assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000448685.2_ASM44868v2	NZ_CP013216	Streptococcus salivarius strain HSISS4 chromosome, complete genome	1	944352-944453	1	CRISPRCasFinder	no		cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	Orphan	GTAGTTGAAGTTCCTGGTAAACCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	NA|72aa|up_4|NZ_CP013216.1_934231_934447_+,NA	NA|227aa|up_9|NZ_CP013216.1_931297_931978_+	PRK00023, cmk, (d)CMP kinase	NA|177aa|up_8|NZ_CP013216.1_932137_932668_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|67aa|up_7|NZ_CP013216.1_932706_932907_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|120aa|up_6|NZ_CP013216.1_932963_933323_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|158aa|up_5|NZ_CP013216.1_933366_933840_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|72aa|up_4|NZ_CP013216.1_934231_934447_+	NA	NA|62aa|up_3|NZ_CP013216.1_934518_934704_-	PRK02289, PRK02289, 4-oxalocrotonate tautomerase; Provisional	NA|469aa|up_2|NZ_CP013216.1_935065_936472_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|195aa|up_1|NZ_CP013216.1_936512_937097_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|1263aa|up_0|NZ_CP013216.1_937470_941259_+	pfam08363, GbpC, Glucan-binding protein C	NA|227aa|down_0|NZ_CP013216.1_944915_945596_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|404aa|down_1|NZ_CP013216.1_945715_946927_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|182aa|down_2|NZ_CP013216.1_946928_947474_+	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_3|NZ_CP013216.1_947492_948302_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|416aa|down_4|NZ_CP013216.1_948305_949553_+	cd01033, ClC_like, Putative ClC chloride channel	NA|238aa|down_5|NZ_CP013216.1_949549_950263_+	PRK08250, PRK08250, glutamine amidotransferase; Provisional	NA|237aa|down_6|NZ_CP013216.1_950566_951277_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|487aa|down_7|NZ_CP013216.1_951617_953078_+	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|244aa|down_8|NZ_CP013216.1_953078_953810_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|down_9|NZ_CP013216.1_953818_954511_+	TIGR01006, Capsular_polysaccharide_biosynthesis_protein_CapA, polysaccharide export protein, MPA1 family, Gram-positive type
GCF_000448685.2_ASM44868v2	NZ_CP013216	Streptococcus salivarius strain HSISS4 chromosome, complete genome	2	1063751-1064291	2	CRISPRCasFinder	no	csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2	cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	Type III-A,Type III-C,Type III-B,Type III-D	AGTTTTCGTCCCCTCTCGAGGTA	23	0	0	NA	NA	NA	7	7	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	NA,NA	NA|210aa|up_9|NZ_CP013216.1_1053114_1053744_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|232aa|up_8|NZ_CP013216.1_1053831_1054527_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	csm6|429aa|up_7|NZ_CP013216.1_1054727_1056014_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm6|387aa|up_6|NZ_CP013216.1_1056028_1057189_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|358aa|up_5|NZ_CP013216.1_1057185_1058259_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|300aa|up_4|NZ_CP013216.1_1058261_1059161_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|221aa|up_3|NZ_CP013216.1_1059162_1059825_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|127aa|up_2|NZ_CP013216.1_1059824_1060205_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|757aa|up_1|NZ_CP013216.1_1060208_1062479_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|244aa|up_0|NZ_CP013216.1_1062459_1063191_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas2|110aa|down_0|NZ_CP013216.1_1064405_1064735_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|319aa|down_1|NZ_CP013216.1_1065878_1066835_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|268aa|down_2|NZ_CP013216.1_1066844_1067648_-	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|183aa|down_3|NZ_CP013216.1_1067958_1068507_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|267aa|down_4|NZ_CP013216.1_1068640_1069441_-	pfam05857, TraX, TraX protein	NA|553aa|down_5|NZ_CP013216.1_1069959_1071618_+	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|515aa|down_6|NZ_CP013216.1_1071792_1073337_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|276aa|down_7|NZ_CP013216.1_1073606_1074434_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|233aa|down_8|NZ_CP013216.1_1074426_1075125_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|447aa|down_9|NZ_CP013216.1_1075206_1076547_+	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA
GCF_000448685.2_ASM44868v2	NZ_CP013216	Streptococcus salivarius strain HSISS4 chromosome, complete genome	3	1494539-1494651	3	CRISPRCasFinder	no		cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	Orphan	GATTCTTGTGTACCCTTGGCTTCCAGTTTGCC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	NA,NA|424aa|down_1|NZ_CP013216.1_1510035_1511307_-,NA|199aa|down_6|NZ_CP013216.1_1519973_1520570_-	NA|503aa|up_9|NZ_CP013216.1_1469923_1471432_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|792aa|up_8|NZ_CP013216.1_1471444_1473820_-	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed	NA|149aa|up_7|NZ_CP013216.1_1473812_1474259_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|513aa|up_6|NZ_CP013216.1_1474261_1475800_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|524aa|up_5|NZ_CP013216.1_1475786_1477358_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|409aa|up_4|NZ_CP013216.1_1477458_1478685_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|698aa|up_3|NZ_CP013216.1_1478779_1480873_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|1060aa|up_2|NZ_CP013216.1_1481257_1484437_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|403aa|up_1|NZ_CP013216.1_1484433_1485642_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1215aa|up_0|NZ_CP013216.1_1485825_1489470_-	pfam17965, MucBP_2, Mucin binding domain	NA|4322aa|down_0|NZ_CP013216.1_1496541_1509507_-	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|424aa|down_1|NZ_CP013216.1_1510035_1511307_-	NA	NA|508aa|down_2|NZ_CP013216.1_1511561_1513085_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|623aa|down_3|NZ_CP013216.1_1513180_1515049_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|582aa|down_4|NZ_CP013216.1_1515038_1516784_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|755aa|down_5|NZ_CP013216.1_1517647_1519912_+	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA|199aa|down_6|NZ_CP013216.1_1519973_1520570_-	NA	NA|510aa|down_7|NZ_CP013216.1_1520550_1522080_-	pfam11311, DUF3114, Protein of unknown function (DUF3114)	NA|187aa|down_8|NZ_CP013216.1_1522187_1522748_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|802aa|down_9|NZ_CP013216.1_1522959_1525365_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_000448685.2_ASM44868v2	NZ_CP013216	Streptococcus salivarius strain HSISS4 chromosome, complete genome	4	1496671-1496778	4	CRISPRCasFinder	no		cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	Orphan	TGGAGTTGGAGGAGTCGGTGGTGT	24	1	2	1496734-1496754|1496734-1496754	NZ_CP013216.1_542587-542567|NZ_CP013216.1_944315-944295	NA	2	2	Orphan	cas3,RT,DEDDh,csa3,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas2,DinG,WYL	NA,NA|424aa|down_0|NZ_CP013216.1_1510035_1511307_-,NA|199aa|down_5|NZ_CP013216.1_1519973_1520570_-	NA|792aa|up_9|NZ_CP013216.1_1471444_1473820_-	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed	NA|149aa|up_8|NZ_CP013216.1_1473812_1474259_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|513aa|up_7|NZ_CP013216.1_1474261_1475800_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|524aa|up_6|NZ_CP013216.1_1475786_1477358_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|409aa|up_5|NZ_CP013216.1_1477458_1478685_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|698aa|up_4|NZ_CP013216.1_1478779_1480873_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|1060aa|up_3|NZ_CP013216.1_1481257_1484437_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|403aa|up_2|NZ_CP013216.1_1484433_1485642_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1215aa|up_1|NZ_CP013216.1_1485825_1489470_-	pfam17965, MucBP_2, Mucin binding domain	NA|2052aa|up_0|NZ_CP013216.1_1489929_1496085_-	pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region	NA|424aa|down_0|NZ_CP013216.1_1510035_1511307_-	NA	NA|508aa|down_1|NZ_CP013216.1_1511561_1513085_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|623aa|down_2|NZ_CP013216.1_1513180_1515049_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|582aa|down_3|NZ_CP013216.1_1515038_1516784_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|755aa|down_4|NZ_CP013216.1_1517647_1519912_+	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA|199aa|down_5|NZ_CP013216.1_1519973_1520570_-	NA	NA|510aa|down_6|NZ_CP013216.1_1520550_1522080_-	pfam11311, DUF3114, Protein of unknown function (DUF3114)	NA|187aa|down_7|NZ_CP013216.1_1522187_1522748_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|802aa|down_8|NZ_CP013216.1_1522959_1525365_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|477aa|down_9|NZ_CP013216.1_1525690_1527121_-	PRK00654, glgA, glycogen synthase GlgA
