assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	1	1339998-1340113	1	CRISPRCasFinder	no	RT	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Unclear	GGTTTAAATACGTTAAATAGCAAAACAGGTGA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|100aa|up_5|NC_022873.1_1332576_1332876_+,NA|282aa|up_4|NC_022873.1_1332930_1333776_-,NA|71aa|down_0|NC_022873.1_1342014_1342227_+,NA|59aa|down_9|NC_022873.1_1349301_1349478_+	NA|312aa|up_9|NC_022873.1_1326050_1326986_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|474aa|up_8|NC_022873.1_1327005_1328427_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|451aa|up_7|NC_022873.1_1328483_1329836_-	pfam13218, DUF4026, Protein of unknown function (DUF4026)	NA|789aa|up_6|NC_022873.1_1330077_1332444_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|100aa|up_5|NC_022873.1_1332576_1332876_+	NA	NA|282aa|up_4|NC_022873.1_1332930_1333776_-	NA	NA|134aa|up_3|NC_022873.1_1334005_1334407_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|646aa|up_2|NC_022873.1_1334409_1336347_+	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|191aa|up_1|NC_022873.1_1336618_1337191_+	COG1309, AcrR, Transcriptional regulator [Transcription]	RT|425aa|up_0|NC_022873.1_1337710_1338985_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|71aa|down_0|NC_022873.1_1342014_1342227_+	NA	NA|102aa|down_1|NC_022873.1_1342230_1342536_+	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown]	NA|118aa|down_2|NC_022873.1_1342562_1342916_-	pfam14470, bPH_3, Bacterial PH domain	NA|170aa|down_3|NC_022873.1_1343049_1343559_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|338aa|down_4|NC_022873.1_1343753_1344767_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|43aa|down_5|NC_022873.1_1344806_1344935_-	pfam14149, YhfH, YhfH-like protein	NA|245aa|down_6|NC_022873.1_1345138_1345873_+	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|330aa|down_7|NC_022873.1_1345882_1346872_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|511aa|down_8|NC_022873.1_1347601_1349134_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|59aa|down_9|NC_022873.1_1349301_1349478_+	NA
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	2	3528808-3528880	2	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	TTTATTCTCATTATTGATAATGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|76aa|up_7|NC_022873.1_3522434_3522662_-,NA|161aa|down_1|NC_022873.1_3529708_3530191_-,NA|118aa|down_3|NC_022873.1_3531925_3532279_-,NA|86aa|down_6|NC_022873.1_3533522_3533780_-	NA|67aa|up_9|NC_022873.1_3520940_3521141_-	pfam14044, NETI, NETI protein	NA|399aa|up_8|NC_022873.1_3521124_3522321_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|76aa|up_7|NC_022873.1_3522434_3522662_-	NA	NA|299aa|up_6|NC_022873.1_3522728_3523625_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|139aa|up_5|NC_022873.1_3523814_3524231_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|400aa|up_4|NC_022873.1_3524246_3525446_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|420aa|up_3|NC_022873.1_3525546_3526806_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|263aa|up_2|NC_022873.1_3526860_3527649_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|300aa|up_1|NC_022873.1_3527651_3528551_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|80aa|up_0|NC_022873.1_3528547_3528787_-	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|182aa|down_0|NC_022873.1_3528912_3529458_+	PRK06474, PRK06474, hypothetical protein; Provisional	NA|161aa|down_1|NC_022873.1_3529708_3530191_-	NA	NA|449aa|down_2|NC_022873.1_3530538_3531885_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|118aa|down_3|NC_022873.1_3531925_3532279_-	NA	NA|192aa|down_4|NC_022873.1_3532275_3532851_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|128aa|down_5|NC_022873.1_3532879_3533263_-	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	NA|86aa|down_6|NC_022873.1_3533522_3533780_-	NA	NA|241aa|down_7|NC_022873.1_3534325_3535048_-	pfam14256, YwiC, YwiC-like protein	NA|234aa|down_8|NC_022873.1_3535231_3535933_-	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component	NA|554aa|down_9|NC_022873.1_3535905_3537567_-	cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	3	3583799-3583870	3	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	ACCTTCTGCACCTGTTGGACCAGTTA	26	1	1	3583825-3583843	NC_022873.1_2894094-2894112	NA	1	1	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|48aa|up_1|NC_022873.1_3580181_3580325_+,NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA|127aa|up_9|NC_022873.1_3569555_3569936_-	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH	NA|343aa|up_8|NC_022873.1_3569997_3571026_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|188aa|up_7|NC_022873.1_3574449_3575013_-	PRK10092, PRK10092, maltose O-acetyltransferase; Provisional	NA|333aa|up_6|NC_022873.1_3575223_3576222_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_5|NC_022873.1_3576612_3577770_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|up_4|NC_022873.1_3577799_3578921_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_3|NC_022873.1_3578984_3579233_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_2|NC_022873.1_3579442_3579904_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|48aa|up_1|NC_022873.1_3580181_3580325_+	NA	NA|833aa|up_0|NC_022873.1_3580398_3582897_-	pfam18573, BclA_C, BclA C-terminal domain	NA|305aa|down_0|NC_022873.1_3585622_3586537_-	sd00006, TPR, Tetratricopeptide repeat	NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA	NA|80aa|down_2|NC_022873.1_3587290_3587530_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_3|NC_022873.1_3587650_3588199_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_4|NC_022873.1_3588397_3588811_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_5|NC_022873.1_3588863_3590192_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|136aa|down_6|NC_022873.1_3590311_3590719_-	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|258aa|down_7|NC_022873.1_3590980_3591754_+	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2	NA|256aa|down_8|NC_022873.1_3591869_3592637_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|352aa|down_9|NC_022873.1_3592638_3593694_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	4	3584069-3584203	4	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	ACCTTCTGCACCTGTTGGACCAGTTA	26	1	1	3584095-3584113	NC_022873.1_5108636-5108654	NA	2	2	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|48aa|up_1|NC_022873.1_3580181_3580325_+,NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA|127aa|up_9|NC_022873.1_3569555_3569936_-	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH	NA|343aa|up_8|NC_022873.1_3569997_3571026_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|188aa|up_7|NC_022873.1_3574449_3575013_-	PRK10092, PRK10092, maltose O-acetyltransferase; Provisional	NA|333aa|up_6|NC_022873.1_3575223_3576222_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_5|NC_022873.1_3576612_3577770_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|up_4|NC_022873.1_3577799_3578921_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_3|NC_022873.1_3578984_3579233_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_2|NC_022873.1_3579442_3579904_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|48aa|up_1|NC_022873.1_3580181_3580325_+	NA	NA|833aa|up_0|NC_022873.1_3580398_3582897_-	pfam18573, BclA_C, BclA C-terminal domain	NA|305aa|down_0|NC_022873.1_3585622_3586537_-	sd00006, TPR, Tetratricopeptide repeat	NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA	NA|80aa|down_2|NC_022873.1_3587290_3587530_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_3|NC_022873.1_3587650_3588199_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_4|NC_022873.1_3588397_3588811_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_5|NC_022873.1_3588863_3590192_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|136aa|down_6|NC_022873.1_3590311_3590719_-	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|258aa|down_7|NC_022873.1_3590980_3591754_+	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2	NA|256aa|down_8|NC_022873.1_3591869_3592637_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|352aa|down_9|NC_022873.1_3592638_3593694_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	5	3584285-3584422	5	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	ACCTTCTGCACCTGTTGGACCAGTTA	26	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|48aa|up_1|NC_022873.1_3580181_3580325_+,NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA|127aa|up_9|NC_022873.1_3569555_3569936_-	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH	NA|343aa|up_8|NC_022873.1_3569997_3571026_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|188aa|up_7|NC_022873.1_3574449_3575013_-	PRK10092, PRK10092, maltose O-acetyltransferase; Provisional	NA|333aa|up_6|NC_022873.1_3575223_3576222_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_5|NC_022873.1_3576612_3577770_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|up_4|NC_022873.1_3577799_3578921_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_3|NC_022873.1_3578984_3579233_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_2|NC_022873.1_3579442_3579904_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|48aa|up_1|NC_022873.1_3580181_3580325_+	NA	NA|833aa|up_0|NC_022873.1_3580398_3582897_-	pfam18573, BclA_C, BclA C-terminal domain	NA|305aa|down_0|NC_022873.1_3585622_3586537_-	sd00006, TPR, Tetratricopeptide repeat	NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA	NA|80aa|down_2|NC_022873.1_3587290_3587530_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_3|NC_022873.1_3587650_3588199_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_4|NC_022873.1_3588397_3588811_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_5|NC_022873.1_3588863_3590192_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|136aa|down_6|NC_022873.1_3590311_3590719_-	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|258aa|down_7|NC_022873.1_3590980_3591754_+	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2	NA|256aa|down_8|NC_022873.1_3591869_3592637_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|352aa|down_9|NC_022873.1_3592638_3593694_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	6	3584591-3584670	6	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	ACCTTCTGCACCTGTTGGACCAGTTA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|48aa|up_1|NC_022873.1_3580181_3580325_+,NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA|127aa|up_9|NC_022873.1_3569555_3569936_-	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH	NA|343aa|up_8|NC_022873.1_3569997_3571026_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|188aa|up_7|NC_022873.1_3574449_3575013_-	PRK10092, PRK10092, maltose O-acetyltransferase; Provisional	NA|333aa|up_6|NC_022873.1_3575223_3576222_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_5|NC_022873.1_3576612_3577770_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|up_4|NC_022873.1_3577799_3578921_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_3|NC_022873.1_3578984_3579233_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_2|NC_022873.1_3579442_3579904_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|48aa|up_1|NC_022873.1_3580181_3580325_+	NA	NA|833aa|up_0|NC_022873.1_3580398_3582897_-	pfam18573, BclA_C, BclA C-terminal domain	NA|305aa|down_0|NC_022873.1_3585622_3586537_-	sd00006, TPR, Tetratricopeptide repeat	NA|126aa|down_1|NC_022873.1_3586836_3587214_+	NA	NA|80aa|down_2|NC_022873.1_3587290_3587530_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_3|NC_022873.1_3587650_3588199_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_4|NC_022873.1_3588397_3588811_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_5|NC_022873.1_3588863_3590192_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|136aa|down_6|NC_022873.1_3590311_3590719_-	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|258aa|down_7|NC_022873.1_3590980_3591754_+	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2	NA|256aa|down_8|NC_022873.1_3591869_3592637_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|352aa|down_9|NC_022873.1_3592638_3593694_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	7	4026874-4027872	1	CRT	no	RT	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Unclear	AGGTAACACGGGNGCTAC	18	1	1	4027558-4027575	NC_022873.1_2893747-2893730	NA	23	23	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|46aa|up_2|NC_022873.1_4023880_4024018_+,NA|82aa|down_2|NC_022873.1_4029745_4029991_+,NA|104aa|down_9|NC_022873.1_4037165_4037477_-	NA|181aa|up_9|NC_022873.1_4017200_4017743_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|108aa|up_8|NC_022873.1_4017735_4018059_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|445aa|up_7|NC_022873.1_4018579_4019914_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_6|NC_022873.1_4019962_4020352_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_5|NC_022873.1_4020526_4021798_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_4|NC_022873.1_4021790_4023065_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_3|NC_022873.1_4023157_4023781_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|46aa|up_2|NC_022873.1_4023880_4024018_+	NA	NA|319aa|up_1|NC_022873.1_4024049_4025006_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NC_022873.1_4025270_4026236_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|75aa|down_0|NC_022873.1_4028365_4028590_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_1|NC_022873.1_4028611_4029565_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_2|NC_022873.1_4029745_4029991_+	NA	NA|311aa|down_3|NC_022873.1_4030053_4030986_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_4|NC_022873.1_4031335_4033192_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_5|NC_022873.1_4033205_4034117_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|251aa|down_6|NC_022873.1_4034113_4034866_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_7|NC_022873.1_4035025_4036189_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_8|NC_022873.1_4036304_4036847_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|104aa|down_9|NC_022873.1_4037165_4037477_-	NA
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	8	5518603-5519286	2	CRT	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	GTTACTCCATCTGTTCCT	18	1	15	5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223|5519206-5519223	NC_022873.1_3581138-3581155|NC_022873.1_4623682-4623699|NC_022873.1_4623772-4623789|NC_022873.1_4623862-4623879|NC_022873.1_4623997-4624014|NC_022873.1_4624087-4624104|NC_022873.1_4900016-4900033|NC_022873.1_5316743-5316760|NC_022873.1_5518585-5518602|NC_022873.1_3581876-3581893|NC_022873.1_4623592-4623609|NC_022873.1_4623637-4623654|NC_022873.1_4623952-4623969|NC_022873.1_5316878-5316895|NC_022873.1_5519296-5519313	NA	15	15	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|359aa|up_1|NC_022873.1_5515013_5516090_+,NA|88aa|down_0|NC_022873.1_5521295_5521559_+,NA|68aa|down_2|NC_022873.1_5522627_5522831_-,NA|94aa|down_3|NC_022873.1_5522833_5523115_-,NA|59aa|down_6|NC_022873.1_5529415_5529592_-,NA|106aa|down_7|NC_022873.1_5529621_5529939_-	NA|251aa|up_9|NC_022873.1_5504504_5505257_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|355aa|up_8|NC_022873.1_5505253_5506318_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|up_7|NC_022873.1_5506314_5507331_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|339aa|up_6|NC_022873.1_5507350_5508367_-	cd01140, FatB, Siderophore binding protein FatB	NA|226aa|up_5|NC_022873.1_5508752_5509430_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|256aa|up_4|NC_022873.1_5509926_5510694_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|156aa|up_3|NC_022873.1_5511501_5511969_-	pfam01668, SmpB, SmpB protein	NA|811aa|up_2|NC_022873.1_5512095_5514528_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|359aa|up_1|NC_022873.1_5515013_5516090_+	NA	NA|353aa|up_0|NC_022873.1_5516335_5517394_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|88aa|down_0|NC_022873.1_5521295_5521559_+	NA	NA|348aa|down_1|NC_022873.1_5521524_5522568_-	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|68aa|down_2|NC_022873.1_5522627_5522831_-	NA	NA|94aa|down_3|NC_022873.1_5522833_5523115_-	NA	NA|495aa|down_4|NC_022873.1_5524053_5525538_-	pfam05709, Sipho_tail, Phage tail protein	NA|1284aa|down_5|NC_022873.1_5525549_5529401_-	pfam10145, PhageMin_Tail, Phage-related minor tail protein	NA|59aa|down_6|NC_022873.1_5529415_5529592_-	NA	NA|106aa|down_7|NC_022873.1_5529621_5529939_-	NA	NA|201aa|down_8|NC_022873.1_5529987_5530590_-	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family	NA|120aa|down_9|NC_022873.1_5530590_5530950_-	pfam11367, DUF3168, Protein of unknown function (DUF3168)
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	9	5781904-5782037	7	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|45aa|up_0|NC_022873.1_5781581_5781716_-,NA	NA|196aa|up_9|NC_022873.1_5773531_5774119_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|294aa|up_8|NC_022873.1_5774228_5775110_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NC_022873.1_5775349_5776117_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NC_022873.1_5776225_5776927_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NC_022873.1_5776916_5777660_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NC_022873.1_5777933_5778611_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NC_022873.1_5778977_5779412_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NC_022873.1_5779838_5780840_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NC_022873.1_5781000_5781273_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NC_022873.1_5781581_5781716_-	NA	NA|236aa|down_0|NC_022873.1_5782925_5783633_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NC_022873.1_5783632_5784475_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NC_022873.1_5784656_5785664_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NC_022873.1_5785761_5786781_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NC_022873.1_5786988_5788293_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NC_022873.1_5788332_5789043_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NC_022873.1_5789088_5789325_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NC_022873.1_5789527_5791048_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NC_022873.1_5791049_5792552_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NC_022873.1_5792548_5794411_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
GCF_000497525.1_ASM49752v2	NC_022873	Bacillus thuringiensis YBT-1518, complete sequence	10	5798440-5798548	8	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j	Orphan	TTTCTGCTTCGCTAATGCTGCCGCT	25	1	1	5798465-5798523	NC_022873.1_5798567-5798625	NA	1	1	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA,NA	NA|237aa|up_9|NC_022873.1_5788332_5789043_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|up_8|NC_022873.1_5789088_5789325_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|up_7|NC_022873.1_5789527_5791048_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|up_6|NC_022873.1_5791049_5792552_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|up_5|NC_022873.1_5792548_5794411_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|105aa|up_4|NC_022873.1_5794441_5794756_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|175aa|up_3|NC_022873.1_5794748_5795273_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|140aa|up_2|NC_022873.1_5795269_5795689_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|334aa|up_1|NC_022873.1_5795714_5796716_-	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|367aa|up_0|NC_022873.1_5796715_5797816_-	PRK12322, PRK12322, NADH-quinone oxidoreductase subunit D	NA|173aa|down_0|NC_022873.1_5798864_5799383_-	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB	NA|123aa|down_1|NC_022873.1_5799373_5799742_-	PRK07756, PRK07756, NADH-quinone oxidoreductase subunit A	NA|910aa|down_2|NC_022873.1_5799996_5802726_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|215aa|down_3|NC_022873.1_5802749_5803394_-	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|262aa|down_4|NC_022873.1_5803443_5804229_-	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|134aa|down_5|NC_022873.1_5804367_5804769_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|469aa|down_6|NC_022873.1_5804789_5806196_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|287aa|down_7|NC_022873.1_5806435_5807296_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|503aa|down_8|NC_022873.1_5807562_5809071_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|181aa|down_9|NC_022873.1_5809082_5809625_-	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated
GCF_000497525.1_ASM49752v2	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	1	123767-124061	1	CRISPRCasFinder	no	RT	cas14j,RT,Cas14u_CAS-V	Unclear	TTCTTCTAGTGGTATTTCTTGTTCTGGTACTTCT	34	4	4	123801-123826|123861-123898|123933-123970|124005-124027	NC_022877.1_108340-108315|NC_022877.1_108280-108243|NC_022877.1_108208-108171|NC_022877.1_108136-108114	NA	4	4	Orphan	cas3,RT,csa3,WYL,DinG,DEDDh,c2c9_V-U4,cas14j,Cas14u_CAS-V	NA|705aa|up_9|NC_022882.1_108814_110929_+,NA|71aa|up_4|NC_022882.1_116183_116396_-,NA|195aa|up_2|NC_022882.1_119233_119818_-,NA|170aa|down_0|NC_022882.1_125955_126465_-,NA|84aa|down_4|NC_022882.1_132324_132576_-,NA|85aa|down_6|NC_022882.1_133576_133831_-,NA|312aa|down_8|NC_022882.1_134907_135843_-	NA|705aa|up_9|NC_022882.1_108814_110929_+	NA	NA|323aa|up_8|NC_022882.1_110961_111930_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|359aa|up_7|NC_022882.1_111945_113022_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase	NA|269aa|up_6|NC_022882.1_113182_113989_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|134aa|up_5|NC_022882.1_115375_115777_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|71aa|up_4|NC_022882.1_116183_116396_-	NA	NA|410aa|up_3|NC_022882.1_117080_118310_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|195aa|up_2|NC_022882.1_119233_119818_-	NA	NA|376aa|up_1|NC_022882.1_119842_120970_-	pfam01551, Peptidase_M23, Peptidase family M23	RT|425aa|up_0|NC_022882.1_121233_122508_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|170aa|down_0|NC_022882.1_125955_126465_-	NA	NA|338aa|down_1|NC_022882.1_126523_127537_-	pfam12846, AAA_10, AAA-like domain	RT|609aa|down_2|NC_022882.1_127620_129447_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|184aa|down_3|NC_022882.1_131745_132297_-	pfam12648, TcpE, TcpE family	NA|84aa|down_4|NC_022882.1_132324_132576_-	NA	NA|326aa|down_5|NC_022882.1_132585_133563_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|85aa|down_6|NC_022882.1_133576_133831_-	NA	NA|281aa|down_7|NC_022882.1_134059_134902_-	pfam13814, Replic_Relax, Replication-relaxation	NA|312aa|down_8|NC_022882.1_134907_135843_-	NA	RT|630aa|down_9|NC_022882.1_135969_137859_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase
