assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000471985.1_ASM47198v1	NC_022516	Streptococcus suis YB51, complete sequence	1	74577-74651	1	CRISPRCasFinder	no		cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	AAAACAAGAAAGTGAATTAAGGTCC	25	1	1	74602-74626	NC_022516.1_73079-73103	NA	1	1	Orphan	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	NA,NA|89aa|down_0|NC_022516.1_75401_75668_+	NA|646aa|up_9|NC_022516.1_65508_67446_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|197aa|up_8|NC_022516.1_67484_68075_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|190aa|up_7|NC_022516.1_68328_68898_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|394aa|up_6|NC_022516.1_68934_70116_+	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|384aa|up_5|NC_022516.1_70167_71319_+	PRK09354, recA, recombinase A; Provisional	NA|133aa|up_4|NC_022516.1_71554_71953_+	PRK13344, spxA, transcriptional regulator Spx; Reviewed	NA|89aa|up_3|NC_022516.1_72052_72319_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|140aa|up_2|NC_022516.1_72318_72738_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|107aa|up_1|NC_022516.1_72749_73070_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|419aa|up_0|NC_022516.1_73195_74452_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|89aa|down_0|NC_022516.1_75401_75668_+	NA	NA|103aa|down_1|NC_022516.1_75989_76298_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|209aa|down_2|NC_022516.1_76510_77137_+	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|208aa|down_3|NC_022516.1_77161_77785_+	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|100aa|down_4|NC_022516.1_77784_78084_+	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|278aa|down_5|NC_022516.1_78101_78935_+	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|94aa|down_6|NC_022516.1_79036_79318_+	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed	NA|115aa|down_7|NC_022516.1_79335_79680_+	PRK00565, rplV, 50S ribosomal protein L22; Reviewed	NA|218aa|down_8|NC_022516.1_79692_80346_+	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|138aa|down_9|NC_022516.1_80349_80763_+	PRK09203, rplP, 50S ribosomal protein L16; Reviewed
GCF_000471985.1_ASM47198v1	NC_022516	Streptococcus suis YB51, complete sequence	2	1104712-1104795	2	CRISPRCasFinder	no		cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	GGAGGTTGGAAATTGAGCGAACGAAGTT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	NA|252aa|up_6|NC_022516.1_1097019_1097775_+,NA|181aa|up_4|NC_022516.1_1099400_1099943_-,NA|157aa|up_3|NC_022516.1_1099962_1100433_-,NA	NA|172aa|up_9|NC_022516.1_1094803_1095319_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|141aa|up_8|NC_022516.1_1095345_1095768_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|256aa|up_7|NC_022516.1_1095973_1096741_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|252aa|up_6|NC_022516.1_1097019_1097775_+	NA	NA|344aa|up_5|NC_022516.1_1098143_1099175_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|181aa|up_4|NC_022516.1_1099400_1099943_-	NA	NA|157aa|up_3|NC_022516.1_1099962_1100433_-	NA	NA|267aa|up_2|NC_022516.1_1100564_1101365_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|419aa|up_1|NC_022516.1_1101637_1102894_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|387aa|up_0|NC_022516.1_1103450_1104611_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|131aa|down_0|NC_022516.1_1104845_1105238_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|581aa|down_1|NC_022516.1_1105221_1106964_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|down_2|NC_022516.1_1106950_1108687_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|325aa|down_3|NC_022516.1_1108688_1109663_-	PRK09653, eutD, phosphotransacetylase	NA|298aa|down_4|NC_022516.1_1109680_1110574_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|276aa|down_5|NC_022516.1_1110573_1111401_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|224aa|down_6|NC_022516.1_1111375_1112047_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|189aa|down_7|NC_022516.1_1112133_1112700_+	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily	NA|326aa|down_8|NC_022516.1_1112844_1113822_+	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|372aa|down_9|NC_022516.1_1113832_1114948_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_000471985.1_ASM47198v1	NC_022516	Streptococcus suis YB51, complete sequence	3	1324796-1325489	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	Type II-A,Type II-C,Type II-B	GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC	36,36,36	1	1	1325359-1325387	NC_022516.1_1036859-1036887	NA:NA:NA	10,10,7	10	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	NA,NA|359aa|down_5|NC_022516.1_1333530_1334607_+,NA|103aa|down_6|NC_022516.1_1334728_1335037_-	NA|206aa|up_9|NC_022516.1_1314603_1315221_-	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|247aa|up_8|NC_022516.1_1315207_1315948_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|376aa|up_7|NC_022516.1_1316178_1317306_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|193aa|up_6|NC_022516.1_1317400_1317979_+	pfam04892, VanZ, VanZ like family	NA|756aa|up_5|NC_022516.1_1318113_1320381_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|238aa|up_4|NC_022516.1_1320556_1321270_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|270aa|up_3|NC_022516.1_1321302_1322112_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|119aa|up_2|NC_022516.1_1322123_1322480_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|404aa|up_1|NC_022516.1_1322479_1323691_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|225aa|up_0|NC_022516.1_1324019_1324694_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	csn2|349aa|down_0|NC_022516.1_1325549_1326596_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|108aa|down_1|NC_022516.1_1326592_1326916_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_2|NC_022516.1_1326912_1327827_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1123aa|down_3|NC_022516.1_1327993_1331362_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|458aa|down_4|NC_022516.1_1332045_1333419_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|359aa|down_5|NC_022516.1_1333530_1334607_+	NA	NA|103aa|down_6|NC_022516.1_1334728_1335037_-	NA	NA|488aa|down_7|NC_022516.1_1335125_1336589_-	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|194aa|down_8|NC_022516.1_1336600_1337182_-	pfam04011, LemA, LemA family	NA|261aa|down_9|NC_022516.1_1337254_1338037_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
