assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000504125.1_ASM50412v1	NC_022878	Enterococcus mundtii QU 25, complete genome	1	334157-334245	1	CRISPRCasFinder	no	cas9,cas1,cas2,csn2	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh	Type II-A,Type II-C,Type II-B	GGTTTTAGAGCTATGTTGAATTG	23	0	0	NA	NA	NA	1	1	TypeII-A,TypeII-C,TypeII-B	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh,c2c10_CAS-V-U3	NA|268aa|up_6|NC_022878.1_324789_325593_+,NA|43aa|up_4|NC_022878.1_327428_327557_-,NA|477aa|down_2|NC_022878.1_335365_336796_-	NA|153aa|up_9|NC_022878.1_322534_322993_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|109aa|up_8|NC_022878.1_323014_323341_-	pfam14145, YrhK, YrhK-like protein	NA|378aa|up_7|NC_022878.1_323368_324502_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|268aa|up_6|NC_022878.1_324789_325593_+	NA	NA|565aa|up_5|NC_022878.1_325687_327382_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|43aa|up_4|NC_022878.1_327428_327557_-	NA	cas9|1331aa|up_3|NC_022878.1_328237_332230_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|289aa|up_2|NC_022878.1_332208_333075_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|115aa|up_1|NC_022878.1_333071_333416_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NC_022878.1_333405_334071_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|121aa|down_0|NC_022878.1_334419_334782_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|119aa|down_1|NC_022878.1_334781_335138_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|477aa|down_2|NC_022878.1_335365_336796_-	NA	NA|612aa|down_3|NC_022878.1_337294_339130_+	TIGR03811, tyrosine_decarboxylase, tyrosine decarboxylase, Enterococcus type	NA|485aa|down_4|NC_022878.1_339157_340612_+	TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter	NA|850aa|down_5|NC_022878.1_340765_343315_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|432aa|down_6|NC_022878.1_343455_344751_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|481aa|down_7|NC_022878.1_345074_346517_-	pfam18333, ssDNA_DBD, Non-canonical single-stranded DNA-binding domain	NA|200aa|down_8|NC_022878.1_346633_347233_+	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|151aa|down_9|NC_022878.1_347301_347754_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_000504125.1_ASM50412v1	NC_022878	Enterococcus mundtii QU 25, complete genome	2	663418-663535	2	CRISPRCasFinder	no	cas14j	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh	Unclear	CAGTACGCCCCACCCCACAAGAACAGAAAACCAA	34	0	0	NA	NA	NA	1	1	TypeV	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh,c2c10_CAS-V-U3	NA|137aa|up_9|NC_022878.1_650363_650774_+,NA|198aa|down_4|NC_022878.1_674085_674679_-,NA|209aa|down_9|NC_022878.1_678773_679400_+	NA|137aa|up_9|NC_022878.1_650363_650774_+	NA	NA|358aa|up_8|NC_022878.1_651323_652397_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|181aa|up_7|NC_022878.1_652482_653025_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|556aa|up_6|NC_022878.1_653357_655025_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|115aa|up_5|NC_022878.1_655117_655462_-	pfam13038, DUF3899, Domain of unknown function (DUF3899)	NA|314aa|up_4|NC_022878.1_655542_656484_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|348aa|up_3|NC_022878.1_656484_657528_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|361aa|up_2|NC_022878.1_657533_658616_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|318aa|up_1|NC_022878.1_658590_659544_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	cas14j|336aa|up_0|NC_022878.1_659556_660564_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|151aa|down_0|NC_022878.1_668886_669339_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|274aa|down_1|NC_022878.1_669463_670285_-	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|670aa|down_2|NC_022878.1_670932_672942_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|254aa|down_3|NC_022878.1_673282_674044_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|198aa|down_4|NC_022878.1_674085_674679_-	NA	NA|441aa|down_5|NC_022878.1_674847_676170_+	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter	NA|259aa|down_6|NC_022878.1_676306_677083_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|190aa|down_7|NC_022878.1_677075_677645_+	TIGR00334, Ribonuclease_M5, ribonuclease M5	NA|295aa|down_8|NC_022878.1_677637_678522_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|209aa|down_9|NC_022878.1_678773_679400_+	NA
GCF_000504125.1_ASM50412v1	NC_022878	Enterococcus mundtii QU 25, complete genome	3	821457-821531	3	CRISPRCasFinder	no		cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh	Orphan	GGAGTAAATCAAATGAAAGTAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh,c2c10_CAS-V-U3	NA|191aa|up_9|NC_022878.1_817173_817746_+,NA|63aa|up_8|NC_022878.1_817745_817934_+,NA|65aa|up_7|NC_022878.1_817944_818139_+,NA|72aa|up_4|NC_022878.1_819727_819943_+,NA|74aa|up_2|NC_022878.1_820507_820729_+,NA|119aa|up_1|NC_022878.1_820725_821082_+,NA|66aa|up_0|NC_022878.1_821071_821269_+,NA|81aa|down_2|NC_022878.1_823951_824194_+,NA|98aa|down_9|NC_022878.1_830244_830538_+	NA|191aa|up_9|NC_022878.1_817173_817746_+	NA	NA|63aa|up_8|NC_022878.1_817745_817934_+	NA	NA|65aa|up_7|NC_022878.1_817944_818139_+	NA	NA|132aa|up_6|NC_022878.1_818263_818659_+	pfam09643, YopX, YopX protein	NA|353aa|up_5|NC_022878.1_818655_819714_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|72aa|up_4|NC_022878.1_819727_819943_+	NA	NA|192aa|up_3|NC_022878.1_819935_820511_+	pfam07852, DUF1642, Protein of unknown function (DUF1642)	NA|74aa|up_2|NC_022878.1_820507_820729_+	NA	NA|119aa|up_1|NC_022878.1_820725_821082_+	NA	NA|66aa|up_0|NC_022878.1_821071_821269_+	NA	NA|159aa|down_0|NC_022878.1_821813_822290_+	PRK06811, PRK06811, RNA polymerase factor sigma-70; Validated	NA|357aa|down_1|NC_022878.1_822497_823568_+	pfam13271, DUF4062, Domain of unknown function (DUF4062)	NA|81aa|down_2|NC_022878.1_823951_824194_+	NA	NA|114aa|down_3|NC_022878.1_824180_824522_+	pfam01844, HNH, HNH endonuclease	NA|155aa|down_4|NC_022878.1_824679_825144_+	pfam05119, Terminase_4, Phage terminase, small subunit	NA|581aa|down_5|NC_022878.1_825182_826925_+	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|421aa|down_6|NC_022878.1_827136_828399_+	TIGR01537, portal_protein, phage portal protein, HK97 family	NA|206aa|down_7|NC_022878.1_828337_828955_+	pfam04586, Peptidase_S78, Caudovirus prohead serine protease	NA|405aa|down_8|NC_022878.1_829012_830227_+	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|98aa|down_9|NC_022878.1_830244_830538_+	NA
GCF_000504125.1_ASM50412v1	NC_022878	Enterococcus mundtii QU 25, complete genome	4	1932713-1932795	4	CRISPRCasFinder	no		cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh	Orphan	CCTGGATCAGTAGTTTCTCCGCCACC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh,c2c10_CAS-V-U3	NA,NA	NA|363aa|up_9|NC_022878.1_1920476_1921565_-	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|108aa|up_8|NC_022878.1_1921741_1922065_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|401aa|up_7|NC_022878.1_1922077_1923280_-	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]	NA|511aa|up_6|NC_022878.1_1923279_1924812_-	PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional	NA|364aa|up_5|NC_022878.1_1925106_1926198_-	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system	NA|322aa|up_4|NC_022878.1_1926424_1927390_+	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|483aa|up_3|NC_022878.1_1927398_1928847_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|529aa|up_2|NC_022878.1_1928839_1930426_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|219aa|up_1|NC_022878.1_1930538_1931195_+	pfam02588, YitT_membrane, Uncharacterized 5xTM membrane BCR, YitT family COG1284	NA|103aa|up_0|NC_022878.1_1931532_1931841_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|484aa|down_0|NC_022878.1_1934509_1935961_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|235aa|down_1|NC_022878.1_1936416_1937121_-	PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed	NA|119aa|down_2|NC_022878.1_1937158_1937515_-	pfam03829, PTSIIA_gutA, PTS system glucitol/sorbitol-specific IIA component	NA|336aa|down_3|NC_022878.1_1937531_1938539_-	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component	NA|185aa|down_4|NC_022878.1_1938554_1939109_-	pfam03608, EII-GUT, PTS system enzyme II sorbitol-specific factor	NA|161aa|down_5|NC_022878.1_1939108_1939591_-	pfam06923, GutM, Glucitol operon activator protein (GutM)	NA|621aa|down_6|NC_022878.1_1939587_1941450_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|267aa|down_7|NC_022878.1_1941466_1942267_-	PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional	NA|271aa|down_8|NC_022878.1_1944625_1945438_+	COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]	NA|271aa|down_9|NC_022878.1_1945434_1946247_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated
GCF_000504125.1_ASM50412v1	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	1	76794-76894	1	CRISPRCasFinder	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,RT	Type V-U3	GTTTTAGAACCATATAAAACAGCATGGTTCTCAAAT	36	0	0	NA	NA	NA	1	1	TypeV-U3	cas3,cas14j,cas9,cas1,cas2,csn2,csa3,RT,DinG,DEDDh,c2c10_CAS-V-U3	NA|558aa|up_8|NC_022879.1_68311_69985_+,NA|94aa|up_7|NC_022879.1_69968_70250_+,c2c10_CAS-V-U3|391aa|up_0|NC_022879.1_75512_76685_+,NA|117aa|down_6|NC_022879.1_85812_86163_+,NA|445aa|down_8|NC_022879.1_87385_88720_+	NA|1311aa|up_9|NC_022879.1_64363_68296_+	pfam18796, LPD1, Large polyvalent protein-associated domain 1	NA|558aa|up_8|NC_022879.1_68311_69985_+	NA	NA|94aa|up_7|NC_022879.1_69968_70250_+	NA	NA|129aa|up_6|NC_022879.1_70487_70874_+	pfam05713, MobC, Bacterial mobilisation protein (MobC)	NA|501aa|up_5|NC_022879.1_70875_72378_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|63aa|up_4|NC_022879.1_72443_72632_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|129aa|up_3|NC_022879.1_72666_73053_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|270aa|up_2|NC_022879.1_73045_73855_+	pfam02661, Fic, Fic/DOC family	NA|71aa|up_1|NC_022879.1_74908_75121_+	cd18513, BACK_KLHL3, BACK (BTB and C-terminal Kelch) domain found in Kelch-like protein 3 (KLHL3)	c2c10_CAS-V-U3|391aa|up_0|NC_022879.1_75512_76685_+	NA	NA|92aa|down_0|NC_022879.1_77628_77904_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|269aa|down_1|NC_022879.1_77928_78735_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|347aa|down_2|NC_022879.1_78826_79867_+	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324)	NA|1003aa|down_3|NC_022879.1_79911_82920_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|428aa|down_4|NC_022879.1_82981_84265_+	PRK09863, PRK09863, putative frv operon regulatory protein; Provisional	NA|493aa|down_5|NC_022879.1_84314_85793_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|117aa|down_6|NC_022879.1_85812_86163_+	NA	NA|212aa|down_7|NC_022879.1_86231_86867_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|445aa|down_8|NC_022879.1_87385_88720_+	NA	NA|123aa|down_9|NC_022879.1_89458_89827_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain
