The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022221	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67, complete genome	4623089	781068	790239	4623089	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569175.1|781068_782016_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	1.6e-10
WP_000824854.1|781999_782731_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001747411.1|782711_782819_-	protein YohO	NA	NA	NA	NA	NA
WP_001240413.1|782878_783610_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	1.3e-100
WP_000272844.1|783832_785518_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.9	2.4e-278
WP_000598636.1|785514_786234_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950414.1|786280_786748_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	4.3e-73
WP_001197951.1|786804_787335_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703145.1|787506_787965_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	6.4e-53
WP_000195354.1|788205_790239_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	1.0e-54
>prophage 2
NC_022221	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67, complete genome	4623089	857432	867939	4623089		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001144951.1|857432_858836_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	4.0e-21
WP_000981469.1|859013_859907_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|860283_861369_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023658.1|861368_862268_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000857535.1|862315_863194_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_000973709.1|863194_863746_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_000018223.1|863751_864726_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|864741_865515_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565913.1|865519_866599_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000126349.1|866625_867939_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 3
NC_022221	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67, complete genome	4623089	1663965	1754262	4623089	lysis,integrase,terminase,tail,tRNA,portal,protease,holin	Enterobacteria_phage(27.66%)	98	1730640:1730654	1756031:1756045
WP_001221017.1|1663965_1664661_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000128810.1|1664718_1666629_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.4	8.5e-91
WP_000029550.1|1666759_1667104_+	RidA family protein	NA	NA	NA	NA	NA
WP_000457328.1|1667109_1667289_-	YoaH family protein	NA	NA	NA	NA	NA
WP_000978451.1|1667369_1668734_+	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	34.5	3.6e-43
WP_000381544.1|1668737_1669316_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_000624273.1|1669579_1670944_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_001192535.1|1671081_1672683_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
WP_000421815.1|1672704_1674264_-	CNNM family cation transport protein YoaE	NA	A0A0R6PEZ3	Moraxella_phage	44.4	9.5e-40
WP_000150523.1|1674736_1675705_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_000406920.1|1675757_1676558_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
WP_001518647.1|1676570_1677422_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
WP_001518359.1|1678348_1678915_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
WP_000010915.1|1678911_1679721_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
WP_000730310.1|1679786_1681532_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
WP_001062678.1|1681751_1681961_-	transcription antiterminator/RNA stability regulator CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
WP_001537930.1|1681973_1682117_-	YobF family protein	NA	NA	NA	NA	NA
WP_000714548.1|1683122_1683266_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
WP_001236777.1|1683423_1683663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001262195.1|1683874_1684666_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_001747327.1|1684841_1686215_+	MFS transporter	NA	NA	NA	NA	NA
WP_000984498.1|1686262_1687144_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001091237.1|1687336_1689385_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000431401.1|1689404_1690091_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_000145732.1|1690188_1690773_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_001207294.1|1690814_1692098_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_077909763.1|1692060_1694700_+	PqiB family protein	NA	NA	NA	NA	NA
WP_023164993.1|1694777_1696217_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_000978525.1|1696331_1696571_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_000457838.1|1696681_1696873_+	YebW family protein	NA	NA	NA	NA	NA
WP_000986172.1|1696891_1697542_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	5.5e-58
WP_001134856.1|1697765_1697930_-	membrane protein	NA	NA	NA	NA	NA
WP_000182072.1|1698215_1698938_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_000422882.1|1699621_1700017_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	9.2e-16
WP_000030934.1|1700346_1700823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001025514.1|1701195_1701615_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001532329.1|1701746_1701941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001576019.1|1701987_1702257_+	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	3.1e-07
WP_001576018.1|1702422_1702563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001674911.1|1704884_1705085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001233445.1|1705702_1706617_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000480735.1|1706749_1706908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000848072.1|1706917_1707532_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_001668484.1|1708284_1708551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000457876.1|1708679_1708805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525008.1|1709067_1709184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001576015.1|1709374_1709575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000178848.1|1712698_1712941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072100756.1|1712979_1713843_-	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	78.9	9.0e-48
WP_149022580.1|1713838_1716331_-	host specificity protein J	NA	A0A0P0ZEQ8	Stx2-converting_phage	67.5	0.0e+00
WP_001576012.1|1716402_1717107_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
WP_000606352.1|1717010_1717742_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.6	1.0e-113
WP_001152416.1|1717751_1718447_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
WP_000877926.1|1718536_1719070_+	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_000725267.1|1719186_1719684_-	outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000978295.1|1719782_1720115_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	2.6e-35
WP_077904894.1|1720111_1723099_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.0	1.1e-265
WP_010989009.1|1723178_1723508_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_000478857.1|1723504_1723903_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_000132760.1|1723948_1724698_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.2	3.1e-89
WP_000196704.1|1724709_1725111_-|tail	phage tail protein U	tail	K7PHM6	Enterobacterial_phage	59.4	3.8e-41
WP_000453192.1|1725107_1725674_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	95.7	2.1e-13
WP_000774239.1|1725654_1725954_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_001107908.1|1725946_1726270_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_010989008.1|1726360_1728442_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_077909778.1|1728365_1729883_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.5	7.1e-173
WP_000196190.1|1729909_1730116_-	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_000989241.1|1730112_1732251_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
1730640:1730654	attL	AAACGCGCCCGGCAA	NA	NA	NA	NA
WP_000371784.1|1732207_1732741_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_001541990.1|1732948_1733428_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000984586.1|1733445_1733898_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001574216.1|1733881_1734211_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001574215.1|1734486_1735173_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.6	1.8e-131
WP_000798708.1|1735533_1735983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001574213.1|1736356_1736881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097218.1|1736977_1737667_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.9	2.1e-60
WP_000784710.1|1737796_1738024_-	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	66.7	2.2e-14
WP_000940753.1|1738020_1738620_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	4.7e-96
WP_000972672.1|1738683_1738989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001676972.1|1739411_1739603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024143656.1|1739620_1741600_-	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	2.5e-162
WP_000529511.1|1741996_1743127_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_000089416.1|1743413_1743809_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	38.8	9.8e-18
WP_000140162.1|1743821_1744283_-	hypothetical protein	NA	A0A0U2JGJ0	Escherichia_phage	75.5	3.5e-67
WP_000729536.1|1744275_1745274_-	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.3	4.1e-121
WP_001574210.1|1745320_1745815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033912.1|1745801_1746056_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
WP_001574209.1|1746154_1746553_+	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	56.0	1.2e-18
WP_000687579.1|1746955_1747222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000103933.1|1747559_1747835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682660.1|1747838_1748045_+	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
WP_000799627.1|1748120_1748456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000023717.1|1748596_1751287_+	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	72.8	4.0e-118
WP_001126031.1|1751279_1752110_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.3e-104
WP_000280163.1|1752156_1752342_+	DUF1187 family protein	NA	NA	NA	NA	NA
WP_001574207.1|1752632_1752869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001575998.1|1752929_1753208_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
WP_000087636.1|1753182_1754262_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	3.0e-101
1756031:1756045	attR	TTGCCGGGCGCGTTT	NA	NA	NA	NA
>prophage 4
NC_022221	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67, complete genome	4623089	2057129	2064442	4623089	protease	Ralstonia_phage(16.67%)	7	NA	NA
WP_001746929.1|2057129_2057507_+	hypothetical protein	NA	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2057668_2057866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934060.1|2058078_2060355_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.1	4.0e-164
WP_000520789.1|2060385_2060706_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2061029_2061251_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125872.1|2061380_2063327_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_001201751.1|2063323_2064442_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
