assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000487035.2_ASM48703v2	NZ_CP019198	Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome	1	86922-87016	1	CRISPRCasFinder	no	RT	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|31aa|up_5|NZ_CP019198.1_82064_82157_+,NA|160aa|up_4|NZ_CP019198.1_82357_82837_+,NA|38aa|up_2|NZ_CP019198.1_84299_84413_+,NA|155aa|up_0|NZ_CP019198.1_85333_85798_+,NA|48aa|down_6|NZ_CP019198.1_97229_97373_+,NA|270aa|down_7|NZ_CP019198.1_97597_98407_+	NA|310aa|up_9|NZ_CP019198.1_76021_76951_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP019198.1_76993_77896_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP019198.1_78401_79097_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP019198.1_79316_82043_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP019198.1_82064_82157_+	NA	NA|160aa|up_4|NZ_CP019198.1_82357_82837_+	NA	NA|227aa|up_3|NZ_CP019198.1_82999_83680_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP019198.1_84299_84413_+	NA	NA|286aa|up_1|NZ_CP019198.1_84465_85323_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP019198.1_85333_85798_+	NA	NA|206aa|down_0|NZ_CP019198.1_88818_89436_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	RT|536aa|down_1|NZ_CP019198.1_91200_92808_-	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|778aa|down_2|NZ_CP019198.1_93420_95754_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|107aa|down_3|NZ_CP019198.1_95768_96089_-	pfam17345, DUF5375, Family of unknown function (DUF5375)	NA|184aa|down_4|NZ_CP019198.1_96309_96861_-	pfam10554, Phage_ASH, Ash protein family	NA|73aa|down_5|NZ_CP019198.1_96857_97076_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|48aa|down_6|NZ_CP019198.1_97229_97373_+	NA	NA|270aa|down_7|NZ_CP019198.1_97597_98407_+	NA	NA|80aa|down_8|NZ_CP019198.1_98410_98650_+	PRK09678, PRK09678, DNA-binding transcriptional regulator; Provisional	NA|189aa|down_9|NZ_CP019198.1_98665_99232_+	pfam07455, Psu, Phage polarity suppression protein (Psu)
GCF_000487035.2_ASM48703v2	NZ_CP019198	Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome	2	199789-199867	2	CRISPRCasFinder	no		RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTGATATTAGCCTGGTGGTAATG	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|70aa|up_8|NZ_CP019198.1_188355_188565_+,NA	NA|121aa|up_9|NZ_CP019198.1_187702_188065_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|70aa|up_8|NZ_CP019198.1_188355_188565_+	NA	NA|197aa|up_7|NZ_CP019198.1_188574_189165_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|up_6|NZ_CP019198.1_189161_190310_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|639aa|up_5|NZ_CP019198.1_190530_192447_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|203aa|up_4|NZ_CP019198.1_192922_193531_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_3|NZ_CP019198.1_193629_195021_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_2|NZ_CP019198.1_195017_196868_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|294aa|up_1|NZ_CP019198.1_197152_198034_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|513aa|up_0|NZ_CP019198.1_198202_199741_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|652aa|down_0|NZ_CP019198.1_199970_201926_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_1|NZ_CP019198.1_202189_203005_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|232aa|down_2|NZ_CP019198.1_203153_203849_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_3|NZ_CP019198.1_203842_204703_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|217aa|down_4|NZ_CP019198.1_204707_205358_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|499aa|down_5|NZ_CP019198.1_205354_206851_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_6|NZ_CP019198.1_206854_207841_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|426aa|down_7|NZ_CP019198.1_207852_209130_-	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|158aa|down_8|NZ_CP019198.1_209132_209606_-	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|311aa|down_9|NZ_CP019198.1_209744_210677_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)
GCF_000487035.2_ASM48703v2	NZ_CP019198	Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome	3	1017852-1019527	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	1018856-1018888|1018857-1018888	NZ_CP019198.1_3243872-3243904|NZ_CP019198.1_3243873-3243904	I-E:I-E:I-E	26,27,27	27	TypeI-E	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|381aa|up_9|NZ_CP019198.1_1003648_1004791_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP019198.1_1004834_1007591_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP019198.1_1007648_1008944_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP019198.1_1008995_1011230_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP019198.1_1011314_1011671_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP019198.1_1011636_1011933_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP019198.1_1012701_1013502_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP019198.1_1013729_1015367_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP019198.1_1015449_1016748_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP019198.1_1016883_1017555_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|419aa|down_0|NZ_CP019198.1_1019672_1020928_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|266aa|down_1|NZ_CP019198.1_1020939_1021737_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_2|NZ_CP019198.1_1021826_1022189_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_3|NZ_CP019198.1_1022624_1024424_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|NZ_CP019198.1_1024423_1026136_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|NZ_CP019198.1_1026211_1026946_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|NZ_CP019198.1_1027033_1027987_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_7|NZ_CP019198.1_1028370_1031070_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_8|NZ_CP019198.1_1031426_1032962_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_9|NZ_CP019198.1_1032978_1033581_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2
GCF_000487035.2_ASM48703v2	NZ_CP019198	Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome	4	1037399-1041151	4,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	61,61	61	TypeI-E	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP019198.1_1026211_1026946_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP019198.1_1027033_1027987_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP019198.1_1028370_1031070_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP019198.1_1031426_1032962_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP019198.1_1032978_1033581_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP019198.1_1033603_1034662_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP019198.1_1034671_1035397_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP019198.1_1035396_1036101_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP019198.1_1036100_1037018_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP019198.1_1037020_1037314_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP019198.1_1041162_1042209_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019198.1_1042459_1043368_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP019198.1_1043377_1044817_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019198.1_1044803_1045409_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP019198.1_1045426_1045783_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019198.1_1045973_1046285_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019198.1_1046303_1047014_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019198.1_1047013_1047493_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019198.1_1047489_1048539_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019198.1_1048519_1049281_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000487035.2_ASM48703v2	NZ_CP019198	Salmonella enterica subsp. enterica serovar Muenster str. 0315 chromosome, complete genome	5	3960238-3960316	5	CRISPRCasFinder	no		RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GGTTTATGCCTGATGGCGCTACGCTT	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|139aa|down_5|NZ_CP019198.1_3967303_3967720_-	NA|784aa|up_9|NZ_CP019198.1_3946231_3948583_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_8|NZ_CP019198.1_3948756_3951663_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_7|NZ_CP019198.1_3951674_3952334_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|271aa|up_6|NZ_CP019198.1_3952428_3953241_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|up_5|NZ_CP019198.1_3953494_3955849_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|up_4|NZ_CP019198.1_3955902_3957189_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|up_3|NZ_CP019198.1_3957188_3958178_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|up_2|NZ_CP019198.1_3958174_3958996_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|up_1|NZ_CP019198.1_3958998_3959376_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|up_0|NZ_CP019198.1_3959386_3960235_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_0|NZ_CP019198.1_3960385_3960865_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|down_1|NZ_CP019198.1_3961063_3962926_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|down_2|NZ_CP019198.1_3962918_3963449_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|630aa|down_3|NZ_CP019198.1_3964001_3965891_-	COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]	NA|97aa|down_4|NZ_CP019198.1_3966789_3967080_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|139aa|down_5|NZ_CP019198.1_3967303_3967720_-	NA	NA|77aa|down_6|NZ_CP019198.1_3968019_3968250_-	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|447aa|down_7|NZ_CP019198.1_3968338_3969679_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|down_8|NZ_CP019198.1_3969826_3970114_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|down_9|NZ_CP019198.1_3970110_3971397_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional
