assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000504085.1_ASM50408v1	NC_022792	Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete genome	1	194016-202809	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	Type I-B	GTTTCCATCCCTCTAAGGTTCGATTGAAAC,GTTTCCATCCCTCTAAGGTTCGATTGAAAC,GTTTCCATCCCTCTAAGGTTCGATTGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	132,132,132	132	TypeI-B	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	NA,NA	NA|141aa|up_9|NC_022792.1_181055_181478_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|317aa|up_8|NC_022792.1_182558_183509_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|723aa|up_7|NC_022792.1_183779_185948_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|473aa|up_6|NC_022792.1_185966_187385_-	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria	NA|351aa|up_5|NC_022792.1_187374_188427_-	COG3481, COG3481, Predicted HD-superfamily hydrolase [General function prediction only]	NA|325aa|up_4|NC_022792.1_188523_189498_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|330aa|up_3|NC_022792.1_189485_190475_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|283aa|up_2|NC_022792.1_190483_191332_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|306aa|up_1|NC_022792.1_191334_192252_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|517aa|up_0|NC_022792.1_192304_193855_-	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold	cas3|745aa|down_0|NC_022792.1_203236_205471_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|231aa|down_1|NC_022792.1_205455_206148_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|295aa|down_2|NC_022792.1_206144_207029_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|576aa|down_3|NC_022792.1_207012_208740_-	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas2|88aa|down_4|NC_022792.1_208751_209015_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|328aa|down_5|NC_022792.1_209021_210005_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|164aa|down_6|NC_022792.1_210015_210507_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas6|254aa|down_7|NC_022792.1_210523_211285_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|602aa|down_8|NC_022792.1_211522_213328_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_9|NC_022792.1_213320_215054_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000504085.1_ASM50408v1	NC_022792	Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete genome	2	1130217-1135249	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csa3	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	Type I-A	GTTTCCATCCCTCTAAGGTTCGATTGAAAC,GTTTCAATCGAACCTTAGAGGGATGGAAAC,NNNNNNNNNNNGTTTCAATCGAACCTTAGAGGGATGGAAAC,GTTTCCATCCCTCTAAGGTTCGATTGAAAC	30,30,41,30	0	0	NA	NA	III-A:III-A:III-A:III-A	75,75,75,75	75	Orphan	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	NA|587aa|up_2|NC_022792.1_1125955_1127716_+,NA	NA|296aa|up_9|NC_022792.1_1118625_1119513_+	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|276aa|up_8|NC_022792.1_1119509_1120337_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|278aa|up_7|NC_022792.1_1120512_1121346_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|387aa|up_6|NC_022792.1_1121348_1122509_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|498aa|up_5|NC_022792.1_1122509_1124003_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|390aa|up_4|NC_022792.1_1123999_1125169_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|190aa|up_3|NC_022792.1_1125248_1125818_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|587aa|up_2|NC_022792.1_1125955_1127716_+	NA	NA|418aa|up_1|NC_022792.1_1127717_1128971_-	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters	NA|248aa|up_0|NC_022792.1_1128986_1129730_-	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain	NA|585aa|down_0|NC_022792.1_1135314_1137069_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|836aa|down_1|NC_022792.1_1137069_1139577_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|162aa|down_2|NC_022792.1_1139927_1140413_-	pfam18423, zf_CopZ, Zinc binding domain	NA|155aa|down_3|NC_022792.1_1140570_1141035_-	PRK14786, PRK14786, lipoprotein signal peptidase; Provisional	NA|791aa|down_4|NC_022792.1_1141121_1143494_-	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	csa3|125aa|down_5|NC_022792.1_1143507_1143882_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|523aa|down_6|NC_022792.1_1144381_1145950_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|480aa|down_7|NC_022792.1_1147376_1148816_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|404aa|down_8|NC_022792.1_1148812_1150024_+	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|124aa|down_9|NC_022792.1_1150026_1150398_+	pfam07892, DUF1667, Protein of unknown function (DUF1667)
GCF_000504085.1_ASM50408v1	NC_022792	Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete genome	3	1146036-1147255	4,3,3	PILER-CR,CRISPRCasFinder,CRT	no	csa3	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	Type I-A	GTTTCCATCCCTCTAAGGTTCGATTGAAAC,GTTTCAATCGAACCTTAGAGGGATGGAAAC,GTTTCAATCGAACCTTAGAGGGATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	12,18,18	18	Orphan	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	NA|587aa|up_9|NC_022792.1_1125955_1127716_+,NA|365aa|down_8|NC_022792.1_1155940_1157035_+	NA|587aa|up_9|NC_022792.1_1125955_1127716_+	NA	NA|418aa|up_8|NC_022792.1_1127717_1128971_-	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters	NA|248aa|up_7|NC_022792.1_1128986_1129730_-	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain	NA|585aa|up_6|NC_022792.1_1135314_1137069_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|836aa|up_5|NC_022792.1_1137069_1139577_+	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|162aa|up_4|NC_022792.1_1139927_1140413_-	pfam18423, zf_CopZ, Zinc binding domain	NA|155aa|up_3|NC_022792.1_1140570_1141035_-	PRK14786, PRK14786, lipoprotein signal peptidase; Provisional	NA|791aa|up_2|NC_022792.1_1141121_1143494_-	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell	csa3|125aa|up_1|NC_022792.1_1143507_1143882_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|523aa|up_0|NC_022792.1_1144381_1145950_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|480aa|down_0|NC_022792.1_1147376_1148816_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|404aa|down_1|NC_022792.1_1148812_1150024_+	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|124aa|down_2|NC_022792.1_1150026_1150398_+	pfam07892, DUF1667, Protein of unknown function (DUF1667)	NA|186aa|down_3|NC_022792.1_1150389_1150947_-	pfam04309, G3P_antiterm, Glycerol-3-phosphate responsive antiterminator	NA|500aa|down_4|NC_022792.1_1150943_1152443_-	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|599aa|down_5|NC_022792.1_1152455_1154252_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|228aa|down_6|NC_022792.1_1154469_1155153_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|248aa|down_7|NC_022792.1_1155163_1155907_+	pfam14343, PrcB_C, PrcB C-terminal	NA|365aa|down_8|NC_022792.1_1155940_1157035_+	NA	NA|320aa|down_9|NC_022792.1_1157027_1157987_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
GCF_000504085.1_ASM50408v1	NC_022792	Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete genome	4	1787010-1787114	4	CRISPRCasFinder	no		cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	Orphan	AGTCCGAAAGAAGGTCCTCTCTGAAAGAGATGG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,DEDDh,cas3HD,csa3,cmr1gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,WYL,cas14k,cas9	NA|64aa|up_0|NC_022792.1_1786631_1786823_-,NA	NA|349aa|up_9|NC_022792.1_1776689_1777736_+	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily	NA|490aa|up_8|NC_022792.1_1777803_1779273_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|333aa|up_7|NC_022792.1_1779281_1780280_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|401aa|up_6|NC_022792.1_1780298_1781501_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|346aa|up_5|NC_022792.1_1781515_1782553_+	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed	NA|303aa|up_4|NC_022792.1_1782571_1783480_+	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	NA|334aa|up_3|NC_022792.1_1783476_1784478_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|377aa|up_2|NC_022792.1_1784495_1785626_+	cd08210, RLP_RrRLP, Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R	NA|308aa|up_1|NC_022792.1_1785655_1786579_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|64aa|up_0|NC_022792.1_1786631_1786823_-	NA	NA|276aa|down_0|NC_022792.1_1787187_1788015_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|318aa|down_1|NC_022792.1_1788024_1788978_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|498aa|down_2|NC_022792.1_1788974_1790468_-	cd08516, PBP2_NikA_DppA_OppA_like_11, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|250aa|down_3|NC_022792.1_1790490_1791240_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|300aa|down_4|NC_022792.1_1791293_1792193_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|503aa|down_5|NC_022792.1_1792189_1793698_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|267aa|down_6|NC_022792.1_1793818_1794619_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|317aa|down_7|NC_022792.1_1794615_1795566_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|465aa|down_8|NC_022792.1_1795558_1796953_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|281aa|down_9|NC_022792.1_1796942_1797785_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
