assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000496265.1_ASM49626v1	NC_022780	Pediococcus pentosaceus SL4, complete sequence	1	480897-481526	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2,cas3	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Type II-A,Type II-B,Type II-C	GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC,GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC	36,36,36	1	1	481263-481292	NC_022780.1_562713-562684	NA:NA:NA	8,9,9	9	TypeII-A,TypeII-B,TypeII-C	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA|131aa|up_9|NC_022780.1_467643_468036_-,NA|219aa|up_7|NC_022780.1_469120_469777_+,NA	NA|131aa|up_9|NC_022780.1_467643_468036_-	NA	NA|105aa|up_8|NC_022780.1_468198_468513_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|219aa|up_7|NC_022780.1_469120_469777_+	NA	NA|467aa|up_6|NC_022780.1_469909_471310_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_5|NC_022780.1_471358_473893_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|209aa|up_4|NC_022780.1_473941_474568_-	pfam09726, Macoilin, Macoilin family	cas9|1347aa|up_3|NC_022780.1_474759_478800_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|303aa|up_2|NC_022780.1_479007_479916_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NC_022780.1_479893_480199_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NC_022780.1_480195_480867_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|217aa|down_0|NC_022780.1_481658_482309_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NC_022780.1_482493_482778_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|540aa|down_2|NC_022780.1_482805_484425_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NC_022780.1_484768_486601_+	pfam13520, AA_permease_2, Amino acid permease	NA|387aa|down_4|NC_022780.1_486751_487912_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|218aa|down_5|NC_022780.1_487926_488580_-	pfam01205, UPF0029, Uncharacterized protein family UPF0029	cas3|440aa|down_6|NC_022780.1_488612_489932_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|144aa|down_7|NC_022780.1_490171_490603_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|NC_022780.1_490733_491288_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|787aa|down_9|NC_022780.1_491448_493809_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_000496265.1_ASM49626v1	NC_022780	Pediococcus pentosaceus SL4, complete sequence	2	687444-687549	2	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA|63aa|up_6|NC_022780.1_675473_675662_+,NA|244aa|down_1|NC_022780.1_691304_692036_-	NA|282aa|up_9|NC_022780.1_671787_672633_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|121aa|up_8|NC_022780.1_672632_672995_+	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|740aa|up_7|NC_022780.1_673049_675269_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NC_022780.1_675473_675662_+	NA	NA|89aa|up_5|NC_022780.1_675807_676074_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NC_022780.1_676073_677798_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NC_022780.1_677870_678644_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|392aa|up_2|NC_022780.1_678733_679909_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|NC_022780.1_679958_680975_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|345aa|up_0|NC_022780.1_680988_682023_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|578aa|down_0|NC_022780.1_689501_691235_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|244aa|down_1|NC_022780.1_691304_692036_-	NA	NA|397aa|down_2|NC_022780.1_692208_693399_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|489aa|down_3|NC_022780.1_693473_694940_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|188aa|down_4|NC_022780.1_694986_695550_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|211aa|down_5|NC_022780.1_695542_696175_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_6|NC_022780.1_696519_698937_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|562aa|down_7|NC_022780.1_699140_700826_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_8|NC_022780.1_700834_701554_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|280aa|down_9|NC_022780.1_701576_702416_-	cd01171, YXKO-related, B
GCF_000496265.1_ASM49626v1	NC_022780	Pediococcus pentosaceus SL4, complete sequence	3	1712969-1713081	3	CRISPRCasFinder	no	csa3	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	Type I-A	TGACTTCCTGAATCTAACTGTTGAACGCC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,cas3,DEDDh,WYL,DinG	NA,NA	NA|438aa|up_9|NC_022780.1_1701284_1702598_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|327aa|up_8|NC_022780.1_1702590_1703571_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|373aa|up_7|NC_022780.1_1703573_1704692_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|329aa|up_6|NC_022780.1_1704703_1705690_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|448aa|up_5|NC_022780.1_1705970_1707314_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|461aa|up_4|NC_022780.1_1707328_1708711_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|238aa|up_3|NC_022780.1_1708870_1709584_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|218aa|up_2|NC_022780.1_1709619_1710273_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|226aa|up_1|NC_022780.1_1710355_1711033_-	pfam01381, HTH_3, Helix-turn-helix	NA|212aa|up_0|NC_022780.1_1711297_1711933_-	pfam15983, DUF4767, Domain of unknown function (DUF4767)	csa3|107aa|down_0|NC_022780.1_1715535_1715856_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|182aa|down_1|NC_022780.1_1715947_1716493_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|288aa|down_2|NC_022780.1_1716470_1717334_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|280aa|down_3|NC_022780.1_1717536_1718376_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|602aa|down_4|NC_022780.1_1718795_1720601_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|371aa|down_5|NC_022780.1_1720743_1721856_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|279aa|down_6|NC_022780.1_1722009_1722846_+	pfam05067, Mn_catalase, Manganese containing catalase	NA|242aa|down_7|NC_022780.1_1722898_1723624_-	pfam00563, EAL, EAL domain	NA|401aa|down_8|NC_022780.1_1723620_1724823_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|477aa|down_9|NC_022780.1_1725503_1726934_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
