The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	747933	755753	2789538		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|747933_748989_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|748988_749675_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|749649_750123_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|750464_750905_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|751184_751769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|751867_752581_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|752584_753004_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|753005_753674_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|754024_754618_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217800.1|754601_755753_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	6.0e-23
>prophage 2
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	767734	782243	2789538		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663039.1|767734_768793_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|768951_769494_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429011.1|770101_771019_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|771111_771213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|771290_772796_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|773135_773636_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|773655_774522_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|775321_775720_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855509.1|775682_777788_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|777905_778877_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|779376_779532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876317.1|779570_780542_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	3.6e-138
WP_001245572.1|780528_781485_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|781481_782243_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	862738	884239	2789538	terminase,coat,integrase	Staphylococcus_phage(77.78%)	33	861045:861066	881707:881728
861045:861066	attL	AGGGAGTGGGACAGAAATGATA	NA	NA	NA	NA
WP_000571213.1|862738_863764_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|863756_864452_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|864469_865291_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|865433_866654_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|866741_867470_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033318.1|867493_868222_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	1.0e-28
WP_001228759.1|868291_868723_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|868739_869198_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|869209_869542_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|869734_869998_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|869990_870263_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|870274_870421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|870413_870623_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|870625_870946_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|871009_871879_+	primase alpha helix C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|871895_873365_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
WP_001039168.1|873650_874013_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|874014_874299_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|874295_874937_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|875453_875795_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|875806_876385_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|876402_876621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|876671_877199_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|877330_877543_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|877539_878109_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|878416_879217_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|879294_879852_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|880225_880378_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|880448_880559_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|880560_880746_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000752917.1|881869_882064_+	CsbD family protein	NA	NA	NA	NA	NA
881707:881728	attR	TATCATTTCTGTCCCACTCCCT	NA	NA	NA	NA
WP_001183851.1|882297_883149_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|883477_884239_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	974186	1018240	2789538	tRNA,bacteriocin,transposase,protease	Streptococcus_phage(40.0%)	38	NA	NA
WP_000448937.1|974186_975176_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|975470_975866_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|976236_976956_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959298.1|977076_978063_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|978110_979919_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|980378_981185_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214067.1|981207_981573_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|981676_982270_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|982455_982803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|982819_983455_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|983471_984281_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669925.1|984277_985132_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|985152_986538_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|986547_988392_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|988670_989441_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|989637_990723_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|991064_992633_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889183.1|992775_993534_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|993699_994425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|994426_995278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|996012_996522_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154228.1|996634_997825_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|997802_998978_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|999410_1000895_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|1000875_1001136_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049958.1|1001135_1002698_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.2e-35
WP_000928413.1|1002999_1003803_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078064575.1|1004018_1006343_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1006359_1007718_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|1007856_1009368_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1009856_1010426_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1010635_1010854_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1010934_1011921_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1012119_1012296_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1012310_1012913_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014363402.1|1013308_1014955_+|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.3	3.7e-292
WP_029656376.1|1015965_1016232_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
WP_000870825.1|1016275_1018240_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 5
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1050446	1058919	2789538		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1050446_1050929_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010401.1|1050915_1052040_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1052043_1052748_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1052747_1053011_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1053012_1053684_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032747.1|1053676_1055866_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1055844_1057329_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030810.1|1057321_1058350_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1058352_1058919_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1316911	1321860	2789538		Staphylococcus_phage(100.0%)	9	NA	NA
WP_001659797.1|1316911_1317109_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1317797_1318022_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1318317_1318524_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001788716.1|1319219_1319330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1319758_1319944_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1320455_1320560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1320686_1320938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1321411_1321666_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1321665_1321860_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
>prophage 7
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1498712	1575708	2789538	tRNA,tail,protease,portal,terminase,integrase,capsid,holin,head	Staphylococcus_phage(84.15%)	107	1558530:1558544	1576512:1576526
WP_000858801.1|1498712_1500005_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525064.1|1500326_1503020_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.6	1.1e-46
WP_000049916.1|1503043_1504015_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361537.1|1504001_1505204_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	5.4e-35
WP_000690024.1|1505208_1506351_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1506608_1506926_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1507261_1507942_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154692.1|1508013_1508601_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005216.1|1508590_1509166_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389518.1|1509179_1510424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245912.1|1510430_1511729_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776330.1|1511738_1512803_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269940.1|1512828_1513995_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1514381_1514582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442477.1|1514791_1515241_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096478.1|1515332_1516292_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1516293_1517019_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1517021_1517594_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1518024_1518297_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161742.1|1518467_1519466_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1519482_1520793_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1521009_1522185_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031844924.1|1522440_1522632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031844926.1|1522748_1522853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644394.1|1522895_1523555_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681761.1|1523631_1524600_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1524714_1525701_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001824277.1|1525861_1525978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069308.1|1526102_1527563_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902114.1|1527715_1529095_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.2e-56
WP_001163813.1|1529084_1530038_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1530145_1530394_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1530499_1531045_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476869.1|1531447_1532392_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476889.1|1532449_1533355_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000470325.1|1533445_1533631_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	96.7	1.9e-24
WP_024937002.1|1533879_1534863_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1534858_1535797_-	beta-channel forming cytolysin	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909204.1|1536186_1537641_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PF47	Staphylococcus_phage	100.0	7.5e-289
WP_000339141.1|1537651_1537954_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000340977.1|1538079_1538454_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1538509_1538797_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1538843_1538996_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582126.1|1538985_1542771_-	hypothetical protein	NA	G4KNR1	Staphylococcus_phage	100.0	0.0e+00
WP_000567420.1|1542786_1544271_-|tail	phage tail family protein	tail	G4KNR0	Staphylococcus_phage	100.0	1.6e-299
WP_000504558.1|1544270_1548812_-|tail	phage tail tape measure protein	tail	A0A2I6PE03	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|1549056_1549407_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1549456_1549681_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|1549722_1550367_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1550367_1550775_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1550771_1551176_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1551172_1551535_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1551518_1551803_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1551792_1552077_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1552096_1553242_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1553265_1554003_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025272.1|1553986_1555174_-|portal	phage portal protein	portal	G4KNQ1	Staphylococcus_phage	100.0	4.6e-220
WP_000625097.1|1555189_1556851_-|terminase	terminase large subunit	terminase	G4KNQ0	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1556847_1557192_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|1557322_1557622_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1557853_1558270_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1558297_1558498_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_001005262.1|1558497_1559148_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
1558530:1558544	attL	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_000237868.1|1559306_1559456_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	98.0	1.1e-17
WP_001125015.1|1559458_1559659_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|1559633_1559822_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001282074.1|1559818_1560064_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061834.1|1560100_1560607_-	dUTP diphosphatase	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_000889683.1|1560621_1560783_-	hypothetical protein	NA	A0A2I6PDW5	Staphylococcus_phage	100.0	2.4e-23
WP_000454994.1|1560783_1561065_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_000028424.1|1561065_1561239_-	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_001065099.1|1561228_1561480_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	100.0	6.4e-39
WP_000131388.1|1561494_1561737_-	hypothetical protein	NA	A0A2I6PDU1	Staphylococcus_phage	100.0	3.9e-41
WP_000029366.1|1561740_1562097_-	hypothetical protein	NA	G4KNP3	Staphylococcus_phage	100.0	1.1e-60
WP_001187236.1|1562097_1562283_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_021758092.1|1562287_1562692_-	DUF1064 domain-containing protein	NA	A0A059T5A5	Staphylococcus_phage	98.5	8.4e-73
WP_001123669.1|1562701_1562923_-	DUF3269 family protein	NA	A0A2I6PDV8	Staphylococcus_phage	100.0	1.7e-35
WP_000256594.1|1562935_1563094_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_021758094.1|1563087_1563867_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	99.2	2.4e-145
WP_021758096.1|1563876_1564647_-	phage protein	NA	G4KNP0	Staphylococcus_phage	99.6	1.9e-121
WP_000414755.1|1564712_1564994_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001081076.1|1564986_1565136_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_000057262.1|1565132_1565807_-	hypothetical protein	NA	G4KNN9	Staphylococcus_phage	100.0	8.6e-131
WP_001099007.1|1565818_1566262_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	100.0	1.4e-76
WP_000840496.1|1566258_1566909_-	ERF family protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001004336.1|1566909_1567446_-	host-nuclease inhibitor Gam family protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_001556704.1|1567458_1567719_-	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_000829613.1|1567723_1568041_-	hypothetical protein	NA	Q4ZAS8	Staphylococcus_virus	100.0	3.9e-33
WP_001285954.1|1568129_1568291_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124198.1|1568302_1568566_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001037095.1|1568595_1568814_-	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
WP_001662405.1|1569212_1569350_-	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_000435343.1|1569369_1569630_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148617.1|1569642_1570395_-	phage antirepressor KilAC domain-containing protein	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
WP_000801108.1|1570455_1570683_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000502678.1|1570684_1570876_-	hypothetical protein	NA	A0A2I6PDT1	Staphylococcus_phage	100.0	9.5e-27
WP_000772137.1|1570932_1571142_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|1571134_1571275_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435346.1|1571289_1571733_-	hypothetical protein	NA	G4KNN0	Staphylococcus_phage	100.0	2.0e-75
WP_021758098.1|1571745_1571985_-	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	98.7	2.0e-37
WP_000094093.1|1572155_1572863_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001049399.1|1572874_1573030_+	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	6.3e-21
WP_001089804.1|1573016_1573202_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1573401_1573584_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1573619_1573766_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191466.1|1573762_1574377_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1574502_1575708_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
1576512:1576526	attR	TAATTCTTTCTTTTA	NA	NA	NA	NA
>prophage 8
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1636523	1644835	2789538	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1636523_1637309_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924210.1|1637434_1638325_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062177.1|1638334_1639681_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1639794_1640895_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1640897_1641575_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1641705_1642812_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1643035_1644835_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1715480	1724523	2789538	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1715480_1715999_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594983.1|1716020_1718294_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	2.1e-64
WP_000749798.1|1718496_1720776_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1721050_1721311_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1721329_1722469_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019166.1|1722491_1723517_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1723518_1724523_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1850364	1896291	2789538	tRNA,protease	Staphylococcus_phage(94.29%)	43	NA	NA
WP_001050576.1|1850364_1856922_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	93.2	1.2e-290
WP_000836467.1|1857247_1857559_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	5.3e-51
WP_001557386.1|1857580_1859998_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025062.1|1860286_1861468_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	1.2e-217
WP_000526539.1|1861577_1862531_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764429.1|1862527_1863091_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	9.2e-102
WP_000757543.1|1863210_1863612_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1864183_1865011_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1865013_1865133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1865244_1866246_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1866367_1866832_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159028.1|1866844_1868026_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493883.1|1868036_1868669_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_000077340.1|1868675_1869719_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	1.2e-195
WP_001261664.1|1870199_1871702_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1872223_1872538_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1872537_1873830_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1873847_1874240_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_001032836.1|1874644_1875499_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384172.1|1875774_1875999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153740.1|1876776_1877220_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030460.1|1877206_1877650_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	5.4e-57
WP_025175276.1|1877947_1878583_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_000492902.1|1878749_1879370_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1879838_1880552_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1880809_1881112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1881367_1881733_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1881729_1882083_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1882332_1883166_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000366163.1|1883377_1884286_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1884410_1885604_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109912.1|1885975_1887568_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078065176.1|1887861_1888608_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1888612_1889086_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1889151_1889409_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778518.1|1889405_1890407_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	4.8e-186
WP_000348384.1|1890411_1891890_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	3.4e-281
WP_078065177.1|1892049_1892505_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_078065147.1|1892807_1893458_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.1	1.2e-31
WP_000070638.1|1893538_1894534_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1894609_1895236_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1895276_1895618_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1895718_1896291_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 11
NC_022442	Staphylococcus aureus subsp. aureus SA957, complete sequence	2789538	1901845	1910160	2789538	transposase	Staphylococcus_phage(66.67%)	9	NA	NA
WP_001044434.1|1901845_1902700_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_051335094.1|1902950_1903496_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1903912_1904092_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1904402_1904663_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1904715_1905066_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1905750_1906200_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_001066124.1|1906931_1907693_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1907685_1908978_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000206347.1|1909371_1910160_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
