assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000498335.1_ASM49833v1	NC_022911	Helicobacter pylori BM012S, complete sequence	1	653287-653384	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	TTAAAAACGCTAAAAAGGATTTT	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh	NA|135aa|up_8|NC_022911.1_645732_646137_+,NA|231aa|up_5|NC_022911.1_648046_648739_-,NA|121aa|up_3|NC_022911.1_649952_650315_+,NA|85aa|up_0|NC_022911.1_652837_653092_-,NA	NA|88aa|up_9|NC_022911.1_645453_645717_+	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|135aa|up_8|NC_022911.1_645732_646137_+	NA	NA|293aa|up_7|NC_022911.1_646220_647099_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|294aa|up_6|NC_022911.1_647111_647993_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|231aa|up_5|NC_022911.1_648046_648739_-	NA	NA|370aa|up_4|NC_022911.1_648749_649859_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|121aa|up_3|NC_022911.1_649952_650315_+	NA	NA|321aa|up_2|NC_022911.1_650314_651277_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|382aa|up_1|NC_022911.1_651282_652428_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|85aa|up_0|NC_022911.1_652837_653092_-	NA	NA|252aa|down_0|NC_022911.1_656275_657031_-	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|542aa|down_1|NC_022911.1_657091_658717_-	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|80aa|down_2|NC_022911.1_658719_658959_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|207aa|down_3|NC_022911.1_659029_659650_-	TIGR03263, Guanylate_kinase, guanylate kinase	NA|541aa|down_4|NC_022911.1_659642_661265_-	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|181aa|down_5|NC_022911.1_661406_661949_+	PRK13912, PRK13912, nuclease NucT; Provisional	NA|246aa|down_6|NC_022911.1_661957_662695_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|238aa|down_7|NC_022911.1_662824_663538_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|228aa|down_8|NC_022911.1_663555_664239_+	TIGR03584, PseF, pseudaminic acid cytidylyltransferase	NA|298aa|down_9|NC_022911.1_664208_665102_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
GCF_000498335.1_ASM49833v1	NC_022911	Helicobacter pylori BM012S, complete sequence	2	1337121-1337260	2	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,cas3,DEDDh	Type V-U4	AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	50	0	0	NA	NA	NA	1	1	TypeV-U4	c2c9_V-U4,cas3,DEDDh	NA,NA|102aa|down_0|NC_022911.1_1337642_1337948_-,NA|111aa|down_2|NC_022911.1_1342243_1342576_-,NA|93aa|down_6|NC_022911.1_1347306_1347585_+,NA|228aa|down_8|NC_022911.1_1348921_1349605_+	NA|597aa|up_9|NC_022911.1_1324041_1325832_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|617aa|up_8|NC_022911.1_1325846_1327697_-	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|260aa|up_7|NC_022911.1_1327699_1328479_-	PRK06669, fliH, flagellar assembly protein H; Validated	NA|344aa|up_6|NC_022911.1_1328465_1329497_-	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|568aa|up_5|NC_022911.1_1329514_1331218_-	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|223aa|up_4|NC_022911.1_1331261_1331930_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|539aa|up_3|NC_022911.1_1332186_1333803_+	PRK05380, pyrG, CTP synthetase; Validated	NA|517aa|up_2|NC_022911.1_1333811_1335362_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|294aa|up_1|NC_022911.1_1335361_1336243_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|113aa|up_0|NC_022911.1_1336742_1337081_-	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|102aa|down_0|NC_022911.1_1337642_1337948_-	NA	NA|159aa|down_1|NC_022911.1_1338135_1338612_-	sd00010, SLR, Sel1-like repeat	NA|111aa|down_2|NC_022911.1_1342243_1342576_-	NA	NA|288aa|down_3|NC_022911.1_1344409_1345273_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|218aa|down_4|NC_022911.1_1345323_1345977_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	c2c9_V-U4|420aa|down_5|NC_022911.1_1345951_1347211_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|93aa|down_6|NC_022911.1_1347306_1347585_+	NA	NA|421aa|down_7|NC_022911.1_1347586_1348849_+	COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]	NA|228aa|down_8|NC_022911.1_1348921_1349605_+	NA	NA|226aa|down_9|NC_022911.1_1349892_1350570_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]
GCF_000498335.1_ASM49833v1	NC_022911	Helicobacter pylori BM012S, complete sequence	3	1445131-1445215	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh	NA|512aa|up_8|NC_022911.1_1434789_1436325_+,NA|436aa|down_0|NC_022911.1_1446435_1447743_+	NA|345aa|up_9|NC_022911.1_1433223_1434258_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NC_022911.1_1434789_1436325_+	NA	NA|251aa|up_7|NC_022911.1_1436345_1437098_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NC_022911.1_1437287_1438160_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NC_022911.1_1438229_1438856_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_022911.1_1438874_1440701_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_022911.1_1440767_1442045_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_022911.1_1442055_1442739_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_022911.1_1442725_1443736_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_022911.1_1443905_1444952_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_022911.1_1446435_1447743_+	NA	NA|221aa|down_1|NC_022911.1_1447749_1448412_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_022911.1_1448691_1449252_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_022911.1_1449267_1449660_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_022911.1_1449669_1450893_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_022911.1_1450905_1451850_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_022911.1_1451959_1453282_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_022911.1_1453347_1454181_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_022911.1_1454185_1456162_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|239aa|down_9|NC_022911.1_1456231_1456948_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
