assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	1	769583-769668	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	769611-769640	NC_022442.1_810681-810652	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NC_022442.1_756426_756633_+,NA|34aa|down_1|NC_022442.1_771111_771213_+,NA|52aa|down_8|NC_022442.1_779376_779532_+	NA|69aa|up_9|NC_022442.1_756426_756633_+	NA	NA|237aa|up_8|NC_022442.1_756729_757440_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_022442.1_757423_758428_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_022442.1_758901_760842_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_022442.1_761112_762996_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_022442.1_763007_764789_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_022442.1_765010_765988_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_022442.1_765980_767495_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_022442.1_767734_768793_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_022442.1_768951_769494_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_022442.1_770101_771019_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_022442.1_771111_771213_+	NA	NA|502aa|down_2|NC_022442.1_771290_772796_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_022442.1_773135_773636_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_022442.1_773655_774522_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_022442.1_775321_775720_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_022442.1_775682_777788_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_022442.1_777905_778877_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_022442.1_779376_779532_+	NA	NA|324aa|down_9|NC_022442.1_779570_780542_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2	946690-946847	1,2	PILER-CR,CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	12	946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815|946797-946815	NC_022442.1_815997-816015|NC_022442.1_825166-825184|NC_022442.1_1286816-1286834|NC_022442.1_1286874-1286892|NC_022442.1_1980244-1980262|NC_022442.1_2320467-2320449|NC_022442.1_183803-183821|NC_022442.1_616604-616586|NC_022442.1_926524-926506|NC_022442.1_1145459-1145441|NC_022442.1_1361452-1361470|NC_022442.1_1700238-1700256	NA:NA	2,1	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|192aa|up_9|NC_022442.1_933128_933704_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NC_022442.1_933708_934233_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NC_022442.1_934248_934824_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NC_022442.1_934983_938460_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NC_022442.1_938460_942114_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NC_022442.1_942279_943182_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NC_022442.1_943509_943899_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NC_022442.1_944070_945387_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NC_022442.1_945438_946263_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NC_022442.1_946376_946685_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NC_022442.1_947338_949153_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NC_022442.1_949355_951965_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NC_022442.1_952023_952893_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NC_022442.1_953002_954148_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NC_022442.1_954131_954773_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NC_022442.1_955867_956383_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NC_022442.1_956693_957128_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NC_022442.1_957384_957570_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NC_022442.1_957864_958806_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NC_022442.1_958817_960062_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	3	1065218-1065310	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NC_022442.1_1065319_1065454_-,NA|432aa|down_1|NC_022442.1_1065605_1066901_+	NA|224aa|up_9|NC_022442.1_1053012_1053684_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NC_022442.1_1053676_1055866_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NC_022442.1_1055844_1057329_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NC_022442.1_1057321_1058350_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NC_022442.1_1058352_1058919_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NC_022442.1_1058933_1060412_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NC_022442.1_1060433_1061681_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NC_022442.1_1061946_1062753_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NC_022442.1_1062745_1064146_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NC_022442.1_1064160_1064736_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NC_022442.1_1065319_1065454_-	NA	NA|432aa|down_1|NC_022442.1_1065605_1066901_+	NA	NA|391aa|down_2|NC_022442.1_1067325_1068498_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_022442.1_1068551_1069094_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_022442.1_1069247_1069514_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_022442.1_1069516_1071235_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_022442.1_1071471_1071705_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_022442.1_1071902_1073264_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_022442.1_1073260_1074280_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_022442.1_1074412_1075075_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	4	1224107-1224199	4	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NC_022442.1_1213981_1214626_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NC_022442.1_1214632_1215274_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NC_022442.1_1215655_1215844_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NC_022442.1_1216286_1216661_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NC_022442.1_1216675_1218322_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NC_022442.1_1218511_1220572_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NC_022442.1_1220773_1221346_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NC_022442.1_1221350_1222337_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NC_022442.1_1222329_1223256_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NC_022442.1_1223248_1223983_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NC_022442.1_1224288_1224522_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NC_022442.1_1224637_1225369_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NC_022442.1_1225515_1229082_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NC_022442.1_1229081_1230332_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NC_022442.1_1230318_1230651_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NC_022442.1_1230676_1232044_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NC_022442.1_1232389_1232665_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NC_022442.1_1232852_1233356_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NC_022442.1_1233355_1234093_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NC_022442.1_1234195_1234546_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	5	1432165-1432244	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|68aa|up_5|NC_022442.1_1423645_1423849_-,NA	NA|379aa|up_9|NC_022442.1_1417995_1419132_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NC_022442.1_1419205_1420549_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NC_022442.1_1420773_1422660_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NC_022442.1_1422673_1423465_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NC_022442.1_1423645_1423849_-	NA	NA|270aa|up_4|NC_022442.1_1423877_1424687_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NC_022442.1_1425266_1426535_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NC_022442.1_1426548_1429347_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NC_022442.1_1429635_1430991_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NC_022442.1_1430987_1431647_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NC_022442.1_1432788_1433403_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NC_022442.1_1433419_1434490_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NC_022442.1_1434501_1435011_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NC_022442.1_1435410_1436901_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NC_022442.1_1437092_1437314_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NC_022442.1_1437313_1437814_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NC_022442.1_1437825_1438254_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NC_022442.1_1438246_1438780_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NC_022442.1_1438869_1439709_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NC_022442.1_1439723_1440203_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	6	1978791-1978872	6	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|92aa|up_6|NC_022442.1_1972988_1973264_+,NA|129aa|up_1|NC_022442.1_1977246_1977633_-,NA|138aa|down_1|NC_022442.1_1980555_1980969_-,NA|37aa|down_2|NC_022442.1_1980997_1981108_-,NA|31aa|down_6|NC_022442.1_1984113_1984206_-	NA|419aa|up_9|NC_022442.1_1970911_1972168_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_022442.1_1972170_1972371_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_022442.1_1972517_1972982_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_022442.1_1972988_1973264_+	NA	NA|406aa|up_5|NC_022442.1_1973541_1974759_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_022442.1_1974871_1975501_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_022442.1_1975490_1976534_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_022442.1_1976530_1977232_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_022442.1_1977246_1977633_-	NA	NA|253aa|up_0|NC_022442.1_1977849_1978608_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_022442.1_1979136_1980123_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NC_022442.1_1980555_1980969_-	NA	NA|37aa|down_2|NC_022442.1_1980997_1981108_-	NA	NA|244aa|down_3|NC_022442.1_1981193_1981925_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NC_022442.1_1981926_1983240_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NC_022442.1_1983531_1984032_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NC_022442.1_1984113_1984206_-	NA	DEDDh|185aa|down_7|NC_022442.1_1984422_1984977_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NC_022442.1_1985043_1986114_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NC_022442.1_1986360_1986891_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	7	2038562-2038647	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|59aa|up_8|NC_022442.1_2028702_2028879_-,NA|33aa|up_7|NC_022442.1_2029120_2029219_-,NA	NA|127aa|up_9|NC_022442.1_2027781_2028162_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_8|NC_022442.1_2028702_2028879_-	NA	NA|33aa|up_7|NC_022442.1_2029120_2029219_-	NA	NA|429aa|up_6|NC_022442.1_2029418_2030705_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|97aa|up_5|NC_022442.1_2030983_2031274_-	pfam03642, MAP, MAP domain	NA|479aa|up_4|NC_022442.1_2031284_2032721_-	pfam03642, MAP, MAP domain	NA|331aa|up_3|NC_022442.1_2033109_2034102_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NC_022442.1_2034594_2035611_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_022442.1_2035632_2036688_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_022442.1_2037123_2038347_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_022442.1_2038787_2040095_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NC_022442.1_2040635_2042252_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NC_022442.1_2042327_2042612_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NC_022442.1_2042786_2043530_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NC_022442.1_2043554_2044754_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NC_022442.1_2044950_2045577_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NC_022442.1_2045937_2046723_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NC_022442.1_2047321_2047456_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_8|NC_022442.1_2047691_2048261_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NC_022442.1_2048257_2048398_+	pfam05931, AgrD, Staphylococcal AgrD protein
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	8	2286145-2286229	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	3	2286175-2286199|2286175-2286199|2286175-2286199	NC_022442.1_1149602-1149578|NC_022442.1_1874495-1874519|NC_022442.1_2286231-2286255	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NC_022442.1_2276652_2276817_+,NA|106aa|up_8|NC_022442.1_2277061_2277379_+,NA|84aa|up_5|NC_022442.1_2282503_2282755_+,NA|57aa|up_0|NC_022442.1_2285895_2286066_+,NA	NA|55aa|up_9|NC_022442.1_2276652_2276817_+	NA	NA|106aa|up_8|NC_022442.1_2277061_2277379_+	NA	NA|1056aa|up_7|NC_022442.1_2277565_2280733_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_022442.1_2280849_2282115_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_022442.1_2282503_2282755_+	NA	NA|255aa|up_4|NC_022442.1_2282746_2283511_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_022442.1_2283673_2284114_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_022442.1_2284106_2285318_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_022442.1_2285419_2285770_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_022442.1_2285895_2286066_+	NA	NA|341aa|down_0|NC_022442.1_2286406_2287429_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_022442.1_2287448_2288048_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_022442.1_2288054_2288288_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_022442.1_2288293_2288740_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_022442.1_2288753_2289239_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_022442.1_2289235_2290495_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_022442.1_2290557_2291052_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_022442.1_2291053_2291560_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_022442.1_2291590_2292595_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_022442.1_2292763_2293369_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	9	2440711-2440803	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_2|NC_022442.1_2438364_2438469_+,NA|32aa|down_0|NC_022442.1_2441007_2441103_-	NA|200aa|up_9|NC_022442.1_2431841_2432441_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NC_022442.1_2432459_2432822_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NC_022442.1_2433076_2434327_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NC_022442.1_2434423_2435155_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NC_022442.1_2435151_2435871_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NC_022442.1_2435851_2436631_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NC_022442.1_2436751_2438191_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NC_022442.1_2438364_2438469_+	NA	NA|229aa|up_1|NC_022442.1_2438622_2439309_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NC_022442.1_2439634_2440501_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NC_022442.1_2441007_2441103_-	NA	NA|437aa|down_1|NC_022442.1_2441197_2442508_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NC_022442.1_2442999_2443929_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NC_022442.1_2444496_2445444_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NC_022442.1_2445445_2446423_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NC_022442.1_2446474_2446942_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NC_022442.1_2446952_2447645_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NC_022442.1_2447655_2448771_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NC_022442.1_2448748_2449756_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NC_022442.1_2449757_2451116_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_000470845.1_ASM47084v1	NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	10	2783260-2783345	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	13	2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315|2783290-2783315	NC_022442.1_616670-616645|NC_022442.1_1149547-1149522|NC_022442.1_1149717-1149692|NC_022442.1_1286749-1286774|NC_022442.1_779068-779043|NC_022442.1_779124-779099|NC_022442.1_825042-825067|NC_022442.1_1845674-1845649|NC_022442.1_2028516-2028541|NC_022442.1_2203769-2203794|NC_022442.1_2320532-2320507|NC_022442.1_2124456-2124431|NC_022442.1_2124794-2124769	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NC_022442.1_2778737_2778929_+,NA|166aa|up_5|NC_022442.1_2779535_2780033_-,NA|64aa|up_4|NC_022442.1_2780489_2780681_+,NA	NA|171aa|up_9|NC_022442.1_2775214_2775727_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NC_022442.1_2776016_2776775_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NC_022442.1_2776764_2778645_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NC_022442.1_2778737_2778929_+	NA	NA|166aa|up_5|NC_022442.1_2779535_2780033_-	NA	NA|64aa|up_4|NC_022442.1_2780489_2780681_+	NA	NA|67aa|up_3|NC_022442.1_2781072_2781273_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_022442.1_2781399_2781969_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NC_022442.1_2782219_2782615_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_022442.1_2782682_2783036_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NC_022442.1_2783645_2784485_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NC_022442.1_2784527_2785247_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NC_022442.1_2785246_2787124_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NC_022442.1_2787190_2788570_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NC_022442.1_2788713_2789067_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NC_022442.1_2789187_2789325_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
