assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000466785.3_ASM46678v3	NZ_CP011536	Lactobacillus fermentum 3872 chromosome, complete genome	1	1032229-1034574	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas14j,cas1,cas2,csn2,Cas14u_CAS-V	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	Type II-A	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	33,35,35,33	35	TypeV,TypeII-A	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	NA,NA|194aa|down_3|NZ_CP011536.1_1036365_1036947_+,NA|98aa|down_6|NZ_CP011536.1_1040124_1040418_+,NA|114aa|down_9|NZ_CP011536.1_1042244_1042586_+	NA|148aa|up_9|NZ_CP011536.1_1018507_1018951_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|271aa|up_8|NZ_CP011536.1_1018965_1019778_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|214aa|up_7|NZ_CP011536.1_1019839_1020481_-	PRK00043, thiE, thiamine phosphate synthase	NA|266aa|up_6|NZ_CP011536.1_1020645_1021443_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|255aa|up_5|NZ_CP011536.1_1021465_1022230_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|656aa|up_4|NZ_CP011536.1_1022675_1024643_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|333aa|up_3|NZ_CP011536.1_1029263_1030262_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas1|283aa|up_2|NZ_CP011536.1_1030400_1031249_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP011536.1_1031226_1031532_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP011536.1_1031528_1032200_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|144aa|down_0|NZ_CP011536.1_1034841_1035273_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|131aa|down_1|NZ_CP011536.1_1035288_1035681_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|77aa|down_2|NZ_CP011536.1_1035805_1036036_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|194aa|down_3|NZ_CP011536.1_1036365_1036947_+	NA	Cas14u_CAS-V|415aa|down_4|NZ_CP011536.1_1037062_1038307_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|318aa|down_5|NZ_CP011536.1_1038578_1039532_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|98aa|down_6|NZ_CP011536.1_1040124_1040418_+	NA	NA|321aa|down_7|NZ_CP011536.1_1040473_1041436_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|250aa|down_8|NZ_CP011536.1_1041435_1042185_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|114aa|down_9|NZ_CP011536.1_1042244_1042586_+	NA
GCF_000466785.3_ASM46678v3	NZ_CP011536	Lactobacillus fermentum 3872 chromosome, complete genome	2	1501894-1503105	2,3,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCACCCCCACGAAGGAGTGCGAC,ATTTCAATCCACGCACCCCCACGAAGGAGTGCGAC,ATTTCAATCCACGCACCCCCACGAAGGAGTGCGAC	35,35,35	0	0	NA	NA	NA:NA:NA	17,16,16	17	TypeI-U?,TypeI-C,TypeI-U	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	NA,NA	NA|288aa|up_9|NZ_CP011536.1_1488782_1489646_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|458aa|up_8|NZ_CP011536.1_1489982_1491356_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|269aa|up_7|NZ_CP011536.1_1491484_1492291_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|306aa|up_6|NZ_CP011536.1_1492522_1493440_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_5|NZ_CP011536.1_1493452_1496632_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_4|NZ_CP011536.1_1496631_1497714_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_3|NZ_CP011536.1_1497715_1499005_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_2|NZ_CP011536.1_1499004_1499970_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|96aa|up_1|NZ_CP011536.1_1500668_1500956_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_0|NZ_CP011536.1_1500979_1501858_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|293aa|down_0|NZ_CP011536.1_1503204_1504083_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|down_1|NZ_CP011536.1_1504106_1504394_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|97aa|down_2|NZ_CP011536.1_1505554_1505845_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_3|NZ_CP011536.1_1505854_1506886_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_4|NZ_CP011536.1_1506882_1507539_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7|293aa|down_5|NZ_CP011536.1_1507542_1508421_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|634aa|down_6|NZ_CP011536.1_1508442_1510344_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|247aa|down_7|NZ_CP011536.1_1510340_1511081_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|813aa|down_8|NZ_CP011536.1_1511093_1513532_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|407aa|down_9|NZ_CP011536.1_1513650_1514871_-	pfam00872, Transposase_mut, Transposase, Mutator family
GCF_000466785.3_ASM46678v3	NZ_CP011536	Lactobacillus fermentum 3872 chromosome, complete genome	3	1504461-1505396	3,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCACCCCCACGAAGGAGTGCGAC,ATTTCAATCCACGCACCCCCACGAAGGAGTGCGAC,ATTTCAATCCACGCACCCCCACGAAGGAGTGCGAC	35,35,35	0	0	NA	NA	NA:NA:NA	13,13,12	13	TypeI-U?,TypeI-C,TypeI-U	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	NA,NA	NA|269aa|up_9|NZ_CP011536.1_1491484_1492291_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|306aa|up_8|NZ_CP011536.1_1492522_1493440_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|1060aa|up_7|NZ_CP011536.1_1493452_1496632_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|361aa|up_6|NZ_CP011536.1_1496631_1497714_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_5|NZ_CP011536.1_1497715_1499005_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_4|NZ_CP011536.1_1499004_1499970_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|96aa|up_3|NZ_CP011536.1_1500668_1500956_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_2|NZ_CP011536.1_1500979_1501858_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|293aa|up_1|NZ_CP011536.1_1503204_1504083_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_0|NZ_CP011536.1_1504106_1504394_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|97aa|down_0|NZ_CP011536.1_1505554_1505845_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NZ_CP011536.1_1505854_1506886_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|NZ_CP011536.1_1506882_1507539_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7|293aa|down_3|NZ_CP011536.1_1507542_1508421_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|634aa|down_4|NZ_CP011536.1_1508442_1510344_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|247aa|down_5|NZ_CP011536.1_1510340_1511081_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|813aa|down_6|NZ_CP011536.1_1511093_1513532_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|407aa|down_7|NZ_CP011536.1_1513650_1514871_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|85aa|down_8|NZ_CP011536.1_1514905_1515160_-	pfam13936, HTH_38, Helix-turn-helix domain	NA|120aa|down_9|NZ_CP011536.1_1515445_1515805_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_000466785.3_ASM46678v3	NZ_CP011537	Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence	1	7091-7246	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTACAAGCGAAAGTCTAAAAAATAGAC	36	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,DEDDh,csa3,cas1,cas2,csn2,Cas14u_CAS-V,WYL,DinG,cas4,cas7,cas8c,cas5	NA|209aa|up_4|NZ_CP011537.1_2570_3197_-,NA|151aa|up_2|NZ_CP011537.1_4082_4535_-,NA|80aa|up_0|NZ_CP011537.1_5869_6109_+,NA|93aa|down_2|NZ_CP011537.1_9576_9855_-,NA|76aa|down_3|NZ_CP011537.1_9877_10105_-,NA|205aa|down_5|NZ_CP011537.1_12852_13467_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|445aa|up_6|NZ_CP011537.1_0_1335_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|195aa|up_5|NZ_CP011537.1_1662_2247_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|209aa|up_4|NZ_CP011537.1_2570_3197_-	NA	NA|95aa|up_3|NZ_CP011537.1_3408_3693_-	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|151aa|up_2|NZ_CP011537.1_4082_4535_-	NA	NA|264aa|up_1|NZ_CP011537.1_5006_5798_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|80aa|up_0|NZ_CP011537.1_5869_6109_+	NA	NA|99aa|down_0|NZ_CP011537.1_7807_8104_+	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain	NA|91aa|down_1|NZ_CP011537.1_8387_8660_+	pfam08998, Epsilon_antitox, Bacterial epsilon antitoxin	NA|93aa|down_2|NZ_CP011537.1_9576_9855_-	NA	NA|76aa|down_3|NZ_CP011537.1_9877_10105_-	NA	NA|688aa|down_4|NZ_CP011537.1_10357_12421_+	pfam03389, MobA_MobL, MobA/MobL family	NA|205aa|down_5|NZ_CP011537.1_12852_13467_+	NA	NA|112aa|down_6|NZ_CP011537.1_13468_13804_+	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|121aa|down_7|NZ_CP011537.1_13824_14187_+	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|220aa|down_8|NZ_CP011537.1_14155_14815_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|673aa|down_9|NZ_CP011537.1_14826_16845_+	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC
