assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	1	224988-225074	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	TGATAGGGCCTGAAGCGATCATGGTCTC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|253aa|up_3|NC_022997.1_222688_223447_+,NA|91aa|up_0|NC_022997.1_224612_224885_+,NA|141aa|down_4|NC_022997.1_230252_230675_+,NA|144aa|down_5|NC_022997.1_230775_231207_+,NA|200aa|down_6|NC_022997.1_231308_231908_+,NA|90aa|down_9|NC_022997.1_234517_234787_+	NA|574aa|up_9|NC_022997.1_216424_218146_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|192aa|up_8|NC_022997.1_218200_218776_-	PRK03757, PRK03757, YceI family protein	NA|184aa|up_7|NC_022997.1_218817_219369_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|105aa|up_6|NC_022997.1_219615_219930_-	pfam02956, TT_ORF1, TT viral orf 1	NA|511aa|up_5|NC_022997.1_220372_221905_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|132aa|up_4|NC_022997.1_222057_222453_+	cd16358, GlxI_Ni, Glyoxalase I that uses Ni(++) as cofactor	NA|253aa|up_3|NC_022997.1_222688_223447_+	NA	NA|144aa|up_2|NC_022997.1_223625_224057_+	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins	NA|77aa|up_1|NC_022997.1_224297_224528_+	pfam06620, DUF1150, Protein of unknown function (DUF1150)	NA|91aa|up_0|NC_022997.1_224612_224885_+	NA	NA|237aa|down_0|NC_022997.1_225138_225849_-	PRK13583, hisG, ATP phosphoribosyltransferase	NA|393aa|down_1|NC_022997.1_225845_227024_-	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional	NA|509aa|down_2|NC_022997.1_227352_228879_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|405aa|down_3|NC_022997.1_229029_230244_+	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]	NA|141aa|down_4|NC_022997.1_230252_230675_+	NA	NA|144aa|down_5|NC_022997.1_230775_231207_+	NA	NA|200aa|down_6|NC_022997.1_231308_231908_+	NA	NA|271aa|down_7|NC_022997.1_231963_232776_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|412aa|down_8|NC_022997.1_233008_234244_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|90aa|down_9|NC_022997.1_234517_234787_+	NA
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	2	406065-406150	2	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Unclear	TTTAGCCAGACCGATGATTCACGCTTC	27	1	1	406092-406123	NC_022997.1_529846-529877	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|175aa|up_4|NC_022997.1_401941_402466_+,NA	NA|219aa|up_9|NC_022997.1_395705_396362_-	PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional	NA|910aa|up_8|NC_022997.1_396618_399348_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|249aa|up_7|NC_022997.1_399502_400249_+	pfam06764, DUF1223, Protein of unknown function (DUF1223)	NA|327aa|up_6|NC_022997.1_400266_401247_-	cd08241, QOR1, Quinone oxidoreductase (QOR)	NA|194aa|up_5|NC_022997.1_401318_401900_+	cd18098, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|175aa|up_4|NC_022997.1_401941_402466_+	NA	NA|217aa|up_3|NC_022997.1_402646_403297_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|374aa|up_2|NC_022997.1_403302_404424_-	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|247aa|up_1|NC_022997.1_404451_405192_-	pfam04280, Tim44, Tim44-like domain	NA|169aa|up_0|NC_022997.1_405544_406051_+	pfam02556, SecB, Preprotein translocase subunit SecB	DEDDh|242aa|down_0|NC_022997.1_406179_406905_-	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|207aa|down_1|NC_022997.1_406922_407543_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|282aa|down_2|NC_022997.1_407539_408385_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|205aa|down_3|NC_022997.1_408381_408996_-	PRK02478, PRK02478, Maf-like protein; Reviewed	NA|294aa|down_4|NC_022997.1_408985_409867_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|355aa|down_5|NC_022997.1_410279_411344_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|177aa|down_6|NC_022997.1_411373_411904_+	pfam03653, UPF0093, Uncharacterized protein family (UPF0093)	NA|422aa|down_7|NC_022997.1_412134_413400_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|306aa|down_8|NC_022997.1_413469_414387_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|677aa|down_9|NC_022997.1_414570_416601_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	3	677261-677343	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	TAGGGCCTGAAGCGATCATGGTCT	24	1	2	677285-677319|677285-677319	NC_022997.1_2005169-2005203|NC_022997.1_2670937-2670971	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA,NA	NA|133aa|up_9|NC_022997.1_668669_669068_+	PRK12509, PRK12509, Na+/H+ antiporter subunit B	NA|128aa|up_8|NC_022997.1_669069_669453_+	PRK12658, PRK12658, Na+/H+ antiporter subunit C	NA|516aa|up_7|NC_022997.1_669452_671000_+	PRK12663, PRK12663, Na+/H+ antiporter subunit D	NA|110aa|up_6|NC_022997.1_670996_671326_+	PRK12651, PRK12651, Na+/H+ antiporter subunit E	NA|102aa|up_5|NC_022997.1_671322_671628_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|127aa|up_4|NC_022997.1_671624_672005_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|459aa|up_3|NC_022997.1_672085_673462_-	cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)	NA|283aa|up_2|NC_022997.1_674077_674926_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|328aa|up_1|NC_022997.1_675468_676452_+	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs	NA|221aa|up_0|NC_022997.1_676511_677174_-	sd00006, TPR, Tetratricopeptide repeat	NA|426aa|down_0|NC_022997.1_677471_678749_+	PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional	NA|196aa|down_1|NC_022997.1_678782_679370_+	PRK00601, dut, dUTP diphosphatase	NA|333aa|down_2|NC_022997.1_679529_680528_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|476aa|down_3|NC_022997.1_680564_681992_+	sd00010, SLR, Sel1-like repeat	NA|402aa|down_4|NC_022997.1_682180_683386_-	PLN02409, PLN02409, serine--glyoxylate aminotransaminase	NA|266aa|down_5|NC_022997.1_683604_684402_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|421aa|down_6|NC_022997.1_684609_685872_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|754aa|down_7|NC_022997.1_686039_688301_+	COG3605, PtsP, Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]	NA|362aa|down_8|NC_022997.1_688494_689580_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|300aa|down_9|NC_022997.1_689569_690469_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	4	756648-756861	1	PILER-CR	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	CCGAAAGGTGAGAAATTGGGCGG	23	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|187aa|up_8|NC_022997.1_742045_742606_+,NA|214aa|up_2|NC_022997.1_754741_755383_+,NA|96aa|up_0|NC_022997.1_755848_756136_+,NA|76aa|down_1|NC_022997.1_758784_759012_+,NA|119aa|down_5|NC_022997.1_761960_762317_+,NA|59aa|down_6|NC_022997.1_762440_762617_+,NA|111aa|down_8|NC_022997.1_765258_765591_+,NA|169aa|down_9|NC_022997.1_765677_766184_+	NA|255aa|up_9|NC_022997.1_740982_741747_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|187aa|up_8|NC_022997.1_742045_742606_+	NA	NA|952aa|up_7|NC_022997.1_742680_745536_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|331aa|up_6|NC_022997.1_746644_747637_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|363aa|up_5|NC_022997.1_747733_748822_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|1050aa|up_4|NC_022997.1_748919_752069_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|429aa|up_3|NC_022997.1_753331_754618_+	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|214aa|up_2|NC_022997.1_754741_755383_+	NA	NA|71aa|up_1|NC_022997.1_755550_755763_+	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA)	NA|96aa|up_0|NC_022997.1_755848_756136_+	NA	NA|326aa|down_0|NC_022997.1_756930_757908_+	pfam01051, Rep_3, Initiator Replication protein	NA|76aa|down_1|NC_022997.1_758784_759012_+	NA	NA|452aa|down_2|NC_022997.1_759008_760364_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|104aa|down_3|NC_022997.1_760360_760672_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|223aa|down_4|NC_022997.1_761289_761958_+	cd02042, ParAB_family, partition proteins ParAB family	NA|119aa|down_5|NC_022997.1_761960_762317_+	NA	NA|59aa|down_6|NC_022997.1_762440_762617_+	NA	NA|817aa|down_7|NC_022997.1_762613_765064_+	pfam13476, AAA_23, AAA domain	NA|111aa|down_8|NC_022997.1_765258_765591_+	NA	NA|169aa|down_9|NC_022997.1_765677_766184_+	NA
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	5	1447293-1449615	4,1,2,3,4,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,CRT	no	cas2,cas1,cas4,cas7b,cas8c,cas5,cas3	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Type I-U,Type I-C, Type I-U?	GTTTCTATCCACGCCTCCGCGCGGGAGGCGAC,GTTTCTATCCACGCCTCCGCGCGGGAGGCGAC,GTTTCTATCCACGCCTCCGCGCGGGAGGCGACT,GTTTCTATCCACGCCTCCGCGCGGGAGGCGAC,GTTTCTATCCACGCCTCCGCGCGGGAGGCGAC,GTTTCTATCCACGCCTCCGCGCGGGAGGCGAC	32,32,33,32,32,32	0	0	NA	NA	NA:NA:NA:NA:NA:NA	34,34,29,29,29,34	34	TypeI-U,TypeI-C,TypeI-U?	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|219aa|up_7|NC_022997.1_1441796_1442453_-,NA|156aa|up_6|NC_022997.1_1442449_1442917_-,NA|234aa|up_4|NC_022997.1_1443740_1444442_-,NA|222aa|up_3|NC_022997.1_1444456_1445122_-,NA|67aa|up_0|NC_022997.1_1447038_1447239_+,NA|65aa|down_7|NC_022997.1_1458831_1459026_-,NA|89aa|down_8|NC_022997.1_1459211_1459478_+,NA|116aa|down_9|NC_022997.1_1459498_1459846_+	NA|106aa|up_9|NC_022997.1_1440731_1441049_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|203aa|up_8|NC_022997.1_1441178_1441787_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|219aa|up_7|NC_022997.1_1441796_1442453_-	NA	NA|156aa|up_6|NC_022997.1_1442449_1442917_-	NA	NA|71aa|up_5|NC_022997.1_1443414_1443627_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|234aa|up_4|NC_022997.1_1443740_1444442_-	NA	NA|222aa|up_3|NC_022997.1_1444456_1445122_-	NA	NA|294aa|up_2|NC_022997.1_1445111_1445993_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|66aa|up_1|NC_022997.1_1446062_1446260_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|67aa|up_0|NC_022997.1_1447038_1447239_+	NA	cas2|97aa|down_0|NC_022997.1_1449809_1450100_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NC_022997.1_1450128_1451163_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|down_2|NC_022997.1_1451159_1451819_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7b|316aa|down_3|NC_022997.1_1451835_1452783_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|583aa|down_4|NC_022997.1_1452779_1454528_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|232aa|down_5|NC_022997.1_1454805_1455501_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|779aa|down_6|NC_022997.1_1455573_1457910_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|65aa|down_7|NC_022997.1_1458831_1459026_-	NA	NA|89aa|down_8|NC_022997.1_1459211_1459478_+	NA	NA|116aa|down_9|NC_022997.1_1459498_1459846_+	NA
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	6	1473161-1473253	5	CRISPRCasFinder	no	cas5,cas3	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Unclear	TTCAGGCTGATAGGGCCTGAAACGATCATGGTCT	34	1	2	1473195-1473219|1473195-1473219	NC_022997.1_2414476-2414452|NC_022997.1_595157-595181	NA	1	1	Unclear	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|65aa|up_9|NC_022997.1_1458831_1459026_-,NA|89aa|up_8|NC_022997.1_1459211_1459478_+,NA|116aa|up_7|NC_022997.1_1459498_1459846_+,NA|452aa|up_0|NC_022997.1_1471739_1473095_+,NA	NA|65aa|up_9|NC_022997.1_1458831_1459026_-	NA	NA|89aa|up_8|NC_022997.1_1459211_1459478_+	NA	NA|116aa|up_7|NC_022997.1_1459498_1459846_+	NA	NA|873aa|up_6|NC_022997.1_1459898_1462517_-	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|477aa|up_5|NC_022997.1_1463152_1464583_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|428aa|up_4|NC_022997.1_1464589_1465873_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|890aa|up_3|NC_022997.1_1465926_1468596_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|580aa|up_2|NC_022997.1_1468699_1470439_-	cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase)	NA|206aa|up_1|NC_022997.1_1470498_1471116_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|452aa|up_0|NC_022997.1_1471739_1473095_+	NA	NA|146aa|down_0|NC_022997.1_1473481_1473919_-	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|474aa|down_1|NC_022997.1_1474128_1475550_-	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|266aa|down_2|NC_022997.1_1475816_1476614_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|255aa|down_3|NC_022997.1_1476871_1477636_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|654aa|down_4|NC_022997.1_1477688_1479650_+	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|488aa|down_5|NC_022997.1_1479723_1481187_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|790aa|down_6|NC_022997.1_1481606_1483976_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|151aa|down_7|NC_022997.1_1483979_1484432_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|550aa|down_8|NC_022997.1_1484525_1486175_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|255aa|down_9|NC_022997.1_1486324_1487089_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	7	2508782-2508926	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	GCCTACGCAGAATTGGTCGCGCCC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|204aa|up_6|NC_022997.1_2502877_2503489_+,NA|92aa|up_1|NC_022997.1_2507478_2507754_+,NA|278aa|down_0|NC_022997.1_2509266_2510100_+,NA|139aa|down_2|NC_022997.1_2513138_2513555_+,NA|143aa|down_3|NC_022997.1_2513559_2513988_-,NA|89aa|down_6|NC_022997.1_2515912_2516179_+,NA|104aa|down_7|NC_022997.1_2516175_2516487_+,NA|205aa|down_8|NC_022997.1_2516604_2517219_+	NA|238aa|up_9|NC_022997.1_2499678_2500392_+	COG3577, COG3577, Predicted aspartyl protease [General function prediction only]	NA|191aa|up_8|NC_022997.1_2500474_2501047_+	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family	NA|500aa|up_7|NC_022997.1_2501251_2502751_+	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|204aa|up_6|NC_022997.1_2502877_2503489_+	NA	NA|276aa|up_5|NC_022997.1_2503501_2504329_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|350aa|up_4|NC_022997.1_2504344_2505394_-	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|359aa|up_3|NC_022997.1_2505548_2506625_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|209aa|up_2|NC_022997.1_2506814_2507441_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|92aa|up_1|NC_022997.1_2507478_2507754_+	NA	NA|342aa|up_0|NC_022997.1_2507750_2508776_+	pfam04796, RepA_C, Plasmid encoded RepA protein	NA|278aa|down_0|NC_022997.1_2509266_2510100_+	NA	NA|654aa|down_1|NC_022997.1_2510510_2512472_-	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|139aa|down_2|NC_022997.1_2513138_2513555_+	NA	NA|143aa|down_3|NC_022997.1_2513559_2513988_-	NA	NA|118aa|down_4|NC_022997.1_2514435_2514789_+	pfam05713, MobC, Bacterial mobilisation protein (MobC)	NA|361aa|down_5|NC_022997.1_2514792_2515875_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|89aa|down_6|NC_022997.1_2515912_2516179_+	NA	NA|104aa|down_7|NC_022997.1_2516175_2516487_+	NA	NA|205aa|down_8|NC_022997.1_2516604_2517219_+	NA	NA|506aa|down_9|NC_022997.1_2517972_2519490_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	8	2622313-2622428	7	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	CGTGCTGGAAGCACGCCTCCGGCATGAA	28	1	2	2622341-2622400|2622341-2622400	NC_022997.1_2381606-2381547|NC_022997.1_3476055-3476114	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|198aa|up_3|NC_022997.1_2617561_2618155_-,NA|64aa|down_0|NC_022997.1_2622559_2622751_-,NA|117aa|down_5|NC_022997.1_2625301_2625652_+,NA|185aa|down_7|NC_022997.1_2626238_2626793_-,NA|111aa|down_9|NC_022997.1_2627562_2627895_+	NA|102aa|up_9|NC_022997.1_2611824_2612130_-	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|197aa|up_8|NC_022997.1_2612150_2612741_-	TIGR02215, conserved_hypothetical_protein, phage conserved hypothetical protein, phiE125 gp8 family	NA|415aa|up_7|NC_022997.1_2612942_2614187_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|240aa|up_6|NC_022997.1_2614221_2614941_-	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family	NA|423aa|up_5|NC_022997.1_2615007_2616276_-	COG4695, COG4695, Phage-related protein [Function unknown]	NA|451aa|up_4|NC_022997.1_2616303_2617656_-	COG5323, COG5323, Uncharacterized conserved protein [Function unknown]	NA|198aa|up_3|NC_022997.1_2617561_2618155_-	NA	NA|745aa|up_2|NC_022997.1_2618578_2620813_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|223aa|up_1|NC_022997.1_2620819_2621488_+	COG5402, COG5402, Uncharacterized conserved protein [Function unknown]	NA|207aa|up_0|NC_022997.1_2621490_2622111_+	COG5436, COG5436, Predicted integral membrane protein [Function unknown]	NA|64aa|down_0|NC_022997.1_2622559_2622751_-	NA	NA|94aa|down_1|NC_022997.1_2623219_2623501_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|100aa|down_2|NC_022997.1_2623516_2623816_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	NA|116aa|down_3|NC_022997.1_2623910_2624258_-	pfam07372, DUF1491, Protein of unknown function (DUF1491)	NA|232aa|down_4|NC_022997.1_2624314_2625010_-	TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA	NA|117aa|down_5|NC_022997.1_2625301_2625652_+	NA	NA|143aa|down_6|NC_022997.1_2625794_2626223_+	pfam02657, SufE, Fe-S metabolism associated domain	NA|185aa|down_7|NC_022997.1_2626238_2626793_-	NA	NA|166aa|down_8|NC_022997.1_2626859_2627357_-	cd06571, Bac_DnaA_C, C-terminal domain of bacterial DnaA proteins	NA|111aa|down_9|NC_022997.1_2627562_2627895_+	NA
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	9	2786449-2786538	8	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	GTCCGCCCCCTTGCGCGCGGGGGGCAGAT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|114aa|up_8|NC_022997.1_2777924_2778266_+,NA|78aa|up_5|NC_022997.1_2781756_2781990_-,NA|182aa|down_2|NC_022997.1_2790641_2791187_+,NA|129aa|down_4|NC_022997.1_2792072_2792459_+,NA|65aa|down_5|NC_022997.1_2792599_2792794_+	NA|231aa|up_9|NC_022997.1_2776952_2777645_-	pfam06707, DUF1194, Protein of unknown function (DUF1194)	NA|114aa|up_8|NC_022997.1_2777924_2778266_+	NA	NA|742aa|up_7|NC_022997.1_2778366_2780592_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|334aa|up_6|NC_022997.1_2780669_2781671_+	pfam07987, DUF1775, Domain of unkown function (DUF1775)	NA|78aa|up_5|NC_022997.1_2781756_2781990_-	NA	NA|30aa|up_4|NC_022997.1_2782314_2782404_-	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA	NA|157aa|up_3|NC_022997.1_2782564_2783035_-	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|413aa|up_2|NC_022997.1_2783074_2784313_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|244aa|up_1|NC_022997.1_2784517_2785249_+	pfam00293, NUDIX, NUDIX domain	NA|305aa|up_0|NC_022997.1_2785332_2786247_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|521aa|down_0|NC_022997.1_2786848_2788411_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|449aa|down_1|NC_022997.1_2788920_2790267_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|182aa|down_2|NC_022997.1_2790641_2791187_+	NA	NA|296aa|down_3|NC_022997.1_2791188_2792076_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|129aa|down_4|NC_022997.1_2792072_2792459_+	NA	NA|65aa|down_5|NC_022997.1_2792599_2792794_+	NA	NA|422aa|down_6|NC_022997.1_2793077_2794343_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|506aa|down_7|NC_022997.1_2794419_2795937_+	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|263aa|down_8|NC_022997.1_2796026_2796815_-	cd05233, SDR_c, classical (c) SDRs	NA|365aa|down_9|NC_022997.1_2797296_2798391_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	10	2855612-2855694	9	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	TAGGGTCCAAAGCGATCATGGTCT	24	1	4	2855636-2855670|2855636-2855670|2855636-2855670|2855636-2855670	NC_022997.1_920723-920757|NC_022997.1_2709506-2709540|NC_022997.1_3386043-3386077|NC_022997.1_2709447-2709481	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA,NA|88aa|down_6|NC_022997.1_2861909_2862173_+	NA|617aa|up_9|NC_022997.1_2841780_2843631_-	cd01948, EAL, EAL domain	NA|332aa|up_8|NC_022997.1_2844006_2845002_+	PRK12311, rpsB, 30S ribosomal protein S2	NA|317aa|up_7|NC_022997.1_2845122_2846073_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|243aa|up_6|NC_022997.1_2846300_2847029_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|188aa|up_5|NC_022997.1_2847134_2847698_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|229aa|up_4|NC_022997.1_2847850_2848537_+	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|295aa|up_3|NC_022997.1_2848547_2849432_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|420aa|up_2|NC_022997.1_2849583_2850843_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|473aa|up_1|NC_022997.1_2850940_2852359_+	PRK10779, PRK10779, sigma E protease regulator RseP	NA|775aa|up_0|NC_022997.1_2852670_2854995_+	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	NA|565aa|down_0|NC_022997.1_2856087_2857782_-	pfam10082, BBP2_2, Putative beta-barrel porin 2	NA|172aa|down_1|NC_022997.1_2857945_2858461_-	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|351aa|down_2|NC_022997.1_2858708_2859761_+	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|168aa|down_3|NC_022997.1_2859824_2860328_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|269aa|down_4|NC_022997.1_2860320_2861127_+	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|173aa|down_5|NC_022997.1_2861215_2861734_-	pfam13629, T2SS-T3SS_pil_N, Pilus formation protein N terminal region	NA|88aa|down_6|NC_022997.1_2861909_2862173_+	NA	NA|177aa|down_7|NC_022997.1_2862298_2862829_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|266aa|down_8|NC_022997.1_2862785_2863583_-	COG5387, COG5387, Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]	NA|234aa|down_9|NC_022997.1_2863579_2864281_-	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans  HAD-superfamily hydrolase, subfamily IA, variant 1
GCF_000503895.1_ASM50389v1	NC_022997	Hyphomicrobium nitrativorans NL23, complete sequence	11	3336956-3337039	10	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	GTCGCCTTGCTCCCGAGCCCCTTCGGGG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|116aa|up_0|NC_022997.1_3336265_3336613_-,NA|85aa|down_1|NC_022997.1_3339101_3339356_+,NA|426aa|down_4|NC_022997.1_3341558_3342836_+,NA|134aa|down_5|NC_022997.1_3343013_3343415_+,NA|68aa|down_8|NC_022997.1_3345840_3346044_-	NA|518aa|up_9|NC_022997.1_3325721_3327275_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|647aa|up_8|NC_022997.1_3327287_3329228_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|103aa|up_7|NC_022997.1_3329239_3329548_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|211aa|up_6|NC_022997.1_3329579_3330212_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|163aa|up_5|NC_022997.1_3330350_3330839_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|356aa|up_4|NC_022997.1_3330853_3331921_-	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|705aa|up_3|NC_022997.1_3331940_3334055_-	PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated	NA|428aa|up_2|NC_022997.1_3334051_3335335_-	PRK13596, PRK13596, NADH-quinone oxidoreductase subunit NuoF	NA|235aa|up_1|NC_022997.1_3335345_3336050_-	PRK12373, PRK12373, NADH-quinone oxidoreductase subunit E	NA|116aa|up_0|NC_022997.1_3336265_3336613_-	NA	NA|616aa|down_0|NC_022997.1_3337065_3338913_+	PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated	NA|85aa|down_1|NC_022997.1_3339101_3339356_+	NA	NA|107aa|down_2|NC_022997.1_3339638_3339959_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|405aa|down_3|NC_022997.1_3340140_3341355_+	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	NA|426aa|down_4|NC_022997.1_3341558_3342836_+	NA	NA|134aa|down_5|NC_022997.1_3343013_3343415_+	NA	NA|383aa|down_6|NC_022997.1_3343713_3344862_+	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase	NA|242aa|down_7|NC_022997.1_3345003_3345729_+	pfam00765, Autoind_synth, Autoinducer synthase	NA|68aa|down_8|NC_022997.1_3345840_3346044_-	NA	NA|465aa|down_9|NC_022997.1_3346213_3347608_-	PLN02611, PLN02611, glutamate--cysteine ligase
