assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000486445.2_ASM48644v2	NZ_CP012349	Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791 chromosome, complete genome	1	931258-932141	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	931470-931501	NZ_CP012349.1_3367672-3367641	I-E:I-E:I-E	13,14,14	14	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|179aa|up_9|NZ_CP012349.1_919804_920341_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP012349.1_920337_920808_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP012349.1_920822_921329_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP012349.1_921348_922122_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP012349.1_922134_924834_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP012349.1_924913_925501_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP012349.1_926107_926908_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP012349.1_927135_928773_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP012349.1_928855_930154_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP012349.1_930289_930961_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP012349.1_932238_933036_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP012349.1_933125_933488_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP012349.1_933911_935711_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP012349.1_935710_937423_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP012349.1_937498_938233_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP012349.1_938320_939274_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP012349.1_939717_942381_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP012349.1_942392_943949_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|down_8|NZ_CP012349.1_943945_944482_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP012349.1_944495_945554_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_000486445.2_ASM48644v2	NZ_CP012349	Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791 chromosome, complete genome	2	948250-949560	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,21	21	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP012349.1_937498_938233_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP012349.1_938320_939274_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP012349.1_939717_942381_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP012349.1_942392_943949_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP012349.1_943945_944482_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP012349.1_944495_945554_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP012349.1_945564_946311_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP012349.1_946292_946943_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP012349.1_946939_947860_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP012349.1_947859_948153_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP012349.1_949574_950621_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP012349.1_950871_951780_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP012349.1_951789_953229_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP012349.1_953215_953821_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP012349.1_953838_954195_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP012349.1_954385_954697_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP012349.1_954715_955426_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP012349.1_955425_955905_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP012349.1_955901_956951_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP012349.1_956931_957693_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000486445.2_ASM48644v2	NZ_CP012349	Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791 chromosome, complete genome	3	4104030-4104112	3	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	AAAGGGTGATGCCAATGGCATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|125aa|up_6|NZ_CP012349.1_4096761_4097136_+,NA|378aa|up_2|NZ_CP012349.1_4100506_4101640_+,NA|178aa|up_1|NZ_CP012349.1_4102119_4102653_+,NA|203aa|down_8|NZ_CP012349.1_4112532_4113141_+	NA|80aa|up_9|NZ_CP012349.1_4093608_4093848_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|83aa|up_8|NZ_CP012349.1_4093960_4094209_-	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|295aa|up_7|NZ_CP012349.1_4095880_4096765_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|125aa|up_6|NZ_CP012349.1_4096761_4097136_+	NA	NA|452aa|up_5|NZ_CP012349.1_4097128_4098484_+	TIGR00665, DnaB, replicative DNA helicase	NA|495aa|up_4|NZ_CP012349.1_4098480_4099965_+	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|180aa|up_3|NZ_CP012349.1_4099948_4100488_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|378aa|up_2|NZ_CP012349.1_4100506_4101640_+	NA	NA|178aa|up_1|NZ_CP012349.1_4102119_4102653_+	NA	NA|307aa|up_0|NZ_CP012349.1_4102645_4103566_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|771aa|down_0|NZ_CP012349.1_4104220_4106533_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|143aa|down_1|NZ_CP012349.1_4106914_4107343_+	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|433aa|down_2|NZ_CP012349.1_4107719_4109018_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|233aa|down_3|NZ_CP012349.1_4109250_4109949_+	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|165aa|down_4|NZ_CP012349.1_4109938_4110433_+	pfam11358, DUF3158, Protein of unknown function (DUF3158)	NA|139aa|down_5|NZ_CP012349.1_4110998_4111415_+	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|98aa|down_6|NZ_CP012349.1_4111547_4111841_+	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|down_7|NZ_CP012349.1_4112075_4112540_+	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|203aa|down_8|NZ_CP012349.1_4112532_4113141_+	NA	NA|217aa|down_9|NZ_CP012349.1_4113147_4113798_+	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family
