assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	1	109732-109813	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	GGGGCCCCAACACAGAGAATTTCGAAA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA	NA|382aa|up_9|NZ_CP012409.1_63338_64484_+	COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|111aa|up_8|NZ_CP012409.1_64567_64900_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|446aa|up_7|NZ_CP012409.1_65108_66446_-	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|1147aa|up_6|NZ_CP012409.1_66749_70190_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|293aa|up_5|NZ_CP012409.1_70209_71088_+	smart00475, 53EXOc, 5'-3' exonuclease	NA|373aa|up_4|NZ_CP012409.1_71562_72681_+	COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism]	NA|347aa|up_3|NZ_CP012409.1_72775_73816_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|441aa|up_2|NZ_CP012409.1_73846_75169_+	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter	NA|464aa|up_1|NZ_CP012409.1_75324_76716_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|134aa|up_0|NZ_CP012409.1_109042_109444_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|235aa|down_0|NZ_CP012409.1_109922_110627_-	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only]	NA|65aa|down_1|NZ_CP012409.1_110871_111066_+	pfam10782, zf-C2HCIx2C, Zinc-finger	NA|84aa|down_2|NZ_CP012409.1_111077_111329_+	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal	NA|375aa|down_3|NZ_CP012409.1_111366_112491_+	pfam13769, Virulence_fact, Virulence factor	NA|146aa|down_4|NZ_CP012409.1_112506_112944_+	pfam06491, Disulph_isomer, Disulphide isomerase	NA|319aa|down_5|NZ_CP012409.1_113367_114324_+	TIGR03284, thym_sym, thymidylate synthase	NA|160aa|down_6|NZ_CP012409.1_114523_115003_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|280aa|down_7|NZ_CP012409.1_115017_115857_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|178aa|down_8|NZ_CP012409.1_115942_116476_+	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|143aa|down_9|NZ_CP012409.1_116468_116897_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	2	337006-337098	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA	NA|117aa|up_9|NZ_CP012409.1_326569_326920_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP012409.1_327022_327760_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP012409.1_327759_328263_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP012409.1_328450_328726_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP012409.1_329160_330528_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP012409.1_330553_330886_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP012409.1_330872_332123_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP012409.1_332122_335689_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP012409.1_335835_336567_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP012409.1_336682_336916_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP012409.1_337285_338020_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP012409.1_338012_338939_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP012409.1_338931_339918_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP012409.1_339922_340495_-	PRK04424, PRK04424, transcription factor FapR	NA|550aa|down_4|NZ_CP012409.1_342945_344595_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_5|NZ_CP012409.1_344609_344984_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_6|NZ_CP012409.1_345426_345615_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_7|NZ_CP012409.1_345996_346638_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_8|NZ_CP012409.1_346644_347289_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|292aa|down_9|NZ_CP012409.1_347289_348165_-	COG1162, COG1162, Predicted GTPases [General function prediction only]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	3	410913-411058	1	PILER-CR	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	GCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCC	34	2	18	410947-410968|410947-410968|410947-410968|410947-410968|410947-410968|410947-410968|410947-410968|410947-410968|410947-410968|411003-411024|411003-411024|411003-411024|411003-411024|411003-411024|411003-411024|411003-411024|411003-411024|411003-411024	NZ_CP012409.1_273484-273463|NZ_CP012409.1_414913-414934|NZ_CP012409.1_673904-673925|NZ_CP012409.1_1154996-1154975|NZ_CP012409.1_2401619-2401598|NZ_CP012409.1_150016-149995|NZ_CP012409.1_554050-554029|NZ_CP012409.1_1315759-1315780|NZ_CP012409.1_2734568-2734547|NZ_CP012409.1_273484-273463|NZ_CP012409.1_414913-414934|NZ_CP012409.1_673904-673925|NZ_CP012409.1_1154996-1154975|NZ_CP012409.1_2401619-2401598|NZ_CP012409.1_150016-149995|NZ_CP012409.1_554050-554029|NZ_CP012409.1_1315759-1315780|NZ_CP012409.1_2734568-2734547	NA	2	2	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|76aa|up_6|NZ_CP012409.1_403630_403858_-,NA|75aa|down_0|NZ_CP012409.1_411273_411498_-,NA|49aa|down_1|NZ_CP012409.1_411454_411601_-,NA|78aa|down_2|NZ_CP012409.1_413708_413942_+,NA|62aa|down_3|NZ_CP012409.1_414561_414747_+,NA|169aa|down_6|NZ_CP012409.1_416577_417084_-	NA|45aa|up_9|NZ_CP012409.1_400888_401023_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP012409.1_401931_402120_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP012409.1_402367_403315_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP012409.1_403630_403858_-	NA	NA|497aa|up_5|NZ_CP012409.1_404166_405657_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP012409.1_405893_406826_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP012409.1_406848_407850_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP012409.1_408287_409013_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP012409.1_409108_409834_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP012409.1_409941_410658_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP012409.1_411273_411498_-	NA	NA|49aa|down_1|NZ_CP012409.1_411454_411601_-	NA	NA|78aa|down_2|NZ_CP012409.1_413708_413942_+	NA	NA|62aa|down_3|NZ_CP012409.1_414561_414747_+	NA	NA|117aa|down_4|NZ_CP012409.1_415317_415668_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_5|NZ_CP012409.1_415821_416319_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_6|NZ_CP012409.1_416577_417084_-	NA	NA|134aa|down_7|NZ_CP012409.1_417755_418157_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|106aa|down_8|NZ_CP012409.1_418525_418843_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|168aa|down_9|NZ_CP012409.1_419331_419835_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	4	724654-724731	3	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AGAGAATTTCGAAAAGAAATTCT	23	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|38aa|down_1|NZ_CP012409.1_725852_725966_-	NA|417aa|up_9|NZ_CP012409.1_715187_716438_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP012409.1_716543_717851_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP012409.1_717948_718710_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP012409.1_719037_719889_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP012409.1_720121_720316_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP012409.1_720906_721728_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP012409.1_721745_722441_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP012409.1_722433_723459_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP012409.1_723708_724005_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP012409.1_723997_724384_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP012409.1_724972_725851_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP012409.1_725852_725966_-	NA	NA|127aa|down_2|NZ_CP012409.1_726029_726410_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP012409.1_726567_726924_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP012409.1_727067_727388_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP012409.1_727537_728077_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP012409.1_728159_728876_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP012409.1_729023_729446_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP012409.1_729844_730339_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP012409.1_730493_731111_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	5	762671-762809	4	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TGCAAGTTGGGGTTGGGCCCCAACA	25	2	13	762696-762728|762696-762728|762696-762728|762696-762728|762696-762728|762696-762728|762696-762728|762696-762728|762696-762728|762696-762728|762754-762784|762754-762784|762754-762784	NZ_CP012409.1_123945-123977|NZ_CP012409.1_1569945-1569977|NZ_CP012409.1_2401576-2401608|NZ_CP012409.1_2734525-2734557|NZ_CP012409.1_414956-414924|NZ_CP012409.1_720552-720520|NZ_CP012409.1_762810-762842|NZ_CP012409.1_1189184-1189152|NZ_CP012409.1_2412195-2412227|NZ_CP012409.1_273441-273473|NZ_CP012409.1_762639-762669|NZ_CP012409.1_724708-724738|NZ_CP012409.1_1315690-1315660	NA	2	2	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|153aa|up_6|NZ_CP012409.1_754204_754663_-,NA	NA|791aa|up_9|NZ_CP012409.1_750629_753002_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP012409.1_753035_753776_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP012409.1_753904_754138_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP012409.1_754204_754663_-	NA	NA|435aa|up_5|NZ_CP012409.1_755002_756307_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP012409.1_756436_757954_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP012409.1_757956_758718_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP012409.1_758839_760030_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP012409.1_760168_761179_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP012409.1_761231_762245_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP012409.1_763057_763687_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP012409.1_764388_765291_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|545aa|down_2|NZ_CP012409.1_765497_767132_-	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|196aa|down_3|NZ_CP012409.1_767313_767901_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|332aa|down_4|NZ_CP012409.1_769524_770520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP012409.1_770516_771428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP012409.1_772079_773015_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP012409.1_773081_774521_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP012409.1_774528_775014_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP012409.1_775021_775861_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	6	771706-771793	5	CRISPRCasFinder	no	cas3	DinG,DEDDh,cas3,WYL,csa3	Unclear	CAATGCGAGTTGGGGTGTGGGCCCCAACA	29	1	5	771735-771764|771735-771764|771735-771764|771735-771764|771735-771764	NZ_CP012409.1_273497-273526|NZ_CP012409.1_1737397-1737368|NZ_CP012409.1_2014331-2014302|NZ_CP012409.1_2719998-2720027|NZ_CP012409.1_1189139-1189110	NA	1	1	Unclear	DinG,DEDDh,cas3,WYL,csa3	NA,NA	NA|254aa|up_9|NZ_CP012409.1_757956_758718_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP012409.1_758839_760030_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP012409.1_760168_761179_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP012409.1_761231_762245_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP012409.1_763057_763687_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP012409.1_764388_765291_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|545aa|up_3|NZ_CP012409.1_765497_767132_-	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|196aa|up_2|NZ_CP012409.1_767313_767901_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|332aa|up_1|NZ_CP012409.1_769524_770520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP012409.1_770516_771428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP012409.1_772079_773015_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP012409.1_773081_774521_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP012409.1_774528_775014_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP012409.1_775021_775861_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP012409.1_775866_776799_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP012409.1_777408_780255_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP012409.1_780262_782248_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP012409.1_782516_782753_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP012409.1_782749_783400_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP012409.1_783573_784413_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	7	808558-808636	6	CRISPRCasFinder	no	cas3	DinG,DEDDh,cas3,WYL,csa3	Unclear	TCAGTGTTGGGGCCCCGCCAACT	23	1	16	808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613|808581-808613	NZ_CP012409.1_273477-273445|NZ_CP012409.1_2014239-2014271|NZ_CP012409.1_2033437-2033469|NZ_CP012409.1_414920-414952|NZ_CP012409.1_673911-673943|NZ_CP012409.1_1154989-1154957|NZ_CP012409.1_1426804-1426772|NZ_CP012409.1_2556775-2556807|NZ_CP012409.1_123981-123949|NZ_CP012409.1_410898-410930|NZ_CP012409.1_554043-554011|NZ_CP012409.1_1569981-1569949|NZ_CP012409.1_1880897-1880865|NZ_CP012409.1_2362280-2362248|NZ_CP012409.1_2401612-2401580|NZ_CP012409.1_2734561-2734529	NA	1	1	Unclear	DinG,DEDDh,cas3,WYL,csa3	NA|52aa|up_0|NZ_CP012409.1_808196_808352_-,NA|69aa|down_3|NZ_CP012409.1_813150_813357_+	NA|107aa|up_9|NZ_CP012409.1_800649_800970_-	pfam11009, DUF2847, Protein of unknown function (DUF2847)	NA|293aa|up_8|NZ_CP012409.1_801123_802002_-	NF033194, lipo_EMYY, EMYY motif lipoprotein	NA|173aa|up_7|NZ_CP012409.1_802121_802640_+	pfam04229, GrpB, GrpB protein	NA|308aa|up_6|NZ_CP012409.1_802766_803690_+	PRK13906, murB, UDP-N-acetylmuramate dehydrogenase	NA|105aa|up_5|NZ_CP012409.1_803707_804022_+	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|343aa|up_4|NZ_CP012409.1_804338_805367_-	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|254aa|up_3|NZ_CP012409.1_805485_806247_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|319aa|up_2|NZ_CP012409.1_806243_807200_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_1|NZ_CP012409.1_807186_808158_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|52aa|up_0|NZ_CP012409.1_808196_808352_-	NA	NA|324aa|down_0|NZ_CP012409.1_808795_809767_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|down_1|NZ_CP012409.1_809884_811990_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|down_2|NZ_CP012409.1_811952_812351_-	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|69aa|down_3|NZ_CP012409.1_813150_813357_+	NA	NA|231aa|down_4|NZ_CP012409.1_813323_814016_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|down_5|NZ_CP012409.1_814035_814536_+	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|502aa|down_6|NZ_CP012409.1_814875_816381_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|306aa|down_7|NZ_CP012409.1_816647_817565_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|181aa|down_8|NZ_CP012409.1_818116_818659_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|353aa|down_9|NZ_CP012409.1_818817_819876_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	8	870690-870788	7	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|100aa|up_5|NZ_CP012409.1_866727_867027_-,NA|126aa|up_4|NZ_CP012409.1_867164_867542_-,NA|230aa|up_2|NZ_CP012409.1_868178_868868_+,NA|39aa|down_2|NZ_CP012409.1_872651_872768_-	NA|292aa|up_9|NZ_CP012409.1_863252_864128_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|153aa|up_8|NZ_CP012409.1_864983_865442_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|NZ_CP012409.1_865443_866010_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|NZ_CP012409.1_866105_866648_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|NZ_CP012409.1_866727_867027_-	NA	NA|126aa|up_4|NZ_CP012409.1_867164_867542_-	NA	NA|148aa|up_3|NZ_CP012409.1_867608_868052_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|NZ_CP012409.1_868178_868868_+	NA	NA|163aa|up_1|NZ_CP012409.1_868966_869455_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|NZ_CP012409.1_869451_870672_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|NZ_CP012409.1_870880_871747_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_CP012409.1_871862_872507_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|NZ_CP012409.1_872651_872768_-	NA	NA|158aa|down_3|NZ_CP012409.1_872859_873333_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|NZ_CP012409.1_873332_874049_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|NZ_CP012409.1_874237_874597_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|NZ_CP012409.1_874742_876893_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|NZ_CP012409.1_877590_878235_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|NZ_CP012409.1_878595_879393_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|NZ_CP012409.1_879978_880986_-	pfam01384, PHO4, Phosphate transporter family
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	9	1569958-1570043	8	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	1569988-1570013|1569988-1570013|1569988-1570013|1569988-1570013	NZ_CP012409.1_2014288-2014263|NZ_CP012409.1_273428-273453|NZ_CP012409.1_2556824-2556799|NZ_CP012409.1_2700265-2700290	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|64aa|down_4|NZ_CP012409.1_1572620_1572812_-,NA|166aa|down_5|NZ_CP012409.1_1573268_1573766_+,NA|64aa|down_6|NZ_CP012409.1_1574372_1574564_-	NA|645aa|up_9|NZ_CP012409.1_1556796_1558731_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|371aa|up_8|NZ_CP012409.1_1558740_1559853_-	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein	NA|82aa|up_7|NZ_CP012409.1_1559849_1560095_-	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|378aa|up_6|NZ_CP012409.1_1560475_1561609_-	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|454aa|up_5|NZ_CP012409.1_1561886_1563248_-	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|46aa|up_4|NZ_CP012409.1_1563978_1564116_+	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|118aa|up_3|NZ_CP012409.1_1564236_1564590_+	PRK00499, rnpA, ribonuclease P; Reviewed	NA|626aa|up_2|NZ_CP012409.1_1566178_1568056_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|240aa|up_1|NZ_CP012409.1_1568055_1568775_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|280aa|up_0|NZ_CP012409.1_1568817_1569657_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|118aa|down_0|NZ_CP012409.1_1570266_1570620_+	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|125aa|down_1|NZ_CP012409.1_1570707_1571082_+	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|190aa|down_2|NZ_CP012409.1_1571332_1571902_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|67aa|down_3|NZ_CP012409.1_1572028_1572229_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|64aa|down_4|NZ_CP012409.1_1572620_1572812_-	NA	NA|166aa|down_5|NZ_CP012409.1_1573268_1573766_+	NA	NA|64aa|down_6|NZ_CP012409.1_1574372_1574564_-	NA	NA|627aa|down_7|NZ_CP012409.1_1574656_1576537_-	pfam02687, FtsX, FtsX-like permease family	NA|253aa|down_8|NZ_CP012409.1_1576526_1577285_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|171aa|down_9|NZ_CP012409.1_1577574_1578087_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	10	1602336-1602419	9	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	ACAGGCAATGCGAGTTGGGGTGTGG	25	1	1	1602361-1602394	NZ_CP012409.1_1315755-1315722	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|88aa|up_1|NZ_CP012409.1_1599169_1599433_+,NA	NA|205aa|up_9|NZ_CP012409.1_1592544_1593159_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP012409.1_1593151_1594402_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP012409.1_1594417_1595431_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP012409.1_1595399_1595978_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP012409.1_1595974_1596553_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP012409.1_1596545_1597250_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP012409.1_1597246_1598005_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP012409.1_1598001_1598634_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|88aa|up_1|NZ_CP012409.1_1599169_1599433_+	NA	NA|681aa|up_0|NZ_CP012409.1_1600154_1602197_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP012409.1_1602591_1603644_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP012409.1_1603630_1604503_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP012409.1_1604499_1604805_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP012409.1_1604768_1606007_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP012409.1_1606170_1606731_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP012409.1_1607578_1608241_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP012409.1_1608257_1608950_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP012409.1_1608946_1609714_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP012409.1_1609948_1610449_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP012409.1_1610451_1610928_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	11	1805039-1805172	2	PILER-CR	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|67aa|up_1|NZ_CP012409.1_1798617_1798818_+,NA|68aa|down_4|NZ_CP012409.1_1814629_1814833_+,NA|103aa|down_5|NZ_CP012409.1_1814939_1815248_-,NA|89aa|down_6|NZ_CP012409.1_1815391_1815658_-	NA|204aa|up_9|NZ_CP012409.1_1787020_1787632_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP012409.1_1788178_1789456_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|139aa|up_7|NZ_CP012409.1_1792327_1792744_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP012409.1_1792974_1793667_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP012409.1_1793833_1794598_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP012409.1_1794751_1795432_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP012409.1_1795456_1797010_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP012409.1_1797125_1798484_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP012409.1_1798617_1798818_+	NA	NA|1032aa|up_0|NZ_CP012409.1_1798952_1802048_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP012409.1_1805779_1806646_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP012409.1_1806856_1807600_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP012409.1_1807923_1808280_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|398aa|down_3|NZ_CP012409.1_1813425_1814619_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|68aa|down_4|NZ_CP012409.1_1814629_1814833_+	NA	NA|103aa|down_5|NZ_CP012409.1_1814939_1815248_-	NA	NA|89aa|down_6|NZ_CP012409.1_1815391_1815658_-	NA	NA|603aa|down_7|NZ_CP012409.1_1815941_1817750_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_8|NZ_CP012409.1_1817866_1818259_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_9|NZ_CP012409.1_1818260_1821122_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	12	1880874-1880959	10	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	1880904-1880929|1880904-1880929|1880904-1880929|1880904-1880929	NZ_CP012409.1_2014288-2014263|NZ_CP012409.1_273428-273453|NZ_CP012409.1_2556824-2556799|NZ_CP012409.1_2700265-2700290	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|220aa|up_4|NZ_CP012409.1_1877816_1878476_-,NA|36aa|up_1|NZ_CP012409.1_1880465_1880573_+,NA|56aa|up_0|NZ_CP012409.1_1880599_1880767_+,NA|56aa|down_1|NZ_CP012409.1_1885045_1885213_+	NA|693aa|up_9|NZ_CP012409.1_1870278_1872357_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|269aa|up_8|NZ_CP012409.1_1874188_1874995_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_7|NZ_CP012409.1_1875057_1875714_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_6|NZ_CP012409.1_1875826_1876300_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_5|NZ_CP012409.1_1876422_1877634_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_4|NZ_CP012409.1_1877816_1878476_-	NA	NA|381aa|up_3|NZ_CP012409.1_1878535_1879678_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_2|NZ_CP012409.1_1879945_1880332_+	pfam04138, GtrA, GtrA-like protein	NA|36aa|up_1|NZ_CP012409.1_1880465_1880573_+	NA	NA|56aa|up_0|NZ_CP012409.1_1880599_1880767_+	NA	NA|588aa|down_0|NZ_CP012409.1_1881295_1883059_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_1|NZ_CP012409.1_1885045_1885213_+	NA	NA|229aa|down_2|NZ_CP012409.1_1885267_1885954_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP012409.1_1885931_1887290_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP012409.1_1887291_1888299_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP012409.1_1888276_1889392_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP012409.1_1889402_1890095_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|326aa|down_7|NZ_CP012409.1_1890623_1891601_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_8|NZ_CP012409.1_1891602_1892550_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|down_9|NZ_CP012409.1_1893117_1894047_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	13	1909755-1909838	11	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	CCCGCCAACTTGCACATTATTGTAAGCTG	29	1	14	1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809|1909784-1909809	NZ_CP012409.1_273458-273433|NZ_CP012409.1_1426785-1426760|NZ_CP012409.1_673930-673955|NZ_CP012409.1_762827-762802|NZ_CP012409.1_1154970-1154945|NZ_CP012409.1_2014258-2014283|NZ_CP012409.1_2033456-2033481|NZ_CP012409.1_2700295-2700270|NZ_CP012409.1_123962-123937|NZ_CP012409.1_720535-720560|NZ_CP012409.1_1189167-1189192|NZ_CP012409.1_2401593-2401568|NZ_CP012409.1_2412212-2412187|NZ_CP012409.1_2734542-2734517	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|61aa|up_1|NZ_CP012409.1_1908484_1908667_+,NA	NA|244aa|up_9|NZ_CP012409.1_1901801_1902533_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|up_8|NZ_CP012409.1_1902629_1903880_-	pfam02388, FemAB, FemAB family	NA|121aa|up_7|NZ_CP012409.1_1904134_1904497_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|up_6|NZ_CP012409.1_1904515_1905115_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|84aa|up_5|NZ_CP012409.1_1905383_1905635_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|89aa|up_4|NZ_CP012409.1_1905634_1905901_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|517aa|up_3|NZ_CP012409.1_1906194_1907745_+	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|156aa|up_2|NZ_CP012409.1_1907930_1908398_+	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|61aa|up_1|NZ_CP012409.1_1908484_1908667_+	NA	NA|275aa|up_0|NZ_CP012409.1_1908869_1909694_+	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism]	NA|179aa|down_0|NZ_CP012409.1_1910158_1910695_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|down_1|NZ_CP012409.1_1910922_1911690_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|802aa|down_2|NZ_CP012409.1_1911717_1914123_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|105aa|down_3|NZ_CP012409.1_1914126_1914441_+	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|326aa|down_4|NZ_CP012409.1_1914431_1915409_+	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase	NA|1230aa|down_5|NZ_CP012409.1_1915717_1919407_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|520aa|down_6|NZ_CP012409.1_1919396_1920956_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|197aa|down_7|NZ_CP012409.1_1920933_1921524_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|226aa|down_8|NZ_CP012409.1_1921516_1922194_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|151aa|down_9|NZ_CP012409.1_1922213_1922666_+	pfam01590, GAF, GAF domain
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	14	2048694-2048822	3,12	PILER-CR,CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	CAATAATGTGCAAGTTGG,AAAGTCAGCTTACAATAATGTGCAAGTTGG	18,30	0	0	NA	NA	NA:NA	2,1	2	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|57aa|down_0|NZ_CP012409.1_2048957_2049128_-,NA|84aa|down_5|NZ_CP012409.1_2052268_2052520_-,NA|106aa|down_8|NZ_CP012409.1_2057644_2057962_-,NA|55aa|down_9|NZ_CP012409.1_2058207_2058372_-	NA|224aa|up_9|NZ_CP012409.1_2040926_2041598_+	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|202aa|up_8|NZ_CP012409.1_2041598_2042204_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_7|NZ_CP012409.1_2042372_2043377_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_6|NZ_CP012409.1_2043407_2043914_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_5|NZ_CP012409.1_2043915_2044410_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_4|NZ_CP012409.1_2044472_2045732_+	cd00887, MoeA, MoeA family	NA|149aa|up_3|NZ_CP012409.1_2046226_2046673_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP012409.1_2046678_2046912_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP012409.1_2046918_2047518_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP012409.1_2047537_2048560_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP012409.1_2048957_2049128_-	NA	NA|117aa|down_1|NZ_CP012409.1_2049253_2049604_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP012409.1_2049705_2050917_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP012409.1_2050909_2051350_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP012409.1_2051512_2052277_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP012409.1_2052268_2052520_-	NA	NA|422aa|down_6|NZ_CP012409.1_2052908_2054174_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP012409.1_2054290_2057458_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP012409.1_2057644_2057962_-	NA	NA|55aa|down_9|NZ_CP012409.1_2058207_2058372_-	NA
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	15	2179885-2179971	13	CRISPRCasFinder	no	csa3	DinG,DEDDh,cas3,WYL,csa3	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTTG	29	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|87aa|up_9|NZ_CP012409.1_2171131_2171392_-,NA|101aa|up_6|NZ_CP012409.1_2173778_2174081_-,NA|95aa|up_4|NZ_CP012409.1_2174565_2174850_-,NA|31aa|up_2|NZ_CP012409.1_2177172_2177265_-,NA|35aa|up_0|NZ_CP012409.1_2179376_2179481_+,NA|364aa|down_0|NZ_CP012409.1_2179987_2181079_-,NA|77aa|down_5|NZ_CP012409.1_2184868_2185099_+	NA|87aa|up_9|NZ_CP012409.1_2171131_2171392_-	NA	NA|352aa|up_8|NZ_CP012409.1_2171396_2172452_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|364aa|up_7|NZ_CP012409.1_2172512_2173604_-	pfam02486, Rep_trans, Replication initiation factor	NA|101aa|up_6|NZ_CP012409.1_2173778_2174081_-	NA	NA|107aa|up_5|NZ_CP012409.1_2174094_2174415_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|95aa|up_4|NZ_CP012409.1_2174565_2174850_-	NA	NA|286aa|up_3|NZ_CP012409.1_2175613_2176471_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP012409.1_2177172_2177265_-	NA	NA|379aa|up_1|NZ_CP012409.1_2177553_2178690_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP012409.1_2179376_2179481_+	NA	NA|364aa|down_0|NZ_CP012409.1_2179987_2181079_-	NA	NA|327aa|down_1|NZ_CP012409.1_2181344_2182325_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP012409.1_2182326_2182647_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP012409.1_2182798_2183464_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP012409.1_2183899_2184838_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP012409.1_2184868_2185099_+	NA	NA|458aa|down_6|NZ_CP012409.1_2185772_2187146_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP012409.1_2187603_2188017_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP012409.1_2188216_2188660_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP012409.1_2188780_2189491_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	16	2362254-2362334	14	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	CGGAAAGTCAGCTTACAACAATGTG	25	1	1	2362279-2362309	NZ_CP012409.1_2401611-2401641	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|87aa|up_5|NZ_CP012409.1_2356026_2356287_-,NA|60aa|up_4|NZ_CP012409.1_2356597_2356777_-,NA|33aa|up_1|NZ_CP012409.1_2361551_2361650_+,NA|59aa|up_0|NZ_CP012409.1_2361891_2362068_+,NA|175aa|down_6|NZ_CP012409.1_2366979_2367504_+	NA|252aa|up_9|NZ_CP012409.1_2351974_2352730_+	pfam05257, CHAP, CHAP domain	NA|164aa|up_8|NZ_CP012409.1_2352920_2353412_+	pfam02821, Staphylokinase, Staphylokinase/Streptokinase family	NA|150aa|up_7|NZ_CP012409.1_2354491_2354941_-	PRK13032, PRK13032, chemotaxis-inhibiting protein CHIPS; Reviewed	NA|117aa|up_6|NZ_CP012409.1_2355623_2355974_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|87aa|up_5|NZ_CP012409.1_2356026_2356287_-	NA	NA|60aa|up_4|NZ_CP012409.1_2356597_2356777_-	NA	NA|584aa|up_3|NZ_CP012409.1_2357734_2359486_+	pfam03642, MAP, MAP domain	NA|429aa|up_2|NZ_CP012409.1_2360065_2361352_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|33aa|up_1|NZ_CP012409.1_2361551_2361650_+	NA	NA|59aa|up_0|NZ_CP012409.1_2361891_2362068_+	NA	NA|127aa|down_0|NZ_CP012409.1_2362666_2363047_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|299aa|down_1|NZ_CP012409.1_2363043_2363940_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|227aa|down_2|NZ_CP012409.1_2363940_2364621_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|291aa|down_3|NZ_CP012409.1_2364617_2365490_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|247aa|down_4|NZ_CP012409.1_2365489_2366230_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|188aa|down_5|NZ_CP012409.1_2366295_2366859_-	pfam14595, Thioredoxin_9, Thioredoxin	NA|175aa|down_6|NZ_CP012409.1_2366979_2367504_+	NA	NA|186aa|down_7|NZ_CP012409.1_2367563_2368121_+	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|281aa|down_8|NZ_CP012409.1_2368117_2368960_+	pfam13349, DUF4097, Putative adhesin	NA|347aa|down_9|NZ_CP012409.1_2369016_2370057_-	COG4927, COG4927, Predicted choloylglycine hydrolase [General function prediction only]
GCF_000452385.2_ASM45238v2	NZ_CP012409	Staphylococcus aureus subsp. aureus Tager 104 chromosome, complete genome	17	2614585-2614664	15	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	2614609-2614640	NZ_CP012409.1_415068-415099	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|48aa|up_4|NZ_CP012409.1_2610044_2610188_+,NA	NA|165aa|up_9|NZ_CP012409.1_2605061_2605556_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP012409.1_2605678_2606626_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP012409.1_2606713_2607916_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP012409.1_2608161_2608662_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP012409.1_2608802_2609921_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|48aa|up_4|NZ_CP012409.1_2610044_2610188_+	NA	NA|352aa|up_3|NZ_CP012409.1_2610237_2611293_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP012409.1_2611467_2612157_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP012409.1_2612600_2613014_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP012409.1_2613218_2614517_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP012409.1_2614816_2615758_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP012409.1_2615778_2618976_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP012409.1_2619425_2620655_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP012409.1_2620849_2621707_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP012409.1_2621706_2622651_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP012409.1_2622919_2623888_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP012409.1_2623909_2625667_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP012409.1_2626013_2627375_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP012409.1_2627722_2628844_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP012409.1_2628892_2630161_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
