2737266_2737440_-	hypothetical protein	NA	I6S1V2	Salmonella_phage	100.0	5.8e-31
WP_000611490.1|2737436_2738309_-	phosphoadenosine phosphosulfate reductase family protein	NA	I6R0S6	Salmonella_phage	99.3	2.3e-176
WP_000736917.1|2738305_2738746_-	recombination protein NinB	NA	M1FPM8	Enterobacteria_phage	97.9	5.0e-79
WP_023971096.1|2738819_2739098_-	hypothetical protein	NA	Q5G8S7	Enterobacteria_phage	94.6	2.1e-46
WP_023233621.1|2739098_2740979_-	bifunctional DNA primase/helicase	NA	Q5G8S8	Enterobacteria_phage	98.2	0.0e+00
WP_023233620.1|2741086_2741935_-	replication protein	NA	C6ZR51	Salmonella_phage	94.7	8.0e-150
WP_023229430.1|2742115_2742409_-	hypothetical protein	NA	I6RSP4	Salmonella_phage	92.8	1.0e-40
WP_001059982.1|2742539_2742749_-	helix-turn-helix transcriptional regulator	NA	I6S1U2	Salmonella_phage	100.0	2.1e-35
WP_001104736.1|2742858_2743512_+	LexA family transcriptional regulator	NA	I6R0S2	Salmonella_phage	100.0	2.3e-128
WP_000759585.1|2743718_2744738_+	ParA family protein	NA	H2BD62	Pseudomonas_phage	36.0	3.5e-51
WP_000834176.1|2744882_2745086_-	hypothetical protein	NA	A0A2H5BFH9	Salmonella_phage	98.5	5.9e-27
WP_023233618.1|2745442_2745805_+	hypothetical protein	NA	C6ZR44	Salmonella_phage	88.3	1.1e-52
WP_000843522.1|2745821_2746265_+	hypothetical protein	NA	E5AGE5	Erwinia_phage	62.6	3.0e-47
WP_023233617.1|2746353_2746986_+	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	81.1	4.2e-79
WP_001539176.1|2747179_2747353_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
WP_000156731.1|2747333_2747522_+	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_000902089.1|2747511_2747655_+	hypothetical protein	NA	A0A1R3Y5R4	Salmonella_virus	95.7	1.6e-18
WP_042848112.1|2747651_2748359_+	recombinase	NA	I6R0N0	Salmonella_phage	98.3	9.3e-136
WP_042848110.1|2748359_2748818_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	90.3	1.4e-71
WP_001275767.1|2749319_2749604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023216154.1|2749767_2750319_+	phage N-6-adenine-methyltransferase	NA	E5AGF8	Erwinia_phage	60.0	1.8e-57
WP_000200029.1|2750609_2750831_+	TraR/DksA family transcriptional regulator	NA	A0A0N7C211	Escherichia_phage	54.3	1.6e-14
WP_023205219.1|2750830_2751904_+	DNA cytosine methyltransferase	NA	Q858D4	Salmonella_phage	68.2	5.4e-143
WP_000487123.1|2751866_2752109_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_023234529.1|2752118_2752442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001856431.1|2752547_2752793_+	excisionase family protein	NA	Q8W657	Enterobacteria_phage	66.7	9.4e-27
WP_023234528.1|2752838_2754134_+|integrase	site-specific integrase	integrase	Q8W658	Enterobacteria_phage	69.9	1.7e-180
2754162:2754180	attR	TAAACCTGCATGGACATGA	NA	NA	NA	NA
>prophage 6
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	2923579	2930892	4651400	integrase,protease	Ralstonia_phage(16.67%)	7	2918061:2918075	2929301:2929315
2918061:2918075	attL	ATTGCCCGCGCGCTG	NA	NA	NA	NA
WP_048484675.1|2923579_2923900_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	44.7	1.0e-17
WP_001117984.1|2924118_2924316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934064.1|2924528_2926805_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520789.1|2926835_2927156_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2927479_2927701_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125881.1|2927830_2929777_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.0	1.6e-39
2929301:2929315	attR	CAGCGCGCGGGCAAT	NA	NA	NA	NA
WP_023227176.1|2929773_2930892_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 7
NZ_CP012833	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome	4651400	3267605	3308746	4651400	holin,protease,portal,coat,integrase,tail,lysis	Salmonella_phage(63.79%)	60	3267270:3267316	3308760:3308806
3267270:3267316	attL	AATGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
WP_023233549.1|3267605_3267968_+	GtrA family protein	NA	I1TED9	Salmonella_phage	91.7	9.2e-55
WP_023233548.1|3267964_3268882_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	93.1	7.5e-162
WP_023233547.1|3268878_3270669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023233546.1|3270704_3272495_-|tail	tail spike protein	tail	S4TWS4	Salmonella_phage	78.5	1.7e-229
WP_000532175.1|3272630_3272882_+	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	100.0	1.4e-38
WP_001085430.1|3272981_3273161_+	hypothetical protein	NA	B8K1I9	Salmonella_phage	100.0	2.1e-28
WP_000757527.1|3273174_3273540_-	hypothetical protein	NA	E7C9U7	Salmonella_phage	100.0	8.1e-67
WP_000889769.1|3273570_3273900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023233545.1|3273917_3275867_-	hypothetical protein	NA	A0A192Y934	Salmonella_phage	89.0	3.7e-283
WP_023233544.1|3275866_3277249_-	phage DNA ejection protein	NA	A0A192Y834	Salmonella_phage	92.9	1.6e-224
WP_023233543.1|3277259_3277952_-	hypothetical protein	NA	A0A0M4RTU3	Salmonella_phage	95.7	1.1e-104
WP_000627700.1|3277954_3278410_-	DUF2824 family protein	NA	A0A1R3Y5P3	Salmonella_virus	100.0	1.8e-87
WP_023233542.1|3278409_3279111_-	hypothetical protein	NA	A0A0M4QWW6	Salmonella_phage	95.7	1.7e-73
WP_023233541.1|3279114_3280533_-	hypothetical protein	NA	I1TEJ1	Salmonella_phage	98.3	7.3e-273
WP_001166101.1|3280492_3280993_-	packaged DNA stabilization protein p27	NA	I1TEJ0	Salmonella_phage	98.8	5.5e-90
WP_023217184.1|3280976_3281537_-	hypothetical protein	NA	C6ZR11	Salmonella_phage	98.9	1.8e-102
WP_023217185.1|3281577_3282870_-|coat	coat protein	coat	C6ZR10	Salmonella_phage	99.5	1.9e-243
WP_023217186.1|3282869_3283781_-	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	99.7	8.3e-161
WP_023233540.1|3283794_3285972_-|portal	portal protein	portal	A0A1R3Y5N6	Salmonella_virus	99.7	0.0e+00
WP_023217188.1|3285971_3287432_-	hypothetical protein	NA	W6MW26	Pseudomonas_phage	76.5	3.3e-220
WP_001629224.1|3287431_3287890_-	hypothetical protein	NA	A0A2P1MXF5	Escherichia_phage	66.2	3.3e-49
WP_023217189.1|3287902_3288307_-	hypothetical protein	NA	C6ZR73	Salmonella_phage	98.5	9.0e-67
WP_000807793.1|3288309_3288552_-	DUF2560 family protein	NA	A0A1R3Y5V5	Salmonella_virus	100.0	1.7e-36
WP_016048832.1|3288945_3289632_-	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	100.0	1.6e-124
WP_000088937.1|3289844_3290312_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	88.4	6.1e-67
WP_001167376.1|3290308_3290746_-	lysozyme	NA	Q5G8R3	Enterobacteria_phage	91.0	3.6e-69
WP_000738703.1|3290729_3291056_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_001047565.1|3291482_3292256_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	99.6	5.3e-132
WP_000219136.1|3292252_3292432_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	94.9	2.7e-23
WP_000188967.1|3292412_3292616_-	protein ninH	NA	A0A1R3Y5V4	Salmonella_virus	98.5	2.7e-32
WP_023233624.1|3292612_3293224_-	recombination protein NinG	NA	I6R0S7	Salmonella_phage	94.6	4.3e-97
WP_000950996.1|3293216_3293393_-	protein ninF	NA	I6S668	Salmonella_phage	91.4	1.1e-24
WP_000924603.1|3293385_3293787_-	hypothetical protein	NA	G9L690	Escherichia_phage	82.7	8.6e-62
WP_000113772.1|3293789_3293966_-	NinE family protein	NA	I6RSQ2	Salmonella_phage	100.0	4.6e-28
WP_000984218.1|3293932_3294106_-	hypothetical protein	NA	I6S1V2	Salmonella_phage	100.0	5.8e-31
WP_000611490.1|3294102_3294975_-	phosphoadenosine phosphosulfate reductase family protein	NA	I6R0S6	Salmonella_phage	99.3	2.3e-176
WP_000736917.1|3294971_3295412_-	recombination protein NinB	NA	M1FPM8	Enterobacteria_phage	97.9	5.0e-79
WP_000131496.1|3295488_3296925_-	AAA family ATPase	NA	E7C9R5	Salmonella_phage	98.5	4.1e-271
WP_000065658.1|3296914_3297814_-	hypothetical protein	NA	E7C9R4	Salmonella_phage	98.7	3.0e-155
WP_001125981.1|3297806_3297953_-	DUF2740 family protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
WP_001103493.1|3297987_3298269_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	98.9	1.3e-43
WP_000182204.1|3298379_3298595_-	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
WP_000712403.1|3298705_3299395_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	100.0	1.3e-126
WP_000841071.1|3299596_3300115_+	hypothetical protein	NA	I6R9C4	Salmonella_phage	100.0	1.9e-85
WP_000786966.1|3300456_3300666_-	fumarate hydratase FumD	NA	I6R0R9	Salmonella_phage	100.0	2.0e-30
WP_000216186.1|3301025_3301328_+	hypothetical protein	NA	I6S5Z3	Salmonella_phage	94.0	4.5e-47
WP_001083253.1|3301409_3301910_+	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.5	5.2e-32
WP_000713611.1|3301943_3302231_+	hypothetical protein	NA	Q76H36	Enterobacteria_phage	98.9	7.8e-49
WP_001200013.1|3302554_3302707_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	I6R0R7	Salmonella_phage	100.0	2.4e-25
WP_000156731.1|3302687_3302876_+	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_000017617.1|3302865_3303009_+	hypothetical protein	NA	A0A1R3Y5R4	Salmonella_virus	95.7	4.6e-18
WP_052892833.1|3303005_3303713_+	recombinase	NA	I6R0N0	Salmonella_phage	98.3	2.7e-135
WP_048485107.1|3303713_3304220_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	99.4	2.3e-91
WP_023893316.1|3304228_3304777_+	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	98.9	3.0e-105
WP_023234216.1|3304792_3305086_+	DUF2856 family protein	NA	A0A0N7CAQ6	Salmonella_phage	97.9	9.4e-50
WP_023234217.1|3305096_3305267_+	DUF2737 family protein	NA	I6S642	Salmonella_phage	96.4	1.1e-23
WP_023234218.1|3305263_3305881_+	hypothetical protein	NA	Q5G8U6	Enterobacteria_phage	65.9	8.0e-67
WP_023893317.1|3305989_3306349_+	Eaf protein	NA	T1SA95	Salmonella_phage	90.8	8.0e-59
WP_109161052.1|3306405_3306813_+	ead/Ea22-like family protein	NA	C6ZR30	Salmonella_phage	92.1	8.8e-38
WP_023234224.1|3307582_3308746_+|integrase	site-specific integrase	integrase	B9UDL9	Salmonella_phage	97.7	5.2e-224
3308760:3308806	attR	AATGGCGCGCCCTGCAGGATTCGAACCTGCGACCCACGGCTTAGAAG	NA	NA	NA	NA
