The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	1143974	1270423	4798531	portal,terminase,capsid,integrase,plate,tail,holin,lysis,tRNA,head	Salmonella_phage(46.91%)	124	1148998:1149015	1219514:1219531
WP_001650427.1|1143974_1144556_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	55.8	1.5e-51
WP_001536726.1|1144885_1145911_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	100.0	9.9e-203
WP_000052560.1|1145914_1146547_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000102104.1|1146663_1146903_+	hypothetical protein	NA	A0A1S6KZZ6	Salmonella_phage	98.7	8.8e-38
WP_000460862.1|1146938_1147448_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	92.9	5.1e-83
WP_000957776.1|1147455_1147689_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	59.1	4.7e-12
WP_000166366.1|1147636_1148095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000963195.1|1148314_1148656_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	85.0	4.2e-49
WP_001244234.1|1148723_1148957_+	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	2.0e-26
WP_000785509.1|1148956_1149184_+	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	93.3	1.3e-35
1148998:1149015	attL	AGAACGCCAGCGCCACAT	NA	NA	NA	NA
WP_000104120.1|1149180_1150038_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	80.4	2.7e-129
WP_001154443.1|1152595_1152784_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	98.4	6.1e-26
WP_001217560.1|1152795_1153029_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	89.6	1.2e-31
WP_014344394.1|1153134_1154244_+	hypothetical protein	NA	Q6SE88	Lactobacillus_prophage	38.9	2.9e-67
WP_000698373.1|1154221_1154599_+	ASCH domain-containing protein	NA	Q6SE87	Lactobacillus_prophage	50.0	3.4e-28
WP_000059520.1|1154837_1156502_+	hypothetical protein	NA	X2KLG0	Campylobacter_phage	24.9	4.5e-11
WP_000520367.1|1156548_1157577_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	92.9	4.9e-178
WP_001098457.1|1157576_1159343_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	98.0	0.0e+00
WP_000216226.1|1159485_1160319_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	84.5	1.3e-120
WP_000730758.1|1160335_1161397_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	99.7	6.0e-195
WP_000059168.1|1161400_1162051_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
WP_000673523.1|1162144_1162609_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.6	6.4e-77
WP_000868193.1|1162608_1162812_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	98.5	1.9e-33
WP_000171565.1|1162815_1163031_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_001069919.1|1163011_1163521_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	98.8	2.2e-94
WP_000731036.1|1163525_1163903_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	100.0	8.1e-62
WP_001747966.1|1163902_1164328_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	98.6	8.5e-68
WP_001039963.1|1164423_1164855_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	5.6e-75
WP_000343945.1|1164847_1165297_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.1	2.5e-65
WP_001099507.1|1165308_1166754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000993746.1|1166833_1167412_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.0	8.8e-108
WP_000177401.1|1167408_1167768_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	98.3	1.4e-58
WP_000268275.1|1167754_1168663_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	98.3	3.2e-157
WP_001086806.1|1168655_1169261_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.5	8.3e-117
WP_001274653.1|1169257_1171024_+|tail	tail fiber protein	tail	A0A1S6KZZ8	Salmonella_phage	52.3	4.7e-136
WP_000680168.1|1171026_1171554_+|tail	tail protein	tail	NA	NA	NA	NA
WP_000046109.1|1171684_1172857_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.7	5.7e-223
WP_001207647.1|1172866_1173382_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	100.0	9.3e-93
WP_001280962.1|1173436_1173739_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
WP_000763316.1|1173753_1173873_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
WP_001282774.1|1173865_1176673_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.4	0.0e+00
WP_000980408.1|1176669_1177155_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	1.3e-67
WP_001102264.1|1177151_1178252_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	95.4	3.4e-193
WP_000980498.1|1178320_1178539_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
WP_072101449.1|1179090_1180254_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000196133.1|1180261_1182442_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_000533865.1|1182438_1183848_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_001237691.1|1183912_1195387_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_001518569.1|1196001_1196484_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_000242603.1|1196633_1197110_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001112990.1|1197099_1197390_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203445.1|1197555_1197894_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000880958.1|1198042_1199704_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001059155.1|1199789_1200668_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001518875.1|1200791_1201382_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001294018.1|1201416_1202022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127172650.1|1202142_1203429_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001537507.1|1203448_1204240_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_000460052.1|1204405_1205767_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256453.1|1206019_1206268_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043266.1|1206286_1206835_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000469804.1|1206879_1207647_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000065257.1|1207687_1208035_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_001030981.1|1208191_1209412_-	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_001212379.1|1209404_1209923_-	YfiR family protein	NA	NA	NA	NA	NA
WP_001168062.1|1210362_1211433_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_000225191.1|1211442_1212564_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000210991.1|1212621_1213530_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000200080.1|1213490_1214651_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_010989056.1|1214750_1214798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000615542.1|1214961_1215981_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0F7LBR0	Escherichia_phage	58.2	1.4e-108
WP_000185337.1|1216020_1216326_-	helix-turn-helix transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	47.5	1.6e-15
WP_000661531.1|1216423_1216762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000645096.1|1216787_1217120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681787.1|1217129_1217699_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	46.3	2.6e-43
WP_000922120.1|1217701_1217920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994501.1|1217958_1220616_+	hypothetical protein	NA	A0A077K8T2	Ralstonia_phage	47.5	1.2e-244
1219514:1219531	attR	ATGTGGCGCTGGCGTTCT	NA	NA	NA	NA
WP_000088096.1|1220643_1220967_-	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	73.1	1.3e-36
WP_000746494.1|1220966_1221986_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	68.5	1.3e-135
WP_001151938.1|1221982_1223767_-	hypothetical protein	NA	F1BUM5	Cronobacter_phage	69.7	1.8e-247
WP_000273112.1|1223824_1224814_+|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	52.3	2.5e-46
WP_001176503.1|1224848_1225877_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	3.7e-133
WP_001177276.1|1225888_1226587_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	3.6e-63
WP_000491223.1|1226685_1227138_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	64.7	1.2e-48
WP_000080871.1|1227134_1227617_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	48.7	2.3e-37
WP_000606933.1|1227613_1228318_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.5	4.0e-70
WP_000220184.1|1228314_1229442_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	82.9	8.1e-174
WP_000166745.1|1229438_1229894_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	71.5	1.7e-58
WP_001154426.1|1229906_1230203_+|holin	holin	holin	C7BGD7	Burkholderia_phage	48.2	2.4e-16
WP_000175558.1|1230199_1230541_+	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
WP_000376378.1|1230540_1230873_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	4.4e-35
WP_001747519.1|1230799_1231033_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	83.1	1.7e-30
WP_000411500.1|1231019_1231277_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	2.3e-20
WP_000811100.1|1231464_1233432_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.7	1.9e-271
WP_001002797.1|1233428_1233758_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
WP_000136927.1|1233754_1234939_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.6	5.1e-179
WP_001001824.1|1234931_1235519_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
WP_000084303.1|1235528_1237541_+|tail	tail protein	tail	F1BUK3	Cronobacter_phage	81.2	2.1e-148
WP_001215677.1|1237543_1238074_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	32.4	4.4e-13
WP_000267954.1|1238063_1238789_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	3.8e-68
WP_000200791.1|1238760_1239306_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	71.4	3.5e-58
WP_001747522.1|1239308_1241009_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	1.7e-223
WP_000777801.1|1242126_1243599_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_001156921.1|1243734_1244121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000178449.1|1244278_1244617_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_125011025.1|1244758_1244944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000197660.1|1244888_1245626_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000079130.1|1245757_1246738_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000992634.1|1246734_1247466_+	polyphenol oxidase	NA	NA	NA	NA	NA
WP_001235092.1|1247595_1250169_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
WP_000985658.1|1256224_1256680_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	49.3	8.6e-34
WP_000807814.1|1256783_1258085_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.1	3.4e-43
WP_001264468.1|1258081_1258405_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000949286.1|1258447_1259803_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_000082651.1|1259917_1262578_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000183644.1|1262631_1263312_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_001098732.1|1263384_1263804_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000997368.1|1264007_1265045_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_000179975.1|1265160_1265850_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	50.0	2.1e-55
WP_000627811.1|1266168_1266552_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000188414.1|1266613_1267201_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_001747585.1|1267303_1268203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219174.1|1268220_1269555_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_000083343.1|1269685_1270423_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	1739883	1749054	4798531	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1739883_1740831_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824850.1|1740814_1741546_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1741526_1741634_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1741693_1742425_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272851.1|1742647_1744333_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	6.2e-279
WP_000598637.1|1744329_1745049_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1745095_1745563_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1745619_1746150_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703143.1|1746321_1746780_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
WP_000195330.1|1747020_1749054_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	1825084	1835591	4798531		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111843.1|1825084_1826488_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
WP_000981469.1|1826665_1827559_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697849.1|1827935_1829021_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.0e-101
WP_001023665.1|1829020_1829920_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	1.1e-29
WP_000857531.1|1829967_1830846_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_000973710.1|1830846_1831398_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
WP_000018219.1|1831403_1832378_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648785.1|1832393_1833167_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565903.1|1833171_1834251_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000126349.1|1834277_1835591_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	2843471	2880707	4798531	transposase,plate	Shigella_phage(20.0%)	29	NA	NA
WP_109188131.1|2843471_2844634_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.8	1.2e-47
WP_000739389.1|2844827_2845793_-	Sel1 repeat protein	NA	NA	NA	NA	NA
WP_000014621.1|2845860_2850027_-	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	40.6	1.4e-21
WP_000103453.1|2850095_2852237_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.4	2.9e-23
WP_001142966.1|2852459_2852978_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000031252.1|2853606_2854110_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000524265.1|2854139_2854352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000058004.1|2854400_2855873_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000611701.1|2855869_2856286_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000393863.1|2856290_2858144_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000509052.1|2858107_2859196_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000796942.1|2859220_2860507_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_130549539.1|2860533_2861037_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000246455.1|2861039_2862371_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_000343978.1|2862375_2863134_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000614296.1|2863146_2865882_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.5	2.9e-84
WP_000089147.1|2865878_2866616_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_000365805.1|2866617_2868030_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_001137105.1|2868108_2871570_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_000076070.1|2871580_2872942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000002328.1|2872960_2873440_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_001139255.1|2873463_2874306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006496204.1|2876590_2876722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001216386.1|2876750_2877197_+	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_000928422.1|2877237_2877750_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001022123.1|2877769_2878210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001227394.1|2878218_2878590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000623370.1|2878713_2879172_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_100148601.1|2879452_2880707_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	2.4e-17
>prophage 5
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	3024947	3034295	4798531	protease,integrase	Ralstonia_phage(16.67%)	9	3019370:3019384	3033031:3033045
3019370:3019384	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001747671.1|3024947_3025325_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.0e-19
WP_001117984.1|3025486_3025684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001747668.1|3026958_3027435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071591100.1|3027406_3027736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000934057.1|3027931_3030208_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	1.1e-164
WP_000520789.1|3030238_3030559_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3030882_3031104_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125885.1|3031233_3033180_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	2.0e-39
3033031:3033045	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201750.1|3033176_3034295_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 6
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	4035140	4101612	4798531	transposase,tRNA,integrase,tail	Liberibacter_phage(30.77%)	59	4043108:4043124	4104449:4104465
WP_000749992.1|4035140_4036106_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	53.8	8.2e-66
WP_001188919.1|4036584_4037826_+	multidrug efflux MFS transporter MdtM	NA	NA	NA	NA	NA
WP_001033027.1|4037912_4039184_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000233266.1|4039403_4040588_+	MFS transporter	NA	NA	NA	NA	NA
WP_000068752.1|4041459_4042131_+	YjiH family protein	NA	NA	NA	NA	NA
WP_000211979.1|4042127_4042589_+	membrane protein	NA	NA	NA	NA	NA
WP_001113057.1|4042601_4043774_+	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
4043108:4043124	attL	TTCCGCCGCGCCCAGCG	NA	NA	NA	NA
WP_000383509.1|4043892_4044801_+	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA	NA
WP_000683250.1|4044806_4045541_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_000907671.1|4045779_4046310_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_001094623.1|4047027_4048041_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000841654.1|4048041_4048815_-	Uxu operon transcriptional regulator	NA	NA	NA	NA	NA
WP_000588696.1|4049164_4049830_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_001654330.1|4049846_4050308_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_000556763.1|4050512_4051424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000864870.1|4051775_4052384_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_001054380.1|4052871_4053129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077905762.1|4053133_4054765_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000484493.1|4055315_4056041_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000199890.1|4056518_4057394_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_000941935.1|4057746_4058169_-	fosfomycin resistance glutathione transferase FosA7.2	NA	NA	NA	NA	NA
WP_000481469.1|4059663_4062726_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	70.7	0.0e+00
WP_000139625.1|4062728_4063877_-	restriction endonuclease subunit S	NA	A0A240FAT6	Liberibacter_phage	75.0	1.8e-64
WP_000106060.1|4063877_4065377_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	78.5	2.1e-206
WP_000172636.1|4065373_4066873_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U4	Liberibacter_phage	77.4	3.1e-229
WP_000210270.1|4067170_4068154_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_006495884.1|4068422_4068800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000542997.1|4068946_4070143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077905772.1|4070331_4071321_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_001255026.1|4071632_4072961_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_001099274.1|4072965_4073271_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_130549551.1|4073548_4073773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006495888.1|4074263_4074488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100229112.1|4074850_4075962_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	1.7e-06
WP_001748005.1|4076025_4076262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000121182.1|4076378_4077767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001052203.1|4077766_4079779_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_001055457.1|4079775_4080744_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
WP_001748007.1|4081275_4081569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031602458.1|4082670_4083126_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_000142420.1|4085018_4085945_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_096322988.1|4085990_4087246_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
WP_001199743.1|4087625_4087934_-	CcdB family protein	NA	NA	NA	NA	NA
WP_000016244.1|4087936_4088176_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA	NA
WP_000254751.1|4088284_4088533_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_001280979.1|4089834_4092468_-|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	31.3	5.8e-106
WP_001747644.1|4092460_4092580_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_001292737.1|4092594_4092906_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	66.0	2.4e-27
WP_006501160.1|4092925_4093105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001185338.1|4093282_4093555_-	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	46.9	6.3e-08
WP_001066192.1|4093554_4094316_-	septation initiation protein	NA	NA	NA	NA	NA
WP_000211874.1|4094716_4097389_-	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
WP_001075576.1|4097385_4097769_-	DUF5375 family protein	NA	NA	NA	NA	NA
WP_001027149.1|4097765_4098050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001247004.1|4098081_4098441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071591111.1|4098433_4099018_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
WP_000455466.1|4099079_4099310_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_001066528.1|4099680_4100319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000772651.1|4100349_4101612_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	35.6	2.8e-66
4104449:4104465	attR	CGCTGGGCGCGGCGGAA	NA	NA	NA	NA
>prophage 7
NZ_CP015024	Salmonella enterica subsp. enterica serovar Agona str. 392869-2 chromosome, complete genome	4798531	4379659	4426703	4798531	plate,tRNA,tail	Burkholderia_phage(40.91%)	49	NA	NA
WP_001182229.1|4379659_4380658_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039322.1|4380745_4382056_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416271.1|4382302_4382818_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|4382916_4383126_-	CsbD family protein	NA	NA	NA	NA	NA
WP_001575282.1|4383147_4383261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128112.1|4383257_4384583_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|4384761_4385370_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002900.1|4385478_4385847_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|4386017_4388438_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|4388536_4389409_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019230.1|4389422_4389920_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782497.1|4390100_4391018_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973644.1|4391181_4392540_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|4392628_4393738_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695420.1|4394099_4395290_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000382563.1|4395421_4396966_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252085.1|4396980_4397871_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982752.1|4398036_4398447_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_000750800.1|4398589_4400686_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977889.1|4400685_4401423_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_125469230.1|4401419_4402088_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_023165043.1|4402121_4402364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000790027.1|4402807_4404457_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136394.1|4404801_4406151_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|4406281_4406629_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226439.1|4407205_4407493_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_001270445.1|4407495_4408101_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	5.9e-62
WP_000777266.1|4408113_4408428_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449437.1|4408586_4409042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875314.1|4409038_4409236_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729845.1|4409225_4410653_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.6	2.8e-195
WP_000907494.1|4410652_4411177_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003644.1|4411228_4411546_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|4411505_4411634_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001262488.1|4411730_4414085_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	3.1e-66
WP_000271418.1|4414084_4415038_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	3.9e-36
WP_001269716.1|4415037_4415247_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000818151.1|4415234_4416278_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.3	8.5e-77
WP_000679392.1|4416287_4417010_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000593184.1|4417337_4417700_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000703629.1|4417696_4418626_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000632050.1|4418625_4420173_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_001093501.1|4420336_4420696_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000951740.1|4420686_4421802_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.2	2.9e-99
WP_000359502.1|4421794_4422427_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_001747515.1|4422429_4424175_+|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.2e-51
WP_023785434.1|4424179_4424785_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000084338.1|4424781_4425237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000587738.1|4425974_4426703_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
