assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	1	430037-430137	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|70aa|up_9|NC_022604.1_421609_421819_-,NA|128aa|up_7|NC_022604.1_422643_423027_-,NA|98aa|up_5|NC_022604.1_423980_424274_-,NA|34aa|up_0|NC_022604.1_429261_429363_+,NA|221aa|down_1|NC_022604.1_431227_431890_-	NA|70aa|up_9|NC_022604.1_421609_421819_-	NA	NA|194aa|up_8|NC_022604.1_421996_422578_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_022604.1_422643_423027_-	NA	NA|209aa|up_6|NC_022604.1_423281_423908_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NC_022604.1_423980_424274_-	NA	NA|508aa|up_4|NC_022604.1_424352_425876_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_022604.1_425891_426461_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_022604.1_426952_427708_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_022604.1_427788_429177_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NC_022604.1_429261_429363_+	NA	NA|319aa|down_0|NC_022604.1_430153_431110_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NC_022604.1_431227_431890_-	NA	NA|136aa|down_2|NC_022604.1_432032_432440_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_022604.1_432952_433531_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_022604.1_433530_434799_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_022604.1_434836_436303_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_022604.1_436327_437869_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NC_022604.1_437936_439130_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NC_022604.1_439156_439357_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NC_022604.1_439854_440085_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	2	698290-698382	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NC_022604.1_694773_694881_+,NA|169aa|down_4|NC_022604.1_702129_702636_+,NA|239aa|down_5|NC_022604.1_702797_703514_+	NA|313aa|up_9|NC_022604.1_688975_689914_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NC_022604.1_690124_690661_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NC_022604.1_690829_691306_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NC_022604.1_691345_692641_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NC_022604.1_692668_693190_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NC_022604.1_693688_694699_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NC_022604.1_694773_694881_+	NA	NA|128aa|up_2|NC_022604.1_695006_695390_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_022604.1_695386_697048_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_022604.1_697436_698072_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NC_022604.1_698510_699338_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_022604.1_699485_700436_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_022604.1_700490_701210_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_022604.1_701193_701994_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_022604.1_702129_702636_+	NA	NA|239aa|down_5|NC_022604.1_702797_703514_+	NA	NA|263aa|down_6|NC_022604.1_703682_704471_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NC_022604.1_704721_705096_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NC_022604.1_706043_706973_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NC_022604.1_707167_707392_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	3	814035-814117	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|NC_022604.1_800635_800842_+,NA|34aa|down_1|NC_022604.1_815573_815675_+,NA|52aa|down_8|NC_022604.1_823854_824010_+	NA|69aa|up_9|NC_022604.1_800635_800842_+	NA	NA|237aa|up_8|NC_022604.1_800929_801640_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_022604.1_801623_802628_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_022604.1_803101_805042_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_022604.1_805312_807196_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_022604.1_807207_808989_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_022604.1_809210_810188_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_022604.1_810180_811695_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_022604.1_811934_812993_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_022604.1_813343_813886_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_022604.1_814565_815483_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_022604.1_815573_815675_+	NA	NA|502aa|down_2|NC_022604.1_815752_817258_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_022604.1_817598_818099_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_022604.1_818118_818985_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_022604.1_819785_820184_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_022604.1_820146_822252_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_022604.1_822369_823341_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_022604.1_823854_824010_+	NA	NA|324aa|down_9|NC_022604.1_824048_825020_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	4	855087-855167	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	855113-855141|855113-855141|855113-855141|855113-855141|855113-855141|855113-855141|855113-855141|855113-855141|855113-855141	NC_022604.1_391587-391559|NC_022604.1_1897788-1897760|NC_022604.1_317291-317263|NC_022604.1_905021-905049|NC_022604.1_987928-987956|NC_022604.1_1230862-1230834|NC_022604.1_1709852-1709880|NC_022604.1_2063611-2063639|NC_022604.1_2678034-2678006	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|NC_022604.1_846000_846105_+,NA|36aa|up_5|NC_022604.1_847537_847645_+,NA	NA|191aa|up_9|NC_022604.1_842441_843014_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_022604.1_843427_845959_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_022604.1_846000_846105_+	NA	NA|370aa|up_6|NC_022604.1_846273_847384_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_022604.1_847537_847645_+	NA	NA|280aa|up_4|NC_022604.1_847792_848632_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_022604.1_848805_849456_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_022604.1_849452_849689_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_022604.1_849957_851943_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_022604.1_851950_854797_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_022604.1_855403_856336_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_022604.1_856341_857181_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_022604.1_857188_857674_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_022604.1_857681_859121_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_022604.1_859187_860123_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_022604.1_860946_861858_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_022604.1_861854_862850_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_022604.1_862959_863904_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_022604.1_864476_865064_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_022604.1_865306_866209_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	5	904955-905036	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	904979-905012|904979-905012	NC_022604.1_1441746-1441713|NC_022604.1_1530747-1530780	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_0|NC_022604.1_903857_903971_+,NA	NA|187aa|up_9|NC_022604.1_898079_898640_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_022604.1_898712_899330_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_022604.1_899484_899979_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_022604.1_900377_900800_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_022604.1_900947_901664_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_022604.1_901746_902286_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_022604.1_902435_902756_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_022604.1_902899_903256_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_022604.1_903413_903794_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_0|NC_022604.1_903857_903971_+	NA	NA|129aa|down_0|NC_022604.1_905592_905979_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_022604.1_905971_906268_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_022604.1_906517_907543_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_022604.1_907535_908231_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_022604.1_908248_909070_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NC_022604.1_909213_910434_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NC_022604.1_910521_911250_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NC_022604.1_911273_912002_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|NC_022604.1_912176_912911_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|NC_022604.1_913060_913273_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	6	1103263-1103350	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|40aa|up_0|NC_022604.1_1103139_1103259_+,NA|45aa|down_0|NC_022604.1_1103359_1103494_-,NA|432aa|down_1|NC_022604.1_1103645_1104941_+	NA|730aa|up_9|NC_022604.1_1091717_1093907_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NC_022604.1_1093885_1095370_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NC_022604.1_1095362_1096391_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NC_022604.1_1096393_1096960_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NC_022604.1_1096974_1098453_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NC_022604.1_1098474_1099722_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NC_022604.1_1099986_1100793_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NC_022604.1_1100785_1102186_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NC_022604.1_1102200_1102776_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NC_022604.1_1103139_1103259_+	NA	NA|45aa|down_0|NC_022604.1_1103359_1103494_-	NA	NA|432aa|down_1|NC_022604.1_1103645_1104941_+	NA	NA|391aa|down_2|NC_022604.1_1105365_1106538_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_022604.1_1106591_1107134_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_022604.1_1107287_1107554_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_022604.1_1107556_1109275_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_022604.1_1109511_1109745_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_022604.1_1109942_1111304_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_022604.1_1111300_1112320_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_022604.1_1112452_1113115_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	7	1225391-1225692	1,1	CRT,PILER-CR	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGCAAGTTGGNGNGGNNCCNA,TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAGGA	21,52	4	7	1225412-1225446|1225525-1225559|1225637-1225671|1225637-1225671|1225637-1225671|1225637-1225671|1225540-1225559	NC_022604.1_1225356-1225390|NC_022604.1_1225356-1225390|NC_022604.1_2169855-2169821|NC_022604.1_814017-814051|NC_022604.1_860585-860551|NC_022604.1_2792693-2792659|NC_022604.1_1225371-1225390	NA:NA	5,2	5	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|56aa|up_6|NC_022604.1_1221129_1221297_+,NA|31aa|up_4|NC_022604.1_1222136_1222229_-,NA|169aa|up_2|NC_022604.1_1223260_1223767_+,NA|62aa|down_0|NC_022604.1_1225847_1226033_-,NA|78aa|down_1|NC_022604.1_1226654_1226888_-,NA|49aa|down_4|NC_022604.1_1230328_1230475_+,NA|75aa|down_5|NC_022604.1_1230431_1230656_+	NA|267aa|up_9|NC_022604.1_1219106_1219907_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|NC_022604.1_1219918_1220506_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|NC_022604.1_1220498_1221002_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|NC_022604.1_1221129_1221297_+	NA	NA|110aa|up_5|NC_022604.1_1221490_1221820_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_4|NC_022604.1_1222136_1222229_-	NA	NA|134aa|up_3|NC_022604.1_1222188_1222590_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NC_022604.1_1223260_1223767_+	NA	NA|166aa|up_1|NC_022604.1_1224025_1224523_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NC_022604.1_1224676_1225027_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NC_022604.1_1225847_1226033_-	NA	NA|78aa|down_1|NC_022604.1_1226654_1226888_-	NA	NA|320aa|down_2|NC_022604.1_1227364_1228324_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|down_3|NC_022604.1_1228588_1229761_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|down_4|NC_022604.1_1230328_1230475_+	NA	NA|75aa|down_5|NC_022604.1_1230431_1230656_+	NA	NA|239aa|down_6|NC_022604.1_1231156_1231873_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NC_022604.1_1231980_1232706_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NC_022604.1_1232800_1233526_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NC_022604.1_1233963_1234965_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	8	1230896-1230981	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	6	1230926-1230951|1230926-1230951|1230926-1230951|1230926-1230951|1230926-1230951|1230926-1230951	NC_022604.1_317131-317156|NC_022604.1_823563-823588|NC_022604.1_860540-860515|NC_022604.1_823507-823532|NC_022604.1_823619-823644|NC_022604.1_968402-968427	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|NC_022604.1_1223260_1223767_+,NA|62aa|up_5|NC_022604.1_1225847_1226033_-,NA|78aa|up_4|NC_022604.1_1226654_1226888_-,NA|49aa|up_1|NC_022604.1_1230328_1230475_+,NA|75aa|up_0|NC_022604.1_1230431_1230656_+,NA|76aa|down_6|NC_022604.1_1237955_1238183_+	NA|134aa|up_9|NC_022604.1_1222188_1222590_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NC_022604.1_1223260_1223767_+	NA	NA|166aa|up_7|NC_022604.1_1224025_1224523_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NC_022604.1_1224676_1225027_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NC_022604.1_1225847_1226033_-	NA	NA|78aa|up_4|NC_022604.1_1226654_1226888_-	NA	NA|320aa|up_3|NC_022604.1_1227364_1228324_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|up_2|NC_022604.1_1228588_1229761_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|up_1|NC_022604.1_1230328_1230475_+	NA	NA|75aa|up_0|NC_022604.1_1230431_1230656_+	NA	NA|239aa|down_0|NC_022604.1_1231156_1231873_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NC_022604.1_1231980_1232706_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NC_022604.1_1232800_1233526_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NC_022604.1_1233963_1234965_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NC_022604.1_1234987_1235920_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|497aa|down_5|NC_022604.1_1236157_1237648_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NC_022604.1_1237955_1238183_+	NA	NA|316aa|down_7|NC_022604.1_1238487_1239435_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NC_022604.1_1239683_1239872_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NC_022604.1_1240783_1240918_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	9	2360908-2361058	8	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NC_022604.1_2355779_2356010_-,NA|364aa|up_0|NC_022604.1_2359798_2360890_+,NA|35aa|down_0|NC_022604.1_2361389_2361494_-,NA|31aa|down_2|NC_022604.1_2363605_2363698_+	NA|237aa|up_9|NC_022604.1_2351389_2352100_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_022604.1_2352220_2352664_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_022604.1_2352863_2353277_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_022604.1_2353734_2355108_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_022604.1_2355779_2356010_-	NA	NA|313aa|up_4|NC_022604.1_2356040_2356979_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_022604.1_2357413_2358079_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_022604.1_2358230_2358551_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_022604.1_2358552_2359533_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_022604.1_2359798_2360890_+	NA	NA|35aa|down_0|NC_022604.1_2361389_2361494_-	NA	NA|379aa|down_1|NC_022604.1_2362180_2363317_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NC_022604.1_2363605_2363698_+	NA	NA|286aa|down_3|NC_022604.1_2364403_2365261_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_022604.1_2365328_2366111_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NC_022604.1_2366342_2368148_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NC_022604.1_2368828_2370367_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NC_022604.1_2370401_2372534_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NC_022604.1_2372545_2372980_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NC_022604.1_2372979_2374086_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000485885.1_ASM48588v1	NC_022604	Staphylococcus aureus subsp. aureus Z172, complete sequence	10	2485072-2485265	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	15	2485095-2485127|2485095-2485127|2485095-2485127|2485095-2485127|2485095-2485127|2485151-2485186|2485151-2485186|2485151-2485186|2485151-2485186|2485151-2485186|2485210-2485242|2485210-2485242|2485210-2485242|2485210-2485242|2485210-2485242	NC_022604.1_1230915-1230883|NC_022604.1_1441700-1441668|NC_022604.1_1530793-1530825|NC_022604.1_2052867-2052899|NC_022604.1_2758391-2758423|NC_022604.1_1230862-1230827|NC_022604.1_1897788-1897753|NC_022604.1_317291-317256|NC_022604.1_1709852-1709887|NC_022604.1_2063611-2063646|NC_022604.1_860495-860527|NC_022604.1_1230915-1230883|NC_022604.1_1441700-1441668|NC_022604.1_2052867-2052899|NC_022604.1_2758391-2758423	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NC_022604.1_2475599_2475764_+,NA|106aa|up_8|NC_022604.1_2476008_2476326_+,NA|84aa|up_5|NC_022604.1_2481450_2481702_+,NA|57aa|up_0|NC_022604.1_2484841_2485012_+,NA	NA|55aa|up_9|NC_022604.1_2475599_2475764_+	NA	NA|106aa|up_8|NC_022604.1_2476008_2476326_+	NA	NA|1056aa|up_7|NC_022604.1_2476512_2479680_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_022604.1_2479796_2481062_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_022604.1_2481450_2481702_+	NA	NA|255aa|up_4|NC_022604.1_2481693_2482458_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_022604.1_2482619_2483060_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_022604.1_2483052_2484264_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_022604.1_2484365_2484716_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_022604.1_2484841_2485012_+	NA	NA|341aa|down_0|NC_022604.1_2485406_2486429_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_022604.1_2486448_2487048_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_022604.1_2487054_2487288_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_022604.1_2487293_2487740_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_022604.1_2487753_2488239_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_022604.1_2488235_2489495_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_022604.1_2489557_2490052_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_022604.1_2490053_2490560_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_022604.1_2490590_2491595_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_022604.1_2491764_2492370_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
