bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	1.1|769611|30|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	93.33	30	2	0	1	30	810681	810652	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	2e-06	42.8	1.0	CAGAGAAATTGGAACGCCAATTTCTACAGG	810652-810681	CCTGTAGAAATTGGTGTTCCAATTTCTTTG	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	94.74	19	1	0	1	19	815997	816015	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.029	28.5	1.0	CTGTGTTGGGGCCCACTCC	815997-816015	CTGTGTTGGGGCCCACACC	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	94.74	19	1	0	1	19	825166	825184	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.029	28.5	1.0	CTGTGTTGGGGCCCACTCC	825166-825184	CTGTGTTGGGGCCCACCCC	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	94.74	19	1	0	1	19	1286816	1286834	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.029	28.5	1.0	CTGTGTTGGGGCCCACTCC	1286816-1286834	CTGTGTTGGGGCCCACACC	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	94.74	19	1	0	1	19	1286874	1286892	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.029	28.5	1.0	CTGTGTTGGGGCCCACTCC	1286874-1286892	CTGTGTTGGGGCCCACACC	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	94.74	19	1	0	1	19	1980244	1980262	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.029	28.5	1.0	CTGTGTTGGGGCCCACTCC	1980244-1980262	CTGTGTTGGGGCCCACACC	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	94.74	19	1	0	1	19	2320467	2320449	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.029	28.5	1.0	CTGTGTTGGGGCCCACTCC	2320449-2320467	GGTGTGGGCCCCAACACAG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	89.47	19	2	0	1	19	183803	183821	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.26	25.4	1.0	CTGTGTTGGGGCCCACTCC	183803-183821	CTGTGTTGGGGCCCCCACC	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	89.47	19	2	0	1	19	616604	616586	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.26	25.4	1.0	CTGTGTTGGGGCCCACTCC	616586-616604	GGTGTGGGCCCCAACATAG	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	89.47	19	2	0	1	19	926524	926506	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.26	25.4	1.0	CTGTGTTGGGGCCCACTCC	926506-926524	GGGGCGGGCCCCAACACAG	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	89.47	19	2	0	1	19	1145459	1145441	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.26	25.4	1.0	CTGTGTTGGGGCCCACTCC	1145441-1145459	GGGGTGGGCCCCAACATAG	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	89.47	19	2	0	1	19	1361452	1361470	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.26	25.4	1.0	CTGTGTTGGGGCCCACTCC	1361452-1361470	CTGTGTTGGAGCCCACCCC	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2.2|946797|19|NC_022442|PILER-CR	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	89.47	19	2	0	1	19	1700238	1700256	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	0.26	25.4	1.0	CTGTGTTGGGGCCCACTCC	1700238-1700256	CTGTGTTGGGGCCCCATCC	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	8.1|2286175|25|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.00	25	1	0	1	25	1149602	1149578	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	4e-05	38.0	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	1149578-1149602	CGGGGCCCCAACACAGAAGCTGGCA	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	8.1|2286175|25|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.00	25	1	0	1	25	1874495	1874519	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	4e-05	38.0	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	1874495-1874519	TGTCAGCTTCTATGTTGGGGCCCCG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	8.1|2286175|25|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.00	25	1	0	1	25	2286231	2286255	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	4e-05	38.0	1.0	TGTCAGCTTCTGTGTTGGGGCCCCG	2286231-2286255	TGTCAGCTTCTATGTTGGGGCCCCG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	100.00	26	0	0	1	26	616670	616645	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-06	42.8	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	616645-616670	CGGGGCCCCAACATAGAAGCTGGCGG	0
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	100.00	26	0	0	1	26	1149547	1149522	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-06	42.8	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	1149522-1149547	CGGGGCCCCAACATAGAAGCTGGCGG	0
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	100.00	26	0	0	1	26	1149717	1149692	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-06	42.8	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	1149692-1149717	CGGGGCCCCAACATAGAAGCTGGCGG	0
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	100.00	26	0	0	1	26	1286749	1286774	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-06	42.8	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	1286749-1286774	CCGCCAGCTTCTATGTTGGGGCCCCG	0
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	779068	779043	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	779043-779068	CGGGGCCCCAACACAGAAGCTGGCGG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	779124	779099	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	779099-779124	CGGGGCCCCAACACAGAAGCTGGCGG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	825042	825067	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	825042-825067	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	1845674	1845649	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	1845649-1845674	CGGGGCCCCAACATAGTAGCTGGCGG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	2028516	2028541	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2028516-2028541	CCGACAGCTTCTATGTTGGGGCCCCG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	2203769	2203794	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2203769-2203794	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	96.15	26	1	0	1	26	2320532	2320507	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2320507-2320532	CGGGGCCCCAACACAGAAGCTGGCGG	1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	92.31	26	2	0	1	26	2124456	2124431	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-04	36.5	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2124431-2124456	CGGGGCCCCAAGACAGAAGCTGGCGG	2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10.1|2783290|26|NC_022442|CRISPRCasFinder	NC_022442.1	Staphylococcus aureus subsp. aureus SA957, complete sequence	92.31	26	2	0	1	26	2124794	2124769	769583-769668|946690-946847|1065218-1065310|1224107-1224199|1432165-1432244|1978791-1978872|2038562-2038647|2286145-2286229|2440711-2440803|2783260-2783345	1e-04	36.5	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	2124769-2124794	CGGGGCCCCAACACAAAAGCTGGCGG	2
