The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022356	Haemophilus influenzae KR494, complete sequence	1856176	642646	722576	1856176	head,transposase,terminase,capsid,tail,tRNA,plate,protease	Haemophilus_phage(38.71%)	66	NA	NA
WP_021034819.1|642646_644005_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_021034817.1|644196_646065_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_021034820.1|646152_647712_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_021034821.1|647781_648297_+	signal peptidase II	NA	NA	NA	NA	NA
WP_021034822.1|648293_649238_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_021034824.1|649405_649753_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_021034825.1|649999_650998_+	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA	NA
WP_021034826.1|651002_652619_+	thiamine/thiamine pyrophosphate ABC transporter, permease protein	NA	NA	NA	NA	NA
WP_021034827.1|652602_653250_+	thiamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	9.8e-23
WP_014550962.1|653362_654364_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_041175289.1|654487_656485_-	transketolase	NA	NA	NA	NA	NA
WP_021034830.1|656864_657809_+	phosphoserine phosphatase	NA	NA	NA	NA	NA
WP_005651674.1|657826_658318_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_021034831.1|658613_659561_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA	NA
WP_021034832.1|659560_660106_+	YggT family protein	NA	NA	NA	NA	NA
WP_014550958.1|660279_661116_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_041175290.1|661542_662745_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_021034835.1|663087_663990_-	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	32.1	6.7e-30
WP_021034836.1|663983_664943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080228100.1|665150_666386_-	meth protein	NA	NA	NA	NA	NA
WP_005669790.1|667123_667624_-	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	31.4	9.2e-13
WP_005669792.1|667623_668235_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	3.0e-21
WP_041175291.1|668346_669186_-	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	33.2	2.9e-19
WP_005669796.1|669187_669805_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	2.2e-72
WP_021034840.1|669815_672236_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.4	2.4e-223
WP_021034841.1|672488_673598_+	transglutaminase family protein	NA	NA	NA	NA	NA
WP_021034842.1|673572_673935_+	MerT	NA	NA	NA	NA	NA
WP_021034843.1|673943_674222_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_021034845.1|675015_675669_-	capsule polysaccharide exporter ATP-binding protein BexA	NA	M1HXU1	Acanthocystis_turfacea_Chlorella_virus	25.6	9.3e-05
WP_021034846.1|675665_676463_-	capsule polysaccharide exporter permease BexB	NA	NA	NA	NA	NA
WP_021034847.1|676462_677596_-	capsule polysaccharide exporter BexC	NA	NA	NA	NA	NA
WP_021034848.1|677610_678795_-	capsule polysaccharide exporter BexD	NA	NA	NA	NA	NA
WP_021034849.1|679156_680251_+	Stealth CR1 domain-containing protein	NA	NA	NA	NA	NA
WP_021034850.1|680259_682923_+	bifunctional glycosyltransferase family 2 protein/CDP-glycerol:glycerophosphate glycerophosphotransferase	NA	NA	NA	NA	NA
WP_021034851.1|682915_684055_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_021034852.1|684124_686167_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_021034853.1|686220_687441_+	capsule polysaccharide modification protein HcsB	NA	NA	NA	NA	NA
WP_021034855.1|690565_691531_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_021034856.1|691520_692408_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_041175397.1|694053_694470_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	66.4	4.2e-51
WP_041175292.1|694515_695652_+|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	56.7	1.6e-121
WP_021034860.1|696449_696668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005641687.1|697639_697759_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_021034863.1|699052_700126_-	hypothetical protein	NA	H6W7W2	Escherichia_phage	30.9	2.5e-07
WP_172454002.1|701037_701634_-	DUF2313 domain-containing protein	NA	F6MIL7	Haemophilus_phage	63.0	2.3e-66
WP_021034866.1|701630_702695_-|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	66.9	9.8e-129
WP_041175293.1|702709_703060_-	phage GP46 family protein	NA	A0A0M3LQK5	Mannheimia_phage	73.3	1.2e-43
WP_021034868.1|703129_703765_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	58.3	4.7e-62
WP_021034869.1|703774_704899_-	bacteriophage Mu P family protein	NA	F6MIL3	Haemophilus_phage	72.7	1.4e-146
WP_021034870.1|704888_706223_-	DNA circularization N-terminal domain-containing protein	NA	F6MIL2	Haemophilus_phage	45.6	6.3e-109
WP_021034873.1|708550_708757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021034874.1|708771_709113_-	hypothetical protein	NA	A0A0M3LSI2	Mannheimia_phage	50.5	1.8e-20
WP_021034875.1|709112_709484_-	hypothetical protein	NA	A0A0M3LRV6	Mannheimia_phage	65.0	1.2e-36
WP_021034876.1|709493_710909_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B7SDP8	Haemophilus_phage	62.6	1.1e-156
WP_041175294.1|710901_711084_-	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	63.3	1.0e-09
WP_021034878.1|711055_711718_-	DUF1834 family protein	NA	A0A0M3LQJ7	Mannheimia_phage	45.0	1.2e-44
WP_021034879.1|711701_712133_-	DUF1320 domain-containing protein	NA	B7SDP4	Haemophilus_phage	60.9	1.3e-36
WP_021034880.1|712142_712448_-	hypothetical protein	NA	B7SDP3	Haemophilus_phage	47.0	6.9e-19
WP_021034881.1|712511_713435_-|head	Mu-like prophage major head subunit gpT family protein	head	B7SDP1	Haemophilus_phage	75.2	1.4e-134
WP_021034882.1|713434_714472_-|protease	phage protease	protease	B7SDN9	Haemophilus_phage	46.7	7.2e-68
WP_021034883.1|714754_715171_-	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	66.7	2.1e-47
WP_021034884.1|715293_716601_-|capsid	minor capsid protein	capsid	A0A0M3LSH7	Mannheimia_phage	67.4	3.1e-161
WP_021034885.1|716584_718207_-	DUF935 domain-containing protein	NA	B7SDN1	Haemophilus_phage	68.3	7.0e-203
WP_021034886.1|718287_719928_-|terminase	phage terminase large subunit	terminase	B7SDN0	Haemophilus_phage	77.8	9.4e-248
WP_005651690.1|720375_720654_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_021034888.1|720731_722576_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	4.8e-22
>prophage 2
NC_022356	Haemophilus influenzae KR494, complete sequence	1856176	1327119	1386308	1856176	head,capsid,holin,tail,protease,tRNA	Mannheimia_phage(30.77%)	47	NA	NA
WP_021035348.1|1327119_1327929_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_012054441.1|1328163_1329165_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	43.9	4.6e-72
WP_021035350.1|1329901_1331350_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_021035351.1|1331451_1332303_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.0	6.1e-49
WP_021035352.1|1332374_1334102_+	penicillin-binding protein activator	NA	NA	NA	NA	NA
WP_021035353.1|1334101_1334461_+	YraN family protein	NA	NA	NA	NA	NA
WP_021035354.1|1334473_1335058_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_021035355.1|1335114_1335696_+	divisome-associated lipoprotein YraP	NA	NA	NA	NA	NA
WP_041175349.1|1335950_1338221_+	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	67.5	3.7e-303
WP_005650087.1|1338363_1339494_+	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	1.6e-169
WP_021035357.1|1339608_1340838_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_041175350.1|1340944_1343752_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_021035359.1|1343948_1345034_-	YadA-like family protein	NA	NA	NA	NA	NA
WP_021035361.1|1345407_1346076_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_021035362.1|1346085_1346841_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_021035363.1|1346892_1347453_-	YcbK family protein	NA	NA	NA	NA	NA
WP_041175351.1|1347467_1348937_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_021035365.1|1348997_1351079_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	32.8	9.9e-85
WP_021035366.1|1351106_1351745_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_021035367.1|1351928_1353179_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
WP_021035368.1|1353162_1355808_+	PqiB family protein	NA	NA	NA	NA	NA
WP_021035369.1|1355862_1356315_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
WP_021035370.1|1356315_1356561_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
WP_005650053.1|1356562_1357045_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_021035371.1|1357136_1358150_-	GTP 3',8-cyclase MoaA	NA	D5GVS6	Campylobacter_virus	31.5	4.5e-06
WP_021035372.1|1358595_1359267_+	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA	NA
WP_005665006.1|1359879_1360815_+	KpsF/GutQ family sugar isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.2	6.1e-42
WP_012054717.1|1360824_1361367_+	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	44.2	6.3e-23
WP_021035373.1|1361484_1363620_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_021035374.1|1363687_1364353_-	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
WP_021035375.1|1364552_1365614_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.7	7.4e-20
WP_005631902.1|1365897_1366476_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_021035376.1|1366563_1367145_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_005631902.1|1371688_1372267_+	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_005631904.1|1372354_1372936_+	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_021035380.1|1372936_1375018_+	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_041175353.1|1375380_1376457_+	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_021035383.1|1376456_1377080_+	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_021035384.1|1377081_1377789_+	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_021035385.1|1377968_1378604_+	endonuclease III	NA	NA	NA	NA	NA
WP_041175354.1|1378662_1380036_+	sodium-dependent transporter	NA	NA	NA	NA	NA
WP_041175355.1|1382911_1383175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021035389.1|1383419_1383938_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	47.7	1.5e-37
WP_005689816.1|1383930_1384152_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_021035391.1|1384153_1384363_-|tail	tail protein X	tail	A0A0M3LPY0	Mannheimia_phage	43.8	1.0e-10
WP_021035392.1|1384362_1384869_-|head	head completion/stabilization protein	head	A0A0M3LNL8	Mannheimia_phage	50.7	1.4e-32
WP_021035395.1|1385501_1386308_-|capsid	GPO family capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	58.1	3.3e-60
