assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000498315.1_ASM49831v1	NC_022886	Helicobacter pylori BM012A, complete sequence	1	653278-653375	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	TTAAAAACGCTAAAAAGGATTTT	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh	NA|135aa|up_8|NC_022886.1_645723_646128_+,NA|231aa|up_5|NC_022886.1_648037_648730_-,NA|121aa|up_3|NC_022886.1_649943_650306_+,NA|85aa|up_0|NC_022886.1_652828_653083_-,NA	NA|88aa|up_9|NC_022886.1_645444_645708_+	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|135aa|up_8|NC_022886.1_645723_646128_+	NA	NA|293aa|up_7|NC_022886.1_646211_647090_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|294aa|up_6|NC_022886.1_647102_647984_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|231aa|up_5|NC_022886.1_648037_648730_-	NA	NA|370aa|up_4|NC_022886.1_648740_649850_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|121aa|up_3|NC_022886.1_649943_650306_+	NA	NA|321aa|up_2|NC_022886.1_650305_651268_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|382aa|up_1|NC_022886.1_651273_652419_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|85aa|up_0|NC_022886.1_652828_653083_-	NA	NA|744aa|down_0|NC_022886.1_653737_655969_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|252aa|down_1|NC_022886.1_656268_657024_-	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|542aa|down_2|NC_022886.1_657084_658710_-	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|80aa|down_3|NC_022886.1_658712_658952_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|207aa|down_4|NC_022886.1_659022_659643_-	TIGR03263, Guanylate_kinase, guanylate kinase	NA|535aa|down_5|NC_022886.1_659635_661240_-	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|181aa|down_6|NC_022886.1_661381_661924_+	PRK13912, PRK13912, nuclease NucT; Provisional	NA|246aa|down_7|NC_022886.1_661932_662670_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|238aa|down_8|NC_022886.1_662799_663513_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|228aa|down_9|NC_022886.1_663530_664214_+	TIGR03584, PseF, pseudaminic acid cytidylyltransferase
GCF_000498315.1_ASM49831v1	NC_022886	Helicobacter pylori BM012A, complete sequence	2	1337084-1337223	2	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,cas3,DEDDh	Type V-U4	AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	50	0	0	NA	NA	NA	1	1	TypeV-U4	c2c9_V-U4,cas3,DEDDh	NA,NA|102aa|down_0|NC_022886.1_1337605_1337911_-,NA|111aa|down_2|NC_022886.1_1342206_1342539_-,NA|93aa|down_6|NC_022886.1_1347269_1347548_+,NA|228aa|down_8|NC_022886.1_1348884_1349568_+	NA|597aa|up_9|NC_022886.1_1324003_1325794_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|617aa|up_8|NC_022886.1_1325808_1327659_-	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|260aa|up_7|NC_022886.1_1327661_1328441_-	PRK06669, fliH, flagellar assembly protein H; Validated	NA|344aa|up_6|NC_022886.1_1328427_1329459_-	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|568aa|up_5|NC_022886.1_1329476_1331180_-	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|223aa|up_4|NC_022886.1_1331223_1331892_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|539aa|up_3|NC_022886.1_1332149_1333766_+	PRK05380, pyrG, CTP synthetase; Validated	NA|517aa|up_2|NC_022886.1_1333774_1335325_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|294aa|up_1|NC_022886.1_1335324_1336206_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|113aa|up_0|NC_022886.1_1336705_1337044_-	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|102aa|down_0|NC_022886.1_1337605_1337911_-	NA	NA|159aa|down_1|NC_022886.1_1338098_1338575_-	sd00010, SLR, Sel1-like repeat	NA|111aa|down_2|NC_022886.1_1342206_1342539_-	NA	NA|288aa|down_3|NC_022886.1_1344372_1345236_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|218aa|down_4|NC_022886.1_1345286_1345940_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	c2c9_V-U4|420aa|down_5|NC_022886.1_1345914_1347174_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|93aa|down_6|NC_022886.1_1347269_1347548_+	NA	NA|421aa|down_7|NC_022886.1_1347549_1348812_+	COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]	NA|228aa|down_8|NC_022886.1_1348884_1349568_+	NA	NA|226aa|down_9|NC_022886.1_1349855_1350533_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]
GCF_000498315.1_ASM49831v1	NC_022886	Helicobacter pylori BM012A, complete sequence	3	1445086-1445170	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh	NA|512aa|up_8|NC_022886.1_1434744_1436280_+,NA|436aa|down_0|NC_022886.1_1446392_1447700_+	NA|345aa|up_9|NC_022886.1_1433178_1434213_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NC_022886.1_1434744_1436280_+	NA	NA|251aa|up_7|NC_022886.1_1436300_1437053_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NC_022886.1_1437242_1438115_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NC_022886.1_1438184_1438811_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_022886.1_1438829_1440656_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_022886.1_1440722_1442000_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_022886.1_1442010_1442694_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_022886.1_1442680_1443691_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_022886.1_1443860_1444907_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_022886.1_1446392_1447700_+	NA	NA|221aa|down_1|NC_022886.1_1447706_1448369_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_022886.1_1448648_1449209_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_022886.1_1449224_1449617_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_022886.1_1449626_1450850_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_022886.1_1450862_1451807_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_022886.1_1451916_1453239_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_022886.1_1453304_1454138_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_022886.1_1454142_1456119_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|239aa|down_9|NC_022886.1_1456188_1456905_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
