The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	2423932	2433272	4547600	transposase,integrase	Salmonella_phage(50.0%)	9	2419302:2419316	2434498:2434512
2419302:2419316	attL	GCTGGCGTATTTTAT	NA	NA	NA	NA
WP_001642934.1|2423932_2425096_-|integrase	site-specific integrase	integrase	B9UDL9	Salmonella_phage	96.9	7.4e-223
WP_157725488.1|2425311_2425866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023208134.1|2426150_2426591_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	30.7	4.8e-13
WP_023207758.1|2426706_2428038_-	hypothetical protein	NA	U5P0I5	Shigella_phage	41.0	1.7e-74
WP_001642935.1|2428034_2428955_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	92.4	4.4e-162
WP_000915523.1|2428951_2429314_-	GtrA family protein	NA	I1TED9	Salmonella_phage	100.0	3.9e-61
WP_109043757.1|2429736_2429946_-	copper-binding protein	NA	NA	NA	NA	NA
WP_000339627.1|2430876_2431731_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023212918.1|2431946_2433272_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.5	1.0e-103
2434498:2434512	attR	GCTGGCGTATTTTAT	NA	NA	NA	NA
>prophage 2
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	2830415	2880221	4547600	plate,tRNA,capsid,tail,holin	Salmonella_phage(85.71%)	65	NA	NA
WP_000117870.1|2830415_2831816_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000191405.1|2831984_2833187_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023262989.1|2833381_2834674_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.7e-252
WP_000065276.1|2834718_2834967_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237030.1|2835007_2835247_-	DUF4060 family protein	NA	H6WRW9	Salmonella_phage	98.7	9.7e-37
WP_077905217.1|2835289_2836447_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	1.8e-216
WP_001525214.1|2836409_2839325_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	89.4	0.0e+00
WP_023262988.1|2839447_2839798_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	77.6	5.6e-49
WP_000551860.1|2839819_2839990_-	DNA breaking-rejoining protein	NA	H6WRX3	Salmonella_phage	80.0	1.3e-14
WP_077914912.1|2839982_2840249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024150574.1|2840292_2840703_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370218.1|2840822_2841062_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	44.0	3.2e-11
WP_077914913.1|2841027_2841402_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	97.6	3.6e-62
WP_024150573.1|2841492_2842470_+	replication protein	NA	H6WRX7	Salmonella_phage	98.4	5.8e-160
WP_000800012.1|2842472_2843222_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
WP_023262985.1|2843232_2843436_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	100.0	4.0e-31
WP_077914926.1|2843445_2843580_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	95.5	1.4e-16
WP_000065482.1|2843576_2844110_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	67.9	3.8e-41
WP_000704096.1|2844136_2845129_-	peptidase M85	NA	NA	NA	NA	NA
WP_001217669.1|2845398_2845632_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000807548.1|2845743_2845965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929790.1|2846047_2846650_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_000178134.1|2846649_2846856_+	hypothetical protein	NA	H6WRY8	Salmonella_phage	98.5	2.3e-34
WP_023262984.1|2846858_2847470_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	96.1	1.8e-90
WP_000801753.1|2847466_2847604_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	81.6	4.9e-09
WP_001047624.1|2847603_2848413_+	antitermination protein	NA	M9NZB0	Enterobacteria_phage	69.5	1.2e-110
WP_023262982.1|2848715_2849213_-	hypothetical protein	NA	A0A077K9U2	Edwardsiella_phage	52.7	3.1e-37
WP_023221874.1|2849552_2849741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001294873.1|2849830_2850220_+|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
WP_000226307.1|2850206_2850488_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_023221873.1|2850487_2851102_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	82.4	2.0e-94
WP_023221872.1|2851098_2851641_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_023262981.1|2851743_2852247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023221870.1|2852307_2852937_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	99.0	7.8e-110
WP_023262979.1|2852939_2854562_+	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	99.1	0.0e+00
WP_023262978.1|2854561_2856031_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.6	1.2e-281
WP_139134618.1|2855915_2856653_+|capsid	minor capsid protein	capsid	A0A0M4REK0	Salmonella_phage	96.0	6.0e-109
WP_000873159.1|2856667_2857900_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.5	1.6e-228
WP_000128058.1|2857904_2858402_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	100.0	3.0e-88
WP_023221867.1|2858413_2859355_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	7.0e-179
WP_023221866.1|2859396_2859765_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	99.2	3.3e-60
WP_023262468.1|2859730_2860138_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	98.5	4.2e-72
WP_023262467.1|2860134_2860689_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	98.9	2.4e-94
WP_023221863.1|2860675_2861065_+	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	97.7	7.8e-68
WP_000538608.1|2861039_2861606_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	99.5	1.8e-105
WP_038393819.1|2861608_2862760_+	DUF3383 family protein	NA	A0A0M4RD26	Salmonella_phage	99.7	7.4e-215
WP_000501635.1|2862770_2863211_+	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	100.0	9.4e-78
WP_023262851.1|2863214_2863667_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	99.3	2.0e-78
WP_023262852.1|2863844_2865854_+	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	99.3	0.0e+00
WP_000353826.1|2865853_2866429_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
WP_000155111.1|2866428_2866731_+	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
WP_023262853.1|2866733_2867807_+	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	96.3	4.7e-187
WP_023137771.1|2867803_2868154_+	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	66.7	4.5e-22
WP_130525691.1|2868157_2868898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038393821.1|2868962_2869718_+	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	91.6	8.5e-127
WP_001526515.1|2869717_2870071_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	96.6	2.1e-59
WP_023262651.1|2870071_2871271_+|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.7	2.6e-215
WP_023262652.1|2871267_2871948_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.9	1.7e-126
WP_023262653.1|2871947_2873462_+	hypothetical protein	NA	S4TP62	Salmonella_phage	62.8	2.5e-117
WP_023187585.1|2873476_2873995_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	52.6	2.3e-46
WP_071786695.1|2874243_2874429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170914795.1|2874461_2874953_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.2	1.4e-66
WP_000776343.1|2875080_2876283_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	100.0	6.3e-209
WP_000497440.1|2876975_2877182_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_001643736.1|2877608_2880221_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.5	1.8e-19
>prophage 3
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	3064041	3071568	4547600	transposase	Escherichia_phage(42.86%)	9	NA	NA
WP_023208134.1|3064041_3064482_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	30.7	4.8e-13
WP_023262813.1|3064989_3066114_+	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_000275698.1|3067164_3067578_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	5.5e-19
WP_023262812.1|3067594_3068323_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.0	4.6e-61
WP_000158845.1|3068506_3069049_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|3069196_3069574_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|3069646_3070456_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_023208248.1|3070953_3071118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|3071328_3071568_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 4
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	3721861	3728478	4547600	integrase	Enterobacteria_phage(16.67%)	10	3723131:3723145	3734022:3734036
WP_023262868.1|3721861_3722353_-	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	55.6	3.5e-41
WP_000789530.1|3722660_3722828_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001529209.1|3723084_3723618_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
3723131:3723145	attL	CGTTCACACGTCATT	NA	NA	NA	NA
WP_001014089.1|3723614_3723902_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	95.1	1.9e-39
WP_001643549.1|3723932_3725039_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	Q9QF34	Lambdoid_phage	66.7	1.1e-55
WP_023262871.1|3725035_3726115_+|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.9	2.3e-101
WP_017441954.1|3726489_3726843_-	YebY family protein	NA	NA	NA	NA	NA
WP_000979695.1|3726859_3727735_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|3727735_3728110_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|3728247_3728478_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
3734022:3734036	attR	CGTTCACACGTCATT	NA	NA	NA	NA
>prophage 5
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	3831125	3838373	4547600		Morganella_phage(33.33%)	8	NA	NA
WP_001157315.1|3831125_3832556_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_023263105.1|3832629_3833325_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.7	2.1e-07
WP_023263104.1|3833404_3833716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080681.1|3834364_3835558_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	1.3e-110
WP_024131109.1|3835816_3836005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208508.1|3836015_3836228_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.6	1.1e-20
WP_038393879.1|3836682_3837951_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.9	7.1e-227
WP_000394197.1|3837953_3838373_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	3929133	3935439	4547600		Enterobacteria_phage(50.0%)	6	NA	NA
WP_001645077.1|3929133_3929673_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.5	2.9e-52
WP_001645078.1|3929677_3930556_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	3.0e-107
WP_001023664.1|3930603_3931503_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_023207414.1|3931502_3932588_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	6.1e-102
WP_000981469.1|3932964_3933858_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001645079.1|3934035_3935439_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
>prophage 7
NZ_CP007532	Salmonella enterica subsp. enterica serovar Abaetetuba str. ATCC 35640 chromosome, complete genome	4547600	4002664	4011835	4547600	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_023137006.1|4002664_4004698_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703136.1|4004938_4005397_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_023137005.1|4005568_4006099_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|4006155_4006623_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|4006669_4007389_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|4007385_4009071_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_023262933.1|4009293_4010025_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	88.4	2.0e-101
WP_001261696.1|4010084_4010192_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|4010172_4010904_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023262932.1|4010887_4011835_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
