assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000495455.2_ASM49545v2	NZ_CP009974	Pseudomonas putida S12, complete genome	1	1383629-1383726	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,RT	Orphan	GCACCGATTACTGGCTGAAATCTGTATTGG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,RT,PD-DExK	NA,NA	NA|321aa|up_9|NZ_CP009974.1_1372632_1373595_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|340aa|up_8|NZ_CP009974.1_1373742_1374762_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|77aa|up_7|NZ_CP009974.1_1374856_1375087_+	PRK09459, pspG, envelope stress response protein PspG	NA|255aa|up_6|NZ_CP009974.1_1375353_1376118_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|401aa|up_5|NZ_CP009974.1_1376208_1377411_+	cd20378, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins	NA|287aa|up_4|NZ_CP009974.1_1377476_1378337_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|340aa|up_3|NZ_CP009974.1_1378338_1379358_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|251aa|up_2|NZ_CP009974.1_1379357_1380110_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|232aa|up_1|NZ_CP009974.1_1380109_1380805_+	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|426aa|up_0|NZ_CP009974.1_1380957_1382235_+	PRK12893, PRK12893, Zn-dependent hydrolase	NA|366aa|down_0|NZ_CP009974.1_1383790_1384888_-	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|130aa|down_1|NZ_CP009974.1_1384942_1385332_-	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|155aa|down_2|NZ_CP009974.1_1385333_1385798_-	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]	NA|215aa|down_3|NZ_CP009974.1_1385794_1386439_-	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]	NA|61aa|down_4|NZ_CP009974.1_1386435_1386618_-	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|161aa|down_5|NZ_CP009974.1_1386727_1387210_+	pfam12019, GspH, Type II transport protein GspH	NA|316aa|down_6|NZ_CP009974.1_1387286_1388234_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|146aa|down_7|NZ_CP009974.1_1388248_1388686_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|172aa|down_8|NZ_CP009974.1_1388678_1389194_-	PRK00376, lspA, lipoprotein signal peptidase	NA|944aa|down_9|NZ_CP009974.1_1389186_1392018_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_000495455.2_ASM49545v2	NZ_CP009974	Pseudomonas putida S12, complete genome	2	2420905-2421013	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,RT	Orphan	GGGGCTGCTCTGCAGCCCTTCGCGGGTGAACCCGCTCCTAC	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,RT,PD-DExK	NA,NA	NA|324aa|up_9|NZ_CP009974.1_2408503_2409475_+	PRK13821, thyA, thymidylate synthase; Provisional	NA|148aa|up_8|NZ_CP009974.1_2409593_2410037_-	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator	NA|753aa|up_7|NZ_CP009974.1_2410120_2412379_+	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|290aa|up_6|NZ_CP009974.1_2412388_2413258_+	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|353aa|up_5|NZ_CP009974.1_2413489_2414548_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|575aa|up_4|NZ_CP009974.1_2414549_2416274_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|342aa|up_3|NZ_CP009974.1_2416292_2417318_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|455aa|up_2|NZ_CP009974.1_2417577_2418942_-	pfam11981, DUF3482, Domain of unknown function (DUF3482)	NA|464aa|up_1|NZ_CP009974.1_2418934_2420326_-	pfam11067, DUF2868, Protein of unknown function (DUF2868)	NA|172aa|up_0|NZ_CP009974.1_2420380_2420896_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|464aa|down_0|NZ_CP009974.1_2421095_2422487_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|352aa|down_1|NZ_CP009974.1_2422731_2423787_+	cd04309, HAD_PSP_eu, phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase	NA|223aa|down_2|NZ_CP009974.1_2423795_2424464_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|285aa|down_3|NZ_CP009974.1_2424602_2425457_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|614aa|down_4|NZ_CP009974.1_2425527_2427369_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|399aa|down_5|NZ_CP009974.1_2427639_2428836_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|291aa|down_6|NZ_CP009974.1_2428957_2429830_+	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms]	NA|271aa|down_7|NZ_CP009974.1_2429833_2430646_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|84aa|down_8|NZ_CP009974.1_2430807_2431059_-	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|162aa|down_9|NZ_CP009974.1_2431160_2431646_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional
GCF_000495455.2_ASM49545v2	NZ_CP009974	Pseudomonas putida S12, complete genome	3	3143834-3143990	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL,RT	Orphan	GCGCCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGCAAAAA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,RT,PD-DExK	NA|102aa|up_4|NZ_CP009974.1_3140028_3140334_+,NA	NA|340aa|up_9|NZ_CP009974.1_3136460_3137480_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|88aa|up_8|NZ_CP009974.1_3137535_3137799_-	pfam07130, YebG, YebG protein	NA|157aa|up_7|NZ_CP009974.1_3138539_3139010_+	COG3223, COG3223, Predicted membrane protein [Function unknown]	NA|97aa|up_6|NZ_CP009974.1_3139013_3139304_-	pfam12021, DUF3509, Protein of unknown function (DUF3509)	NA|116aa|up_5|NZ_CP009974.1_3139424_3139772_-	pfam02482, Ribosomal_S30AE, Sigma 54 modulation protein / S30EA ribosomal protein	NA|102aa|up_4|NZ_CP009974.1_3140028_3140334_+	NA	NA|526aa|up_3|NZ_CP009974.1_3140330_3141908_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|109aa|up_2|NZ_CP009974.1_3141907_3142234_+	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|192aa|up_1|NZ_CP009974.1_3142239_3142815_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|327aa|up_0|NZ_CP009974.1_3142811_3143792_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|797aa|down_0|NZ_CP009974.1_3144089_3146480_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|292aa|down_1|NZ_CP009974.1_3146509_3147385_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|301aa|down_2|NZ_CP009974.1_3147570_3148473_+	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|325aa|down_3|NZ_CP009974.1_3148684_3149659_-	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|316aa|down_4|NZ_CP009974.1_3149835_3150783_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|510aa|down_5|NZ_CP009974.1_3150975_3152505_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|726aa|down_6|NZ_CP009974.1_3152501_3154679_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|67aa|down_7|NZ_CP009974.1_3154668_3154869_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|287aa|down_8|NZ_CP009974.1_3154879_3155740_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|151aa|down_9|NZ_CP009974.1_3155811_3156264_-	cd00293, USP_Like, Usp: Universal stress protein family
GCF_000495455.2_ASM49545v2	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	1	209956-210046	1	CRISPRCasFinder	no		DEDDh,PD-DExK	Orphan	ACTCCAGTTTCGCATGCTAAACCGG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL,RT,PD-DExK	NA|213aa|up_6|NZ_CP009975.1_200186_200825_-,NA|583aa|down_2|NZ_CP009975.1_214842_216591_+,NA|500aa|down_3|NZ_CP009975.1_216583_218083_+,NA|116aa|down_5|NZ_CP009975.1_219811_220159_-,NA|182aa|down_7|NZ_CP009975.1_221267_221813_-,NA|154aa|down_8|NZ_CP009975.1_221931_222393_+,NA|118aa|down_9|NZ_CP009975.1_222359_222713_-	NA|300aa|up_9|NZ_CP009975.1_196628_197528_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|481aa|up_8|NZ_CP009975.1_197702_199145_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|287aa|up_7|NZ_CP009975.1_199264_200125_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|213aa|up_6|NZ_CP009975.1_200186_200825_-	NA	NA|505aa|up_5|NZ_CP009975.1_200979_202494_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_4|NZ_CP009975.1_202511_203267_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|129aa|up_3|NZ_CP009975.1_203570_203957_+	pfam00072, Response_reg, Response regulator receiver domain	NA|163aa|up_2|NZ_CP009975.1_203946_204435_+	smart00260, CheW, Two component signalling adaptor domain	NA|675aa|up_1|NZ_CP009975.1_204431_206456_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|264aa|up_0|NZ_CP009975.1_206452_207244_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|311aa|down_0|NZ_CP009975.1_213008_213941_+	pfam01339, CheB_methylest, CheB methylesterase	NA|207aa|down_1|NZ_CP009975.1_214150_214771_-	PRK09354, recA, recombinase A; Provisional	NA|583aa|down_2|NZ_CP009975.1_214842_216591_+	NA	NA|500aa|down_3|NZ_CP009975.1_216583_218083_+	NA	NA|327aa|down_4|NZ_CP009975.1_218213_219194_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|116aa|down_5|NZ_CP009975.1_219811_220159_-	NA	NA|321aa|down_6|NZ_CP009975.1_220221_221184_-	pfam06834, TraU, TraU protein	NA|182aa|down_7|NZ_CP009975.1_221267_221813_-	NA	NA|154aa|down_8|NZ_CP009975.1_221931_222393_+	NA	NA|118aa|down_9|NZ_CP009975.1_222359_222713_-	NA
