assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000464955.2_ASM46495v2	NZ_CP023541	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 chromosome, complete genome	1	622178-622327	1	CRISPRCasFinder	no	cas3	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Unclear	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|496aa|up_6|NZ_CP023541.1_613549_615037_+,NA|284aa|down_6|NZ_CP023541.1_631345_632197_+	NA|247aa|up_9|NZ_CP023541.1_611453_612194_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP023541.1_612236_612830_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP023541.1_612974_613427_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|496aa|up_6|NZ_CP023541.1_613549_615037_+	NA	NA|335aa|up_5|NZ_CP023541.1_615137_616142_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP023541.1_616303_616720_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP023541.1_616765_617269_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP023541.1_617461_618658_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP023541.1_618711_621567_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP023541.1_621566_622010_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP023541.1_622363_623875_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP023541.1_624141_625242_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP023541.1_625241_626324_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP023541.1_626442_627945_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP023541.1_628074_629094_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|415aa|down_5|NZ_CP023541.1_629560_630805_+	PRK09692, PRK09692, integrase; Provisional	NA|284aa|down_6|NZ_CP023541.1_631345_632197_+	NA	NA|417aa|down_7|NZ_CP023541.1_632270_633521_+	COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]	NA|378aa|down_8|NZ_CP023541.1_633517_634651_+	TIGR03187, hypothetical_protein, DGQHR domain	NA|927aa|down_9|NZ_CP023541.1_635243_638024_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA
GCF_000464955.2_ASM46495v2	NZ_CP023541	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 chromosome, complete genome	2	840073-840188	2	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|126aa|up_9|NZ_CP023541.1_826077_826455_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP023541.1_826457_827279_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP023541.1_827275_828265_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP023541.1_828264_829551_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP023541.1_829603_831958_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP023541.1_832212_833028_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP023541.1_833144_833804_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP023541.1_833815_836722_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP023541.1_836886_839238_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP023541.1_839312_840008_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP023541.1_840207_841710_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP023541.1_841720_843421_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP023541.1_843759_844638_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP023541.1_844723_845488_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP023541.1_845601_846300_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP023541.1_846283_847894_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP023541.1_847869_848853_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP023541.1_849016_850672_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP023541.1_850760_850892_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP023541.1_850993_852172_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_000464955.2_ASM46495v2	NZ_CP023541	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 chromosome, complete genome	3	3752836-3753535	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,10,10	11	TypeI-E	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP023541.1_3744709_3745471_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP023541.1_3745451_3746501_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP023541.1_3746497_3746977_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP023541.1_3746976_3747687_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP023541.1_3747705_3748017_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP023541.1_3748210_3748534_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP023541.1_3748583_3749189_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP023541.1_3749188_3750616_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP023541.1_3750617_3751526_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP023541.1_3751777_3752815_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP023541.1_3753631_3753925_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP023541.1_3753924_3754845_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP023541.1_3754841_3755492_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP023541.1_3755473_3756220_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP023541.1_3756230_3757286_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP023541.1_3757297_3757837_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP023541.1_3757833_3759396_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP023541.1_3759493_3762193_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP023541.1_3762386_3762539_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP023541.1_3762803_3763538_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000464955.2_ASM46495v2	NZ_CP023541	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 chromosome, complete genome	4	3779238-3780120	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA	29,29,25	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Unclear	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP023541.1_3781269_3781410_+	NA|424aa|up_9|NZ_CP023541.1_3767881_3769153_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP023541.1_3769143_3769404_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP023541.1_3769420_3769996_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP023541.1_3770143_3771037_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP023541.1_3771000_3771780_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP023541.1_3771757_3773167_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP023541.1_3773188_3774643_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP023541.1_3774712_3775498_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP023541.1_3775816_3777094_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP023541.1_3777120_3778599_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP023541.1_3780459_3781131_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP023541.1_3781269_3781410_+	NA	NA|291aa|down_2|NZ_CP023541.1_3781423_3782296_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP023541.1_3782355_3783654_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP023541.1_3783741_3785379_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP023541.1_3785606_3786398_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP023541.1_3786468_3786804_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP023541.1_3786803_3787052_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP023541.1_3787129_3789364_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP023541.1_3789411_3790713_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
