assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000487935.2_ASM48793v2	NZ_CP017723	Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 chromosome, complete genome	1	592102-592202	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|177aa|down_0|NZ_CP017723.1_593721_594252_-	NA|355aa|up_9|NZ_CP017723.1_577029_578094_+	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|448aa|up_8|NZ_CP017723.1_578179_579523_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_7|NZ_CP017723.1_580150_580603_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_6|NZ_CP017723.1_580630_582133_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|134aa|up_5|NZ_CP017723.1_585057_585459_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP017723.1_585458_586403_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP017723.1_586553_586823_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP017723.1_587064_589200_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP017723.1_589309_590194_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP017723.1_590299_590380_+	NF033440, small_YrbN, protein YrbN	NA|177aa|down_0|NZ_CP017723.1_593721_594252_-	NA	NA|240aa|down_1|NZ_CP017723.1_594410_595130_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_2|NZ_CP017723.1_595107_596115_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_3|NZ_CP017723.1_596292_597189_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_4|NZ_CP017723.1_597179_598175_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_5|NZ_CP017723.1_598391_598916_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_6|NZ_CP017723.1_598909_599413_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_7|NZ_CP017723.1_599399_599717_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_8|NZ_CP017723.1_599754_600198_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_9|NZ_CP017723.1_600177_600696_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus
GCF_000487935.2_ASM48793v2	NZ_CP017723	Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 chromosome, complete genome	2	971388-972758	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	19,22,22,19	22	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|447aa|up_9|NZ_CP017723.1_954405_955746_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|NZ_CP017723.1_955766_957107_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|NZ_CP017723.1_957184_958327_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_6|NZ_CP017723.1_958370_961127_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|NZ_CP017723.1_961184_962480_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|119aa|up_4|NZ_CP017723.1_964850_965207_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_3|NZ_CP017723.1_965172_965469_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|546aa|up_2|NZ_CP017723.1_967265_968903_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP017723.1_968985_970284_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP017723.1_970419_971091_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP017723.1_972855_973653_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP017723.1_973740_974103_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP017723.1_974526_976326_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP017723.1_976325_978038_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP017723.1_978113_978848_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP017723.1_979060_980014_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP017723.1_980457_983121_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_7|NZ_CP017723.1_983132_984692_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP017723.1_984688_985249_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP017723.1_985262_986321_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_000487935.2_ASM48793v2	NZ_CP017723	Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 chromosome, complete genome	3	989017-989412	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	6,6	6	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP017723.1_978113_978848_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP017723.1_979060_980014_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP017723.1_980457_983121_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP017723.1_983132_984692_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP017723.1_984688_985249_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP017723.1_985262_986321_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP017723.1_986331_987078_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP017723.1_987059_987710_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP017723.1_987706_988627_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP017723.1_988626_988920_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP017723.1_989426_990473_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP017723.1_990723_991632_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP017723.1_991641_993081_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP017723.1_993067_993673_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP017723.1_993690_994047_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP017723.1_994237_994549_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP017723.1_994567_995278_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|350aa|down_7|NZ_CP017723.1_995754_996804_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP017723.1_996784_997546_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP017723.1_997539_998166_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_000487935.2_ASM48793v2	NZ_CP017723	Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 chromosome, complete genome	4	3133769-3133873	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTATCGGATGGTTTATCGCGTGGTTCATCGGGTGAA	36	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|134aa|up_4|NZ_CP017723.1_3129943_3130345_-,NA|87aa|down_0|NZ_CP017723.1_3134285_3134546_-,NA|101aa|down_6|NZ_CP017723.1_3137967_3138270_+	NA|63aa|up_9|NZ_CP017723.1_3128225_3128414_-	pfam06322, Phage_NinH, Phage NinH protein	NA|121aa|up_8|NZ_CP017723.1_3128410_3128773_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP017723.1_3128769_3129060_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|241aa|up_6|NZ_CP017723.1_3129059_3129782_-	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|70aa|up_5|NZ_CP017723.1_3129774_3129984_-	pfam05810, NinF, NinF protein	NA|134aa|up_4|NZ_CP017723.1_3129943_3130345_-	NA	NA|59aa|up_3|NZ_CP017723.1_3130347_3130524_-	pfam05322, NinE, NINE Protein	NA|278aa|up_2|NZ_CP017723.1_3130532_3131366_-	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|149aa|up_1|NZ_CP017723.1_3131362_3131809_-	pfam05772, NinB, NinB protein	NA|459aa|up_0|NZ_CP017723.1_3131989_3133366_-	TIGR00665, DnaB, replicative DNA helicase	NA|87aa|down_0|NZ_CP017723.1_3134285_3134546_-	NA	NA|94aa|down_1|NZ_CP017723.1_3134582_3134864_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NZ_CP017723.1_3134974_3135190_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_3|NZ_CP017723.1_3135300_3135990_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|360aa|down_4|NZ_CP017723.1_3136153_3137233_+	pfam10546, P63C, P63C domain	NA|70aa|down_5|NZ_CP017723.1_3137379_3137589_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|101aa|down_6|NZ_CP017723.1_3137967_3138270_+	NA	NA|193aa|down_7|NZ_CP017723.1_3138290_3138869_-	pfam14163, SieB, Super-infection exclusion protein B	NA|190aa|down_8|NZ_CP017723.1_3139061_3139631_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|53aa|down_9|NZ_CP017723.1_3139962_3140121_+	pfam02061, Lambda_CIII, Lambda Phage CIII
