assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000494875.1_ASM49487v1	NC_022737	Staphylococcus pasteuri SP1, complete sequence	1	924462-924548	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	Orphan	CTAACCATTAAAATGGAAGTACTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	NA,NA	NA|252aa|up_9|NC_022737.1_913346_914102_+	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional	NA|142aa|up_8|NC_022737.1_914138_914564_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|426aa|up_7|NC_022737.1_914680_915958_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|203aa|up_6|NC_022737.1_916120_916729_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|316aa|up_5|NC_022737.1_916790_917738_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|480aa|up_4|NC_022737.1_917808_919248_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|124aa|up_3|NC_022737.1_919628_920000_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|701aa|up_2|NC_022737.1_920938_923041_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|141aa|up_1|NC_022737.1_923117_923540_+	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|115aa|up_0|NC_022737.1_923902_924247_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|426aa|down_0|NC_022737.1_924744_926022_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|122aa|down_1|NC_022737.1_926273_926639_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|210aa|down_2|NC_022737.1_926767_927397_-	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|149aa|down_3|NC_022737.1_927561_928008_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|139aa|down_4|NC_022737.1_928246_928663_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|384aa|down_5|NC_022737.1_928716_929868_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|218aa|down_6|NC_022737.1_930297_930951_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|344aa|down_7|NC_022737.1_930973_932005_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|down_8|NC_022737.1_932014_932467_-	pfam13185, GAF_2, GAF domain	NA|226aa|down_9|NC_022737.1_932488_933166_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit
GCF_000494875.1_ASM49487v1	NC_022737	Staphylococcus pasteuri SP1, complete sequence	2	1119762-1119843	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	Orphan	TTTGAAATTCTCTATGTTGGGGCCC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	NA|69aa|up_9|NC_022737.1_1107321_1107528_+,NA	NA|69aa|up_9|NC_022737.1_1107321_1107528_+	NA	NA|795aa|up_8|NC_022737.1_1107740_1110125_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|up_7|NC_022737.1_1110219_1110426_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|up_6|NC_022737.1_1110470_1111469_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|387aa|up_5|NC_022737.1_1111490_1112651_-	PRK08068, PRK08068, transaminase; Reviewed	NA|502aa|up_4|NC_022737.1_1112847_1114353_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|288aa|up_3|NC_022737.1_1114365_1115229_-	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head	NA|252aa|up_2|NC_022737.1_1115570_1116326_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|475aa|up_1|NC_022737.1_1116785_1118210_-	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase	NA|352aa|up_0|NC_022737.1_1118307_1119363_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|189aa|down_0|NC_022737.1_1121499_1122066_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|315aa|down_1|NC_022737.1_1122311_1123256_+	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|79aa|down_2|NC_022737.1_1123268_1123505_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_3|NC_022737.1_1123559_1123937_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|272aa|down_4|NC_022737.1_1123968_1124784_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|101aa|down_5|NC_022737.1_1124801_1125104_-	pfam10078, DUF2316, Uncharacterized protein conserved in bacteria (DUF2316)	NA|184aa|down_6|NC_022737.1_1125229_1125781_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_7|NC_022737.1_1125785_1126490_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|334aa|down_8|NC_022737.1_1126557_1127559_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|278aa|down_9|NC_022737.1_1127602_1128436_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000494875.1_ASM49487v1	NC_022737	Staphylococcus pasteuri SP1, complete sequence	3	1369966-1370793	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	 Type II-B,Type II-C,Type II-B,Type II-A, or Type II-C?	GTTTCACTCATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTCATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTCATACCTAAAATTACAGAGTACTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	12,12,11	12	TypeII-B,TypeII-C,TypeII-B,TypeII-A,orTypeII-C?	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	NA|177aa|up_8|NC_022737.1_1358523_1359054_-,NA|216aa|up_6|NC_022737.1_1360360_1361008_-,NA|336aa|down_0|NC_022737.1_1370812_1371820_-,NA|30aa|down_5|NC_022737.1_1378428_1378518_-	NA|605aa|up_9|NC_022737.1_1356020_1357835_-	PRK08293, PRK08293, 3-hydroxyacyl-CoA dehydrogenase	NA|177aa|up_8|NC_022737.1_1358523_1359054_-	NA	NA|189aa|up_7|NC_022737.1_1359739_1360306_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|216aa|up_6|NC_022737.1_1360360_1361008_-	NA	NA|279aa|up_5|NC_022737.1_1361824_1362661_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|312aa|up_4|NC_022737.1_1362914_1363850_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|652aa|up_3|NC_022737.1_1363864_1365820_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|620aa|up_2|NC_022737.1_1365899_1367759_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|113aa|up_1|NC_022737.1_1367877_1368216_-	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|578aa|up_0|NC_022737.1_1368221_1369955_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|336aa|down_0|NC_022737.1_1370812_1371820_-	NA	cas2|103aa|down_1|NC_022737.1_1371833_1372142_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_2|NC_022737.1_1372146_1373049_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1055aa|down_3|NC_022737.1_1373051_1376216_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|313aa|down_4|NC_022737.1_1377119_1378058_-	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|30aa|down_5|NC_022737.1_1378428_1378518_-	NA	NA|393aa|down_6|NC_022737.1_1378896_1380075_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|down_7|NC_022737.1_1380086_1380836_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_8|NC_022737.1_1380828_1381644_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_9|NC_022737.1_1381640_1382510_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000494875.1_ASM49487v1	NC_022737	Staphylococcus pasteuri SP1, complete sequence	4	1376467-1376963	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	 Type II-B,Type II-C,Type II-B,Type II-A, or Type II-C?	GTTTCACTCATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTCATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTCATACCTAAAATTACAGAGTACTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	7,7,6	7	TypeII-B,TypeII-C,TypeII-B,TypeII-A,orTypeII-C?	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	NA|336aa|up_3|NC_022737.1_1370812_1371820_-,NA|30aa|down_1|NC_022737.1_1378428_1378518_-	NA|279aa|up_9|NC_022737.1_1361824_1362661_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|312aa|up_8|NC_022737.1_1362914_1363850_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|652aa|up_7|NC_022737.1_1363864_1365820_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|620aa|up_6|NC_022737.1_1365899_1367759_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|113aa|up_5|NC_022737.1_1367877_1368216_-	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|578aa|up_4|NC_022737.1_1368221_1369955_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|336aa|up_3|NC_022737.1_1370812_1371820_-	NA	cas2|103aa|up_2|NC_022737.1_1371833_1372142_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|up_1|NC_022737.1_1372146_1373049_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1055aa|up_0|NC_022737.1_1373051_1376216_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|313aa|down_0|NC_022737.1_1377119_1378058_-	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|30aa|down_1|NC_022737.1_1378428_1378518_-	NA	NA|393aa|down_2|NC_022737.1_1378896_1380075_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|down_3|NC_022737.1_1380086_1380836_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_4|NC_022737.1_1380828_1381644_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NC_022737.1_1381640_1382510_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|down_6|NC_022737.1_1382506_1383442_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|down_7|NC_022737.1_1383454_1385053_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|431aa|down_8|NC_022737.1_1385120_1386413_-	pfam10100, DUF2338, Uncharacterized protein conserved in bacteria (DUF2338)	NA|272aa|down_9|NC_022737.1_1386405_1387221_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family
GCF_000494875.1_ASM49487v1	NC_022737	Staphylococcus pasteuri SP1, complete sequence	5	1732749-1732831	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	Orphan	AGAAACTCTAAGCATTAAAATGC	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	NA,NA	NA|467aa|up_9|NC_022737.1_1726233_1727634_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|130aa|up_8|NC_022737.1_1727635_1728025_+	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|249aa|up_7|NC_022737.1_1728029_1728776_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|176aa|up_6|NC_022737.1_1728775_1729303_+	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only]	NA|194aa|up_5|NC_022737.1_1729373_1729955_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|48aa|up_4|NC_022737.1_1730079_1730223_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|61aa|up_3|NC_022737.1_1730274_1730457_+	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|183aa|up_2|NC_022737.1_1730467_1731016_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|141aa|up_1|NC_022737.1_1731196_1731619_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|232aa|up_0|NC_022737.1_1731835_1732531_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|167aa|down_0|NC_022737.1_1733066_1733567_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|123aa|down_1|NC_022737.1_1733606_1733975_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|203aa|down_2|NC_022737.1_1734134_1734743_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|1184aa|down_3|NC_022737.1_1734960_1738512_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1199aa|down_4|NC_022737.1_1738675_1742272_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|87aa|down_5|NC_022737.1_1742420_1742681_+	PRK13600, PRK13600, putative ribosomal protein L7Ae-like; Provisional	NA|138aa|down_6|NC_022737.1_1742770_1743184_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|down_7|NC_022737.1_1743255_1743726_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|694aa|down_8|NC_022737.1_1743845_1745927_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|395aa|down_9|NC_022737.1_1746158_1747343_+	PRK00049, PRK00049, elongation factor Tu; Reviewed
GCF_000494875.1_ASM49487v1	NC_022737	Staphylococcus pasteuri SP1, complete sequence	6	2547900-2547995	6	CRISPRCasFinder	no		DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	Orphan	GATTCAAAAGGAATACACTCGTCTTGGCATCCGA	34	1	1	2547934-2547961	NC_022737.1_2548056-2548083	NA	1	1	Orphan	DinG,cas3,DEDDh,cas14j,csa3,WYL,cas2,cas1,cas9	NA|117aa|up_8|NC_022737.1_2537563_2537914_-,NA	NA|333aa|up_9|NC_022737.1_2536448_2537447_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|117aa|up_8|NC_022737.1_2537563_2537914_-	NA	NA|604aa|up_7|NC_022737.1_2538113_2539925_+	cd09609, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|216aa|up_6|NC_022737.1_2540044_2540692_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|292aa|up_5|NC_022737.1_2540695_2541571_-	PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional	NA|310aa|up_4|NC_022737.1_2541655_2542585_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_022737.1_2542586_2543513_-	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]	NA|327aa|up_2|NC_022737.1_2543699_2544680_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|303aa|up_1|NC_022737.1_2545020_2545929_-	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|534aa|up_0|NC_022737.1_2546074_2547676_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|402aa|down_0|NC_022737.1_2548437_2549643_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|330aa|down_1|NC_022737.1_2549701_2550691_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|295aa|down_2|NC_022737.1_2550692_2551577_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|241aa|down_3|NC_022737.1_2551576_2552299_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|240aa|down_4|NC_022737.1_2552322_2553042_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|384aa|down_5|NC_022737.1_2553223_2554375_+	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|359aa|down_6|NC_022737.1_2554378_2555455_+	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane]	NA|422aa|down_7|NC_022737.1_2555457_2556723_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|67aa|down_8|NC_022737.1_2557011_2557212_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|103aa|down_9|NC_022737.1_2557398_2557707_-	COG4699, COG4699, Uncharacterized protein conserved in bacteria [Function unknown]
