assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000487915.2_ASM48791v2	NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	1	166625-167671	1,1,1,2,2	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,PD-DExK,DEDDh,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	1	1	166960-166985	NZ_CP007532.1_2287354-2287379	I-E:I-E:I-E:I-E:I-E	15,16,16,16,15	16	TypeI-E	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,PD-DExK,DEDDh,DinG	NA,NA	NA|254aa|up_9|NZ_CP007532.1_158491_159253_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP007532.1_159233_160283_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP007532.1_160279_160759_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP007532.1_160758_161469_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP007532.1_161487_161799_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP007532.1_161989_162313_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP007532.1_162363_162969_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP007532.1_162955_164395_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP007532.1_164404_165313_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP007532.1_165563_166610_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP007532.1_167776_168061_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP007532.1_168060_168981_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP007532.1_168977_169628_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP007532.1_169609_170356_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP007532.1_170366_171425_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP007532.1_171438_171999_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP007532.1_171995_173552_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP007532.1_173563_176227_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP007532.1_176670_177624_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP007532.1_177711_178446_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000487915.2_ASM48791v2	NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	2	183816-184637	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,PD-DExK,DEDDh,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,PD-DExK,DEDDh,DinG	NA,NA	cas7|353aa|up_9|NZ_CP007532.1_170366_171425_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP007532.1_171438_171999_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP007532.1_171995_173552_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP007532.1_173563_176227_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP007532.1_176670_177624_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP007532.1_177711_178446_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP007532.1_178521_180234_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP007532.1_180233_182033_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP007532.1_182468_182831_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP007532.1_182920_183718_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP007532.1_184933_185605_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP007532.1_185740_187039_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP007532.1_187121_188759_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP007532.1_188986_189787_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP007532.1_190556_190853_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP007532.1_190818_191175_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|750aa|down_6|NZ_CP007532.1_191245_193495_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP007532.1_193546_194842_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP007532.1_194899_197656_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP007532.1_197699_198842_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_000487915.2_ASM48791v2	NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	3	1936292-1936368	4	CRISPRCasFinder	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,PD-DExK,DEDDh,DinG	Orphan	CAGATGTAGGCCTGAGAAGCGTAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,PD-DExK,DEDDh,DinG	NA|139aa|up_5|NZ_CP007532.1_1928898_1929315_+,NA	NA|429aa|up_9|NZ_CP007532.1_1925221_1926508_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|up_8|NZ_CP007532.1_1926504_1926792_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|447aa|up_7|NZ_CP007532.1_1926939_1928280_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|77aa|up_6|NZ_CP007532.1_1928368_1928599_+	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|139aa|up_5|NZ_CP007532.1_1928898_1929315_+	NA	NA|97aa|up_4|NZ_CP007532.1_1929538_1929829_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|630aa|up_3|NZ_CP007532.1_1930726_1932616_+	COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]	NA|177aa|up_2|NZ_CP007532.1_1933166_1933697_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|up_1|NZ_CP007532.1_1933689_1935552_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|up_0|NZ_CP007532.1_1935750_1936230_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|283aa|down_0|NZ_CP007532.1_1936388_1937237_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_1|NZ_CP007532.1_1937247_1937625_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|down_2|NZ_CP007532.1_1937627_1938449_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|down_3|NZ_CP007532.1_1938445_1939435_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|down_4|NZ_CP007532.1_1939434_1940721_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|787aa|down_5|NZ_CP007532.1_1940774_1943135_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|271aa|down_6|NZ_CP007532.1_1943388_1944201_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|down_7|NZ_CP007532.1_1944233_1944893_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|down_8|NZ_CP007532.1_1944904_1947811_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|down_9|NZ_CP007532.1_1947984_1950336_-	PRK05762, PRK05762, DNA polymerase II; Reviewed
