The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	638776	648019	6621848	tRNA	uncultured_Caudovirales_phage(75.0%)	11	NA	NA
WP_016488116.1|638776_640057_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.1	5.9e-96
WP_028613324.1|640057_641449_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019473858.1|641585_642545_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_026034699.1|642639_643641_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	81.1	2.1e-157
WP_016488112.1|643652_643988_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	76.6	1.3e-42
WP_028613323.1|643984_644281_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	62.6	2.5e-26
WP_028613322.1|644280_644640_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	65.0	1.9e-36
WP_016488109.1|644641_645034_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.1	2.5e-53
WP_028613321.1|645210_646590_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.6e-27
WP_019474007.1|646794_647013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471940.1|647347_648019_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.5	1.6e-105
>prophage 2
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	770003	776716	6621848	protease	uncultured_Caudovirales_phage(33.33%)	9	NA	NA
WP_019470684.1|770003_771023_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	26.1	3.4e-22
WP_019470682.1|771638_771959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026034375.1|772004_772706_-	hypothetical protein	NA	A0A2H4J991	uncultured_Caudovirales_phage	48.0	6.1e-55
WP_019470680.1|772808_773237_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1L5C2A3	Pseudoalteromonas_phage	39.8	6.7e-12
WP_019470679.1|773226_774501_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	48.1	1.0e-108
WP_019470678.1|774494_774704_+	hypothetical protein	NA	A0A2H4JGS3	uncultured_Caudovirales_phage	44.8	4.5e-06
WP_019470677.1|774707_775070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019470676.1|775407_775614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019470675.1|775705_776716_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	28.2	5.2e-31
>prophage 3
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	858264	907154	6621848	integrase,terminase	Pseudomonas_phage(57.14%)	73	859050:859097	908489:908536
WP_003250679.1|858264_858567_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	38.9	4.0e-11
WP_003250681.1|858547_858904_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
859050:859097	attL	GCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAT	NA	NA	NA	NA
WP_019471866.1|859177_860359_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A059VF45	Pseudomonas_phage	70.1	3.0e-163
WP_026034494.1|860868_861186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471863.1|861238_861457_-	hypothetical protein	NA	A0A0N9ERZ3	Pseudomonas_phage	68.1	1.0e-24
WP_019471862.1|861500_862073_-	hypothetical protein	NA	A0A2H4J611	uncultured_Caudovirales_phage	32.5	2.0e-11
WP_019471861.1|862069_862321_-	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	95.2	3.4e-40
WP_019471860.1|862317_863112_-	hypothetical protein	NA	Q5QF32	Pseudomonas_virus	54.5	3.7e-72
WP_155412667.1|864148_864433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471858.1|864450_865374_-	DNA cytosine methyltransferase	NA	A0A142KB20	Gordonia_phage	38.0	1.6e-26
WP_155412668.1|865429_865687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471856.1|865831_866056_+	entry exclusion lipoprotein TrbK	NA	NA	NA	NA	NA
WP_019471855.1|866139_866763_-	hypothetical protein	NA	A0A2H4JC30	uncultured_Caudovirales_phage	55.3	1.5e-60
WP_019471853.1|867121_867637_-	hypothetical protein	NA	A0A2H4JAQ1	uncultured_Caudovirales_phage	49.2	1.0e-06
WP_019471852.1|867611_867977_-	hypothetical protein	NA	A0A2H4J0L9	uncultured_Caudovirales_phage	86.0	1.3e-51
WP_019471851.1|868058_868592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471850.1|868588_869218_-	YqaJ viral recombinase family protein	NA	A0A0S2SY31	Pseudomonas_phage	70.8	1.3e-80
WP_019471849.1|869204_870149_-	recombinase RecT	NA	H9C0R8	Aeromonas_phage	52.0	2.0e-64
WP_019471848.1|870156_871287_-	hypothetical protein	NA	W6MYA7	Pseudomonas_phage	59.7	1.7e-30
WP_019471845.1|871617_872160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471844.1|872156_872351_-	hypothetical protein	NA	A0A1B0VMB8	Pseudomonas_phage	61.3	2.5e-14
WP_019471843.1|872347_872764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155412669.1|872787_873075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471841.1|873095_873335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471840.1|873775_874042_-	hypothetical protein	NA	H2BD57	Pseudomonas_phage	61.6	5.2e-23
WP_026034493.1|874523_875234_-	helix-turn-helix transcriptional regulator	NA	W6MVG5	Pseudomonas_phage	72.9	1.0e-94
WP_033692338.1|875340_875544_+	helix-turn-helix domain-containing protein	NA	W6MWX8	Pseudomonas_phage	88.1	4.2e-25
WP_019471838.1|875574_875763_+	hypothetical protein	NA	B5WZX7	Pseudomonas_phage	59.7	6.5e-12
WP_019471836.1|876023_876230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471835.1|876250_876463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026034492.1|876586_877387_+	Rha family transcriptional regulator	NA	F1C5A3	Cronobacter_phage	49.1	1.5e-36
WP_019471833.1|877383_877698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471832.1|877694_877892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471831.1|877888_878644_+	hypothetical protein	NA	A0A2H4J580	uncultured_Caudovirales_phage	68.0	2.3e-23
WP_019471830.1|878640_879402_+	Replication protein P	NA	A0A2D1GNB3	Pseudomonas_phage	63.6	2.7e-72
WP_019471829.1|879398_879659_+	hypothetical protein	NA	A0A2H4J0W8	uncultured_Caudovirales_phage	61.8	2.4e-25
WP_019471828.1|879658_879988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471827.1|879984_880455_+	hypothetical protein	NA	A0A2H4J106	uncultured_Caudovirales_phage	63.5	2.7e-54
WP_019471826.1|880451_880751_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JTA9	Pseudomonas_phage	43.1	7.0e-08
WP_019471825.1|880741_881344_+	ninG protein	NA	A0A0U1VZM0	Pseudomonas_phage	57.4	1.3e-56
WP_019471823.1|881486_882173_+	hypothetical protein	NA	J7HXH6	Pseudomonas_phage	51.2	9.3e-56
WP_026034491.1|882341_882668_+	hypothetical protein	NA	A0A088FVG2	Escherichia_phage	52.8	1.9e-22
WP_019471821.1|882664_882976_+	hypothetical protein	NA	A0A193GYR7	Enterobacter_phage	40.9	1.9e-08
WP_019471820.1|883046_883295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026034490.1|883344_883557_+	hypothetical protein	NA	A0A2H4J0Y9	uncultured_Caudovirales_phage	66.7	7.6e-17
WP_019471819.1|883565_884162_+	hypothetical protein	NA	A0A0S2SYA5	Pseudomonas_phage	76.3	1.0e-87
WP_019471818.1|884193_884655_+	DUF2280 domain-containing protein	NA	A0A1B0VMH2	Pseudomonas_phage	80.2	1.1e-52
WP_019471817.1|884641_885928_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	59.1	5.3e-145
WP_019471816.1|885927_887247_+	DUF1073 domain-containing protein	NA	A0A059VA58	Pseudomonas_phage	58.0	2.3e-143
WP_019471815.1|887255_888359_+	DUF2213 domain-containing protein	NA	A0A059VF71	Pseudomonas_phage	46.0	8.1e-78
WP_019471814.1|888362_888797_+	hypothetical protein	NA	L7TJK9	Rhizobium_phage	41.4	4.1e-17
WP_019471813.1|888809_889736_+	DUF2184 domain-containing protein	NA	L7TMZ5	Rhizobium_phage	56.8	7.8e-98
WP_019471812.1|889738_890131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471811.1|890173_890692_+	hypothetical protein	NA	A0A059VG19	Pseudomonas_phage	76.3	4.7e-68
WP_019471810.1|890688_891690_+	hypothetical protein	NA	A0A059VJV1	Pseudomonas_phage	48.2	7.2e-73
WP_019471809.1|891691_892075_+	hypothetical protein	NA	A0A059VA70	Pseudomonas_phage	60.6	1.2e-36
WP_019471808.1|892074_892494_+	hypothetical protein	NA	A0A059VF88	Pseudomonas_phage	38.0	8.5e-20
WP_019471807.1|892490_892904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471806.1|893024_893204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471805.1|893196_893397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471804.1|893491_894655_+	Ig domain-containing protein	NA	A0A059VG08	Pseudomonas_phage	69.7	1.7e-118
WP_019471803.1|894731_895205_+	hypothetical protein	NA	A0A059VF34	Pseudomonas_phage	51.0	6.2e-35
WP_019471802.1|895252_895462_+	hypothetical protein	NA	A0A059VJS3	Pseudomonas_phage	54.4	1.5e-12
WP_019471801.1|895472_895631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471800.1|895687_895984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471799.1|896039_899636_+	hypothetical protein	NA	A0A2H4J107	uncultured_Caudovirales_phage	38.7	1.1e-126
WP_019471798.1|899648_900101_+	hypothetical protein	NA	A0A286S298	Klebsiella_phage	44.9	1.8e-31
WP_019471797.1|900097_900577_+	DUF1833 domain-containing protein	NA	J7I404	Pseudomonas_phage	43.3	3.1e-26
WP_019471796.1|900579_900957_+	hypothetical protein	NA	B5WZT7	Pseudomonas_phage	44.1	3.6e-25
WP_019471795.1|900953_904007_+	hypothetical protein	NA	B5WZT8	Pseudomonas_phage	41.7	2.6e-222
WP_155412670.1|904063_906028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471793.1|906064_906523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471792.1|906665_907154_+	glycoside hydrolase family 104 protein	NA	Q9MC90	Pseudomonas_phage	66.7	8.1e-54
908489:908536	attR	GCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAT	NA	NA	NA	NA
>prophage 4
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	1370411	1426904	6621848	tail,holin,protease,portal,integrase,head,capsid,terminase	Pseudomonas_phage(35.42%)	68	1363503:1363518	1389952:1389967
1363503:1363518	attL	GCCTCCAGCGCCGCGC	NA	NA	NA	NA
WP_012272468.1|1370411_1371998_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	27.6	7.1e-59
WP_019471582.1|1372030_1373245_-|integrase	site-specific integrase	integrase	A0A0U4B0G7	Pseudomonas_phage	64.0	9.1e-147
WP_019471583.1|1373496_1373994_-	hypothetical protein	NA	A0A1B0VM52	Pseudomonas_phage	54.6	1.0e-35
WP_019471584.1|1374045_1374276_-	hypothetical protein	NA	A0A2D2W6A6	Pectobacterium_phage	39.3	7.2e-05
WP_019471585.1|1374319_1374715_-	DUF2591 domain-containing protein	NA	A0A125RNP6	Pseudomonas_phage	34.8	1.2e-10
WP_155412721.1|1374714_1375083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014591205.1|1375103_1375355_-	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	97.6	6.8e-41
WP_019471587.1|1375351_1375846_-	hypothetical protein	NA	I2GUG5	Acinetobacter_phage	32.2	6.1e-09
WP_019471589.1|1376365_1377073_-	hypothetical protein	NA	A0A192Y6F5	Salmonella_phage	42.5	3.6e-10
WP_019471591.1|1377320_1379066_-	DNA methyltransferase	NA	Q5QF27	Pseudomonas_virus	63.8	3.5e-248
WP_019471592.1|1379202_1379373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033692269.1|1379369_1379588_+	entry exclusion lipoprotein TrbK	NA	NA	NA	NA	NA
WP_019471594.1|1380629_1381445_-	DUF2303 family protein	NA	A0A0P0ZBZ4	Stx2-converting_phage	42.6	3.4e-49
WP_016485684.1|1381471_1381819_-	hypothetical protein	NA	I3PUY8	Vibrio_phage	50.0	4.7e-24
WP_019471595.1|1381907_1382450_-	hypothetical protein	NA	A0A2H4J7C8	uncultured_Caudovirales_phage	32.9	1.3e-15
WP_019471596.1|1382446_1382716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471597.1|1382735_1383119_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JA92	uncultured_Caudovirales_phage	59.8	1.1e-24
WP_019471598.1|1383466_1383691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014591195.1|1384338_1384656_+	DUF1654 domain-containing protein	NA	A0A2D1GND3	Pseudomonas_phage	52.4	1.8e-22
WP_014591194.1|1384684_1385566_-	LexA family transcriptional regulator	NA	H2BD63	Pseudomonas_phage	39.9	2.5e-45
WP_155412672.1|1385650_1385866_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA	NA
WP_019471600.1|1386022_1386880_+	hypothetical protein	NA	W6MYB0	Pseudomonas_phage	33.5	1.7e-35
WP_019471601.1|1386869_1387664_+	AAA family ATPase	NA	A0A2H4J3E5	uncultured_Caudovirales_phage	53.4	5.7e-73
WP_019471602.1|1387663_1387960_+	DUF1364 domain-containing protein	NA	A0A220NQY2	Salmonella_phage	69.9	1.5e-31
WP_019471603.1|1387956_1388385_+	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	64.3	1.0e-44
WP_019471604.1|1388381_1389671_+|integrase	site-specific integrase	integrase	A0A2D1GND4	Pseudomonas_phage	52.0	2.2e-114
WP_019471606.1|1389999_1390389_+	antitermination protein Q	NA	A0A1W6JTD2	Pseudomonas_phage	64.8	3.5e-44
1389952:1389967	attR	GCGCGGCGCTGGAGGC	NA	NA	NA	NA
WP_026034466.1|1390713_1391040_+|holin	holin	holin	A0A0A0YUH2	Pseudomonas_phage	73.0	3.6e-34
WP_019471608.1|1391079_1391316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471609.1|1391515_1391746_+	hypothetical protein	NA	A0A2C9CY14	Yersinia_phage	63.4	2.2e-17
WP_019471610.1|1391745_1391970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471612.1|1392139_1392478_+	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	55.1	2.1e-29
WP_019471613.1|1392636_1393113_+|terminase	terminase small subunit	terminase	A0A2H4J8R0	uncultured_Caudovirales_phage	45.1	9.7e-20
WP_019471614.1|1393116_1394796_+|terminase	terminase large subunit	terminase	S4TSQ6	Salmonella_phage	60.6	4.4e-192
WP_019471616.1|1394946_1396245_+|portal	phage portal protein	portal	H2BDA8	Pseudomonas_virus	72.6	4.3e-187
WP_019471617.1|1396261_1397119_+|protease	Clp protease ClpP	protease	A0A1V0E8B8	Vibrio_phage	64.3	7.2e-98
WP_019471618.1|1397121_1398303_+|capsid	phage major capsid protein	capsid	A0A218MGA4	Pseudomonas_phage	61.1	1.3e-121
WP_019471619.1|1398351_1398888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026034467.1|1398891_1399233_+|head,tail	phage gp6-like head-tail connector protein	head,tail	C4ML08	Xanthomonas_virus	40.0	7.9e-16
WP_080956783.1|1399229_1399556_+|head	phage head closure protein	head	A0A2H4JC00	uncultured_Caudovirales_phage	48.2	1.9e-19
WP_019471622.1|1399738_1400314_+	HK97 gp10 family phage protein	NA	A0A2D1GNN2	Pseudomonas_phage	56.8	2.8e-53
WP_019471623.1|1400306_1400693_+	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	82.8	9.8e-55
WP_019471624.1|1400747_1401248_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	75.2	4.2e-66
WP_019471625.1|1401289_1401634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471627.1|1401914_1405205_+|tail	phage tail tape measure protein	tail	A0A2D1GNQ1	Pseudomonas_phage	33.0	7.3e-66
WP_019471628.1|1405204_1405543_+|tail	phage tail protein	tail	I6PBN7	Cronobacter_phage	38.8	6.0e-16
WP_019471629.1|1405539_1406289_+|tail	phage minor tail protein L	tail	A0A0S2SY57	Pseudomonas_phage	77.9	3.1e-121
WP_019471630.1|1406291_1407047_+	C40 family peptidase	NA	A0A2H4J1J7	uncultured_Caudovirales_phage	75.3	5.9e-120
WP_019471631.1|1407235_1407736_-|protease	retroviral-like aspartic protease	protease	NA	NA	NA	NA
WP_155412673.1|1407921_1408554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471633.1|1408654_1408966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471634.1|1409370_1409958_+|tail	tail assembly protein	tail	A0A2H4J1H0	uncultured_Caudovirales_phage	73.3	8.4e-74
WP_080956854.1|1416281_1419206_+	DUF1983 domain-containing protein	NA	A0A2H4J0B1	uncultured_Caudovirales_phage	53.7	1.0e-39
WP_019471636.1|1419205_1420261_+	hypothetical protein	NA	A0A2H4JA10	uncultured_Caudovirales_phage	67.1	5.0e-141
WP_155412674.1|1420270_1420777_+	hypothetical protein	NA	A0A2H4J2B7	uncultured_Caudovirales_phage	67.1	2.0e-15
WP_019471637.1|1420787_1421243_+|tail	tail fiber assembly protein	tail	A0A2H4J9Z7	uncultured_Caudovirales_phage	48.9	1.3e-16
WP_019471638.1|1421304_1421535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471639.1|1421531_1421981_+	structural protein	NA	A0A2R3UAM8	Myoviridae_environmental_samples	52.7	3.6e-32
WP_026034468.1|1421977_1422487_+	DUF2514 domain-containing protein	NA	A0A2H4J3Q6	uncultured_Caudovirales_phage	59.1	2.7e-36
WP_019471641.1|1422583_1422868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471642.1|1423001_1423415_+	response regulator	NA	NA	NA	NA	NA
WP_019471643.1|1423429_1423840_-	low affinity iron permease family protein	NA	A0A1C9EHA1	Mycobacterium_phage	40.8	9.0e-06
WP_019471644.1|1423974_1424475_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_019471645.1|1424755_1425199_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_019471646.1|1425208_1425715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019471647.1|1425997_1426231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026034469.1|1426311_1426536_+	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	78.4	9.5e-26
WP_019471649.1|1426610_1426904_+	hypothetical protein	NA	A0A2H4JER5	uncultured_Caudovirales_phage	67.0	6.1e-33
>prophage 5
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	1929636	1969531	6621848	protease,plate,transposase	Klebsiella_phage(33.33%)	30	NA	NA
WP_028613918.1|1929636_1930119_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_028613917.1|1930118_1931939_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_028613916.1|1931902_1932973_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_028613915.1|1932969_1935567_+	type VI secretion system ATPase TssH	NA	A0A0A8J958	Klebsiella_phage	31.1	6.4e-89
WP_028613914.1|1935591_1936314_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_028613913.1|1936310_1937654_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_028613912.1|1937650_1938367_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_028613911.1|1938397_1942195_+	ImcF-like family protein	NA	NA	NA	NA	NA
WP_028613910.1|1942191_1943100_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_028613909.1|1943096_1945589_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_016499518.1|1945732_1946251_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_028613908.1|1946345_1947431_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_028613907.1|1947479_1949996_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.8	5.3e-157
WP_028613906.1|1950084_1950591_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_028613905.1|1950590_1951556_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_028613904.1|1951768_1954186_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_028613411.1|1954447_1955401_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_028613903.1|1955539_1957189_+	MFS transporter	NA	NA	NA	NA	NA
WP_028613902.1|1957185_1958319_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_028613901.1|1958335_1959211_-	AEC family transporter	NA	NA	NA	NA	NA
WP_028613900.1|1959726_1961025_+	MFS transporter	NA	NA	NA	NA	NA
WP_028613899.1|1961190_1961499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028613898.1|1961547_1962099_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_028613897.1|1962653_1963715_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4W5F1	Pandoravirus	49.4	1.5e-84
WP_028613896.1|1963794_1964076_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_028613895.1|1964218_1966018_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_028613894.1|1966014_1967073_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_028613893.1|1967072_1968089_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_028613892.1|1968225_1968996_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_028613891.1|1969051_1969531_+|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
>prophage 6
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	2726010	2761982	6621848	tail,plate,transposase,integrase,head	uncultured_Caudovirales_phage(95.12%)	45	2727148:2727163	2746259:2746274
WP_019470950.1|2726010_2726688_-	LexA family transcriptional regulator	NA	A0A2H4J7C3	uncultured_Caudovirales_phage	55.1	1.8e-64
WP_080956799.1|2726926_2727214_+	hypothetical protein	NA	A0A125RN89	Pseudomonas_phage	51.8	5.8e-20
2727148:2727163	attL	GAACAGCGATGGCACC	NA	NA	NA	NA
WP_019470949.1|2727255_2729304_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A2H4J707	uncultured_Caudovirales_phage	66.1	5.8e-271
WP_019470948.1|2729362_2730085_+	AAA family ATPase	NA	A0A2H4J809	uncultured_Caudovirales_phage	68.8	3.1e-94
WP_019470947.1|2730084_2730858_+	hypothetical protein	NA	A0A2H4J7A8	uncultured_Caudovirales_phage	74.2	4.5e-107
WP_019470946.1|2731215_2731722_+	hypothetical protein	NA	A0A2H4J7X8	uncultured_Caudovirales_phage	86.3	3.2e-77
WP_019470945.1|2731721_2732219_+	hypothetical protein	NA	A0A2H4JFV8	uncultured_Caudovirales_phage	94.5	2.0e-84
WP_155412688.1|2732211_2732688_+	hypothetical protein	NA	A0A2H4J1Q8	uncultured_Caudovirales_phage	95.6	4.4e-81
WP_019470943.1|2732684_2733326_+	DUF3164 family protein	NA	A0A2H4IYN0	uncultured_Caudovirales_phage	94.8	1.8e-106
WP_019470942.1|2733365_2733629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019470940.1|2733962_2734649_+	DUF2786 domain-containing protein	NA	A0A2H4JCP9	uncultured_Caudovirales_phage	93.0	1.3e-113
WP_019470939.1|2734645_2735047_+	regulatory protein GemA	NA	A0A2H4J581	uncultured_Caudovirales_phage	94.0	1.4e-64
WP_019470938.1|2735043_2735496_+	hypothetical protein	NA	A0A2H4J0B0	uncultured_Caudovirales_phage	75.3	5.7e-62
WP_019470937.1|2735928_2736234_+	membrane protein	NA	A0A2H4JBL7	uncultured_Caudovirales_phage	98.0	2.9e-49
WP_026034405.1|2736236_2736860_+	transglycosylase SLT domain-containing protein	NA	A0A2H4J7R8	uncultured_Caudovirales_phage	97.6	2.5e-116
WP_020628564.1|2736856_2737495_+	hypothetical protein	NA	A0A2H4JEG6	uncultured_Caudovirales_phage	80.7	2.3e-88
WP_019470934.1|2737481_2737697_+	hypothetical protein	NA	A0A2H4J994	uncultured_Caudovirales_phage	98.6	1.1e-34
WP_019470933.1|2737693_2738026_+	hypothetical protein	NA	A0A2H4J7V5	uncultured_Caudovirales_phage	83.6	4.3e-43
WP_019470932.1|2738022_2738331_+	hypothetical protein	NA	A0A2H4JGU5	uncultured_Caudovirales_phage	85.3	8.7e-46
WP_019470931.1|2738330_2738849_+	DUF3486 family protein	NA	A0A2H4JD50	uncultured_Caudovirales_phage	95.3	3.3e-82
WP_019470930.1|2738851_2739307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026034404.1|2739363_2740905_+	hypothetical protein	NA	A0A2H4JF57	uncultured_Caudovirales_phage	92.8	1.9e-274
WP_019470928.1|2740904_2742455_+	DUF935 domain-containing protein	NA	A0A2H4JGA9	uncultured_Caudovirales_phage	87.8	4.9e-262
WP_019470926.1|2742682_2743963_+	hypothetical protein	NA	A0A2H4IYU7	uncultured_Caudovirales_phage	81.7	1.4e-206
WP_019470925.1|2743993_2744542_+	phage virion morphogenesis protein	NA	A0A2H4J9E5	uncultured_Caudovirales_phage	90.1	3.3e-88
WP_019470924.1|2744836_2745814_+	hypothetical protein	NA	A0A2H4J9A2	uncultured_Caudovirales_phage	54.3	7.7e-96
WP_019470923.1|2745827_2746721_+|head	head protein	head	A0SMP3	Pseudomonas_virus	55.8	1.3e-89
2746259:2746274	attR	GAACAGCGATGGCACC	NA	NA	NA	NA
WP_019470922.1|2746726_2747344_+	hypothetical protein	NA	A0A2H4J7W4	uncultured_Caudovirales_phage	47.7	9.0e-42
WP_019470921.1|2747343_2747835_+	DUF1320 domain-containing protein	NA	A0A2H4JB66	uncultured_Caudovirales_phage	93.9	7.3e-79
WP_019470920.1|2747834_2748416_+	DUF1834 family protein	NA	A0A2H4JEC0	uncultured_Caudovirales_phage	85.9	6.8e-92
WP_019470919.1|2748415_2748607_+	DUF2635 domain-containing protein	NA	A0A2H4JED6	uncultured_Caudovirales_phage	74.6	1.4e-17
WP_019470918.1|2748603_2749701_+	hypothetical protein	NA	A0A2H4JFT7	uncultured_Caudovirales_phage	84.1	9.6e-164
WP_019470917.1|2749712_2750084_+	hypothetical protein	NA	A0A2H4J9F8	uncultured_Caudovirales_phage	84.6	2.2e-51
WP_019470916.1|2750089_2750473_+	hypothetical protein	NA	A0A2H4JD25	uncultured_Caudovirales_phage	81.7	4.1e-45
WP_019470915.1|2750575_2750842_+	hypothetical protein	NA	A0A2H4J9B1	uncultured_Caudovirales_phage	84.1	5.4e-36
WP_019470914.1|2750882_2753078_+	hypothetical protein	NA	A0A2H4JC53	uncultured_Caudovirales_phage	93.3	0.0e+00
WP_019470913.1|2753074_2754400_+	hypothetical protein	NA	A0A2H4JGT4	uncultured_Caudovirales_phage	87.3	1.1e-219
WP_019470912.1|2754389_2755514_+|tail	tail protein	tail	A0A2H4J9E6	uncultured_Caudovirales_phage	91.5	8.0e-198
WP_019470911.1|2755513_2756074_+|plate	phage baseplate assembly protein	plate	A0A2H4JFE0	uncultured_Caudovirales_phage	87.6	3.0e-89
WP_019470910.1|2756159_2756507_+	hypothetical protein	NA	A0A2H4JDR8	uncultured_Caudovirales_phage	93.0	1.8e-55
WP_026034402.1|2756506_2757583_+|plate	baseplate J/gp47 family protein	plate	A0A2H4JC98	uncultured_Caudovirales_phage	74.4	8.0e-147
WP_019470908.1|2757579_2758185_+	DUF2313 domain-containing protein	NA	A0A2H4J9D6	uncultured_Caudovirales_phage	74.5	9.0e-79
WP_019470907.1|2758177_2760202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019470906.1|2760216_2760966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019470905.1|2761040_2761982_+	hypothetical protein	NA	A0A2H4J9C3	uncultured_Caudovirales_phage	45.2	7.0e-62
>prophage 7
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	2854336	2890110	6621848	coat,protease	Feldmannia_species_virus(25.0%)	30	NA	NA
WP_028613478.1|2854336_2855305_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_028613477.1|2855301_2857599_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_028613476.1|2857707_2858484_-	molecular chaperone	NA	NA	NA	NA	NA
WP_028613475.1|2858524_2859028_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_028613474.1|2859031_2859565_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_028613473.1|2859583_2860120_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_028613472.1|2860150_2860678_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_028613471.1|2860948_2863195_+	GAF domain-containing protein	NA	B5LWN8	Feldmannia_species_virus	22.9	1.7e-26
WP_028613470.1|2863210_2863672_+	response regulator	NA	NA	NA	NA	NA
WP_028613469.1|2863685_2866073_+	hybrid sensor histidine kinase/response regulator	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.8	1.9e-10
WP_012271609.1|2866538_2866781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028613468.1|2866909_2867980_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_028613467.1|2868107_2869997_-	propionyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	29.5	2.8e-54
WP_028613466.1|2870175_2871042_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_028613465.1|2871015_2872170_-	HPP family protein	NA	M1NSC5	Streptococcus_phage	32.0	9.3e-08
WP_028613464.1|2872453_2873773_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_028613463.1|2873769_2874438_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_028613462.1|2874438_2874753_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_028613461.1|2874752_2875061_-	peptidase	NA	NA	NA	NA	NA
WP_028613460.1|2875299_2876379_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_012271598.1|2876432_2876789_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_028613459.1|2876917_2877433_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_028613458.1|2877803_2880413_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_028613457.1|2880587_2882072_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
WP_028613456.1|2882242_2883433_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA	NA
WP_028613455.1|2883580_2886169_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA	NA
WP_028613454.1|2886362_2887490_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_016485912.1|2887664_2888555_-	methylisocitrate lyase	NA	NA	NA	NA	NA
WP_019470702.1|2888551_2889268_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019470703.1|2889573_2890110_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
>prophage 8
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	3957497	3965275	6621848		Planktothrix_phage(16.67%)	10	NA	NA
WP_019471364.1|3957497_3958307_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.1	1.0e-24
WP_019471365.1|3958554_3959529_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.9	1.8e-36
WP_019471366.1|3959540_3960065_+	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	48.9	2.4e-27
WP_019471367.1|3960073_3960646_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_019471368.1|3960632_3961157_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003255132.1|3961157_3961883_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	8.4e-23
WP_024717623.1|3962059_3963553_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_016485037.1|3963632_3963941_+	ribosome-associated translation inhibitor RaiA	NA	A0A0M7QH33	Escherichia_phage	34.1	4.4e-05
WP_019471369.1|3963953_3964418_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_019471370.1|3964420_3965275_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.0	1.8e-08
>prophage 9
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	4654541	4709846	6621848	holin,protease,transposase	Tupanvirus(25.0%)	44	NA	NA
WP_019470186.1|4654541_4655042_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_019470187.1|4655224_4656112_+	acyltransferase	NA	NA	NA	NA	NA
WP_019470188.1|4656355_4657705_+	amino acid permease	NA	NA	NA	NA	NA
WP_019470189.1|4657903_4658479_-	DUF2780 domain-containing protein	NA	NA	NA	NA	NA
WP_080956827.1|4658678_4659455_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA	NA
WP_016497631.1|4659547_4660747_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	28.7	1.5e-13
WP_016484540.1|4661018_4661876_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_012270121.1|4661888_4662521_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA	NA
WP_016497630.1|4662663_4665678_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA	NA
WP_016484537.1|4665674_4666010_-	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_016484536.1|4666024_4667275_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_016497629.1|4667290_4668544_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	8.6e-100
WP_019470190.1|4668883_4669924_+	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_019470191.1|4670030_4671968_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_019470192.1|4672154_4672457_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_019470193.1|4672453_4672684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019470194.1|4672960_4674586_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.7	2.0e-80
WP_019470195.1|4674936_4675392_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_019470196.1|4675605_4676706_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
WP_019470197.1|4677014_4678307_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
WP_019470198.1|4678389_4679226_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA	NA
WP_016484524.1|4680085_4680856_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_019470199.1|4680866_4682099_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_019470200.1|4682098_4684051_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_019470201.1|4684227_4686288_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_019470202.1|4686303_4686834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019470203.1|4686911_4687889_-	membrane dipeptidase	NA	NA	NA	NA	NA
WP_019470204.1|4688172_4688574_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_019471315.1|4688701_4689646_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_019471314.1|4689792_4690737_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_019471313.1|4690844_4691729_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_019471312.1|4691894_4692860_+	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_019471311.1|4692870_4693344_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_012270100.1|4693598_4693856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019471310.1|4694063_4695731_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA	NA
WP_019471309.1|4695727_4698511_-	insulinase family protein	NA	NA	NA	NA	NA
WP_155412707.1|4698537_4701369_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_155412708.1|4701621_4702593_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_019471306.1|4702672_4703173_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_016497607.1|4703364_4704471_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_019471305.1|4704963_4706340_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_019471304.1|4706793_4707741_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_016484510.1|4707825_4708671_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_019471303.1|4708667_4709846_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.7	1.1e-24
>prophage 10
NZ_CP010979	Pseudomonas putida S13.1.2, complete genome	6621848	5418195	5424486	6621848		Stx_converting_phage(16.67%)	8	NA	NA
WP_016502036.1|5418195_5418543_+	NirD/YgiW/YdeI family stress tolerance protein	NA	A0A1I9LJU6	Stx_converting_phage	38.9	1.1e-09
WP_019472107.1|5418624_5419869_-	MFS transporter	NA	NA	NA	NA	NA
WP_019472108.1|5419977_5420877_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.2	7.2e-08
WP_016502033.1|5420953_5421727_+	ParA family protein	NA	NA	NA	NA	NA
WP_016502032.1|5421796_5422105_+	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	47.4	4.2e-16
WP_019472109.1|5422094_5422451_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.8	2.7e-30
WP_019472110.1|5422454_5422889_-	thioredoxin TrxC	NA	A0A0A7CHH9	Dinoroseobacter_phage	34.7	3.4e-11
WP_019473141.1|5423025_5424486_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	37.9	4.0e-64
