assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000497265.2_ASM49726v2	NZ_AP014547	Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300	1	891728-891815	1	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,cas4,WYL	Type I-A	CGGCTGCTACAACGGCGTGTGCGGTGGCTGG	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL	NA|194aa|up_9|NZ_AP014547.1_881968_882550_+,NA	NA|194aa|up_9|NZ_AP014547.1_881968_882550_+	NA	NA|366aa|up_8|NZ_AP014547.1_882529_883627_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|244aa|up_7|NZ_AP014547.1_883642_884374_+	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional	NA|369aa|up_6|NZ_AP014547.1_884370_885477_+	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|226aa|up_5|NZ_AP014547.1_885473_886151_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|801aa|up_4|NZ_AP014547.1_886268_888671_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|278aa|up_3|NZ_AP014547.1_888700_889534_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|72aa|up_2|NZ_AP014547.1_889588_889804_+	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|379aa|up_1|NZ_AP014547.1_889826_890963_+	pfam03583, LIP, Secretory lipase	NA|148aa|up_0|NZ_AP014547.1_890999_891443_+	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|307aa|down_0|NZ_AP014547.1_891851_892772_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|188aa|down_1|NZ_AP014547.1_892863_893427_+	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain	NA|671aa|down_2|NZ_AP014547.1_893377_895390_-	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters	NA|52aa|down_3|NZ_AP014547.1_895550_895706_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|507aa|down_4|NZ_AP014547.1_895781_897302_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|145aa|down_5|NZ_AP014547.1_897282_897717_+	pfam05610, DUF779, Protein of unknown function (DUF779)	NA|597aa|down_6|NZ_AP014547.1_897810_899601_+	PLN03237, PLN03237, DNA topoisomerase 2; Provisional	NA|249aa|down_7|NZ_AP014547.1_899590_900337_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|261aa|down_8|NZ_AP014547.1_900462_901245_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|716aa|down_9|NZ_AP014547.1_902781_904929_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau
GCF_000497265.2_ASM49726v2	NZ_AP014547	Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300	2	4382353-4382471	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL	Orphan	TCGTTGATGGCACTGGTGTGGGCACCACCACCGACAGCCGTGCT	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL	NA|129aa|up_4|NZ_AP014547.1_4376882_4377269_-,NA|218aa|up_3|NZ_AP014547.1_4377347_4378001_-,NA|219aa|up_2|NZ_AP014547.1_4378020_4378677_-,NA|200aa|down_5|NZ_AP014547.1_4387451_4388051_-	NA|284aa|up_9|NZ_AP014547.1_4373440_4374292_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|160aa|up_8|NZ_AP014547.1_4374307_4374787_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|312aa|up_7|NZ_AP014547.1_4374928_4375864_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|156aa|up_6|NZ_AP014547.1_4375890_4376358_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|158aa|up_5|NZ_AP014547.1_4376415_4376889_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|129aa|up_4|NZ_AP014547.1_4376882_4377269_-	NA	NA|218aa|up_3|NZ_AP014547.1_4377347_4378001_-	NA	NA|219aa|up_2|NZ_AP014547.1_4378020_4378677_-	NA	NA|498aa|up_1|NZ_AP014547.1_4378681_4380175_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|628aa|up_0|NZ_AP014547.1_4380171_4382055_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|230aa|down_0|NZ_AP014547.1_4384107_4384797_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|294aa|down_1|NZ_AP014547.1_4384793_4385675_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_2|NZ_AP014547.1_4385692_4386055_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|308aa|down_3|NZ_AP014547.1_4386051_4386975_+	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|128aa|down_4|NZ_AP014547.1_4387055_4387439_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|200aa|down_5|NZ_AP014547.1_4387451_4388051_-	NA	NA|607aa|down_6|NZ_AP014547.1_4388232_4390053_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|790aa|down_7|NZ_AP014547.1_4390145_4392515_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|1011aa|down_8|NZ_AP014547.1_4392673_4395706_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|437aa|down_9|NZ_AP014547.1_4395713_4397024_+	PRK09265, PRK09265, aminotransferase AlaT; Validated
GCF_000497265.2_ASM49726v2	NZ_AP014547	Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300	3	4690975-4691069	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,cas4,WYL	Orphan	GCCAGCCCGCTGAACCCCAACAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,cas4,WYL	NA|279aa|up_6|NZ_AP014547.1_4682766_4683603_-,NA|298aa|up_4|NZ_AP014547.1_4684283_4685177_-,NA	NA|502aa|up_9|NZ_AP014547.1_4679157_4680663_+	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only]	NA|306aa|up_8|NZ_AP014547.1_4680659_4681577_+	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|374aa|up_7|NZ_AP014547.1_4681573_4682695_+	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|279aa|up_6|NZ_AP014547.1_4682766_4683603_-	NA	NA|177aa|up_5|NZ_AP014547.1_4683691_4684222_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|298aa|up_4|NZ_AP014547.1_4684283_4685177_-	NA	NA|757aa|up_3|NZ_AP014547.1_4685289_4687560_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|140aa|up_2|NZ_AP014547.1_4687996_4688416_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|201aa|up_1|NZ_AP014547.1_4688405_4689008_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|530aa|up_0|NZ_AP014547.1_4689051_4690641_-	PRK06188, PRK06188, acyl-CoA synthetase; Validated	NA|366aa|down_0|NZ_AP014547.1_4691131_4692229_-	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|222aa|down_1|NZ_AP014547.1_4692280_4692946_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|283aa|down_2|NZ_AP014547.1_4692955_4693804_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|287aa|down_3|NZ_AP014547.1_4693808_4694669_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|264aa|down_4|NZ_AP014547.1_4694760_4695552_+	PRK07814, PRK07814, SDR family oxidoreductase	NA|358aa|down_5|NZ_AP014547.1_4695564_4696638_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|197aa|down_6|NZ_AP014547.1_4696634_4697225_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|418aa|down_7|NZ_AP014547.1_4697347_4698601_+	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|139aa|down_8|NZ_AP014547.1_4698597_4699014_+	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|348aa|down_9|NZ_AP014547.1_4699100_4700144_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
