The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021905	Rhizobium etli bv. mimosae str. Mim1, complete genome	4284494	1544821	1554041	4284494		Escherichia_phage(25.0%)	9	NA	NA
WP_020920944.1|1544821_1546120_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.0	1.9e-97
WP_003547190.1|1546129_1546606_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_020920945.1|1546609_1547917_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	39.5	1.0e-34
WP_011424842.1|1547916_1548528_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.4	2.6e-17
WP_011424843.1|1548646_1549516_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.2	2.2e-94
WP_011424844.1|1549525_1550413_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D8EQE2	Escherichia_phage	35.4	1.9e-29
WP_020920946.1|1550416_1551472_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.2	9.8e-97
WP_020920947.1|1551478_1552057_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	44.3	4.6e-32
WP_041678608.1|1552046_1554041_-	hypothetical protein	NA	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	27.0	3.6e-07
>prophage 2
NC_021905	Rhizobium etli bv. mimosae str. Mim1, complete genome	4284494	1866885	1879977	4284494	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_020921129.1|1866885_1867899_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	1.6e-24
WP_041678867.1|1867917_1868775_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.2	4.7e-33
WP_020921130.1|1868771_1869476_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.0	2.1e-39
WP_011425113.1|1869658_1869850_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	6.8e-09
WP_020921131.1|1869900_1870521_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_020921132.1|1870517_1871345_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	45.7	1.2e-52
WP_011425116.1|1871441_1872725_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.7	7.0e-97
WP_020921133.1|1872729_1873503_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	3.1e-23
WP_011425118.1|1873499_1874153_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.7	5.2e-16
WP_011425119.1|1874292_1875882_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	30.0	5.0e-12
WP_020921134.1|1875968_1876841_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_020921135.1|1877044_1877392_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.0	9.2e-12
WP_020921136.1|1877436_1879977_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.6	1.4e-56
>prophage 3
NC_021905	Rhizobium etli bv. mimosae str. Mim1, complete genome	4284494	2100018	2110168	4284494		uncultured_Mediterranean_phage(83.33%)	8	NA	NA
WP_020921287.1|2100018_2102940_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.0	0.0e+00
WP_011425374.1|2103224_2103740_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	72.9	5.5e-45
WP_011425375.1|2103822_2104470_-	MarC family protein	NA	NA	NA	NA	NA
WP_020921288.1|2104707_2107515_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	1.8e-76
WP_041678644.1|2108099_2108447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020921291.1|2108536_2109031_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	2.3e-24
WP_020921292.1|2109057_2109630_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.7	5.7e-43
WP_011425381.1|2109658_2110168_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	9.3e-45
>prophage 4
NC_021905	Rhizobium etli bv. mimosae str. Mim1, complete genome	4284494	3050021	3110349	4284494	tRNA,holin,protease	Bacillus_phage(25.0%)	55	NA	NA
WP_020921907.1|3050021_3050744_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_011426270.1|3051171_3051483_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_020921909.1|3051805_3052909_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_020921910.1|3052924_3053998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020921911.1|3054190_3054682_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_011426274.1|3054678_3055146_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_020921912.1|3055164_3055707_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.8	2.3e-33
WP_020921913.1|3055821_3056706_-	cytochrome c1	NA	NA	NA	NA	NA
WP_011426277.1|3056731_3058012_-	cytochrome b	NA	NA	NA	NA	NA
WP_011426278.1|3058026_3058605_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_020921914.1|3058891_3059824_+	endonuclease/exonuclease/phosphatase	NA	NA	NA	NA	NA
WP_020921915.1|3059779_3061693_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.2	1.8e-27
WP_011426281.1|3061855_3062086_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_020921916.1|3062177_3064034_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.7	1.9e-34
WP_020921917.1|3064418_3064880_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_020921918.1|3065077_3066724_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_011426285.1|3066727_3066988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020921919.1|3067155_3068061_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_020921920.1|3068163_3068427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011426288.1|3068540_3068726_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_020921921.1|3068796_3070050_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	K4JS34	Caulobacter_phage	34.8	1.3e-44
WP_020921922.1|3070046_3070697_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_020921923.1|3070693_3071317_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_041678717.1|3071474_3072485_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_020921924.1|3072498_3073419_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_020921925.1|3073415_3076229_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_020921926.1|3076230_3078303_+	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_020921927.1|3078307_3078724_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_080655805.1|3078724_3079267_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_020921928.1|3079504_3080491_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_020921929.1|3080497_3080998_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_020921930.1|3081047_3081956_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_020921931.1|3082114_3082675_+	tetratricopeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011426302.1|3082859_3083369_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_020921932.1|3083370_3084210_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_020921933.1|3084557_3086276_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_041678718.1|3086613_3087813_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_011426306.1|3087993_3088578_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	38.4	3.3e-30
WP_020921935.1|3088809_3089571_+	DUF2076 domain-containing protein	NA	NA	NA	NA	NA
WP_011426308.1|3089703_3090168_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	48.8	1.5e-28
WP_011426309.1|3090167_3091082_-	CDF family cation efflux transporter EmfA	NA	NA	NA	NA	NA
WP_011426310.1|3091278_3091950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011426311.1|3091964_3092204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020921936.1|3092426_3094616_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_020921937.1|3094884_3097143_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_041678719.1|3097395_3098379_+	extensin	NA	NA	NA	NA	NA
WP_020921940.1|3098660_3100340_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_020921942.1|3100928_3102608_-|protease	Clp protease-like protein	protease	NA	NA	NA	NA
WP_020921943.1|3102916_3103642_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_020921945.1|3104169_3105300_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_020921946.1|3105438_3106512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020921947.1|3106584_3107187_-	thymidine kinase	NA	A0A193GZ25	Escherichia_phage	55.8	1.4e-52
WP_011426321.1|3107423_3108380_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_011426322.1|3108454_3109300_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_011426323.1|3109296_3110349_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	31.3	4.3e-20
>prophage 5
NC_021905	Rhizobium etli bv. mimosae str. Mim1, complete genome	4284494	3813405	3823433	4284494		Mycobacterium_phage(25.0%)	9	NA	NA
WP_020922354.1|3813405_3814116_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	47.3	1.9e-48
WP_020922355.1|3814115_3814472_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_020922356.1|3814468_3815197_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.9	3.1e-41
WP_020922357.1|3815202_3816426_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.3	1.2e-13
WP_020922358.1|3816525_3817500_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	75.1	1.2e-138
WP_041678763.1|3817695_3819900_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.5	2.5e-211
WP_011426927.1|3819878_3820283_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A249Y1D6	Staphylococcus_phage	33.1	2.1e-07
WP_020922360.1|3820299_3820515_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	50.0	3.6e-14
WP_020922361.1|3821186_3823433_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.9	7.3e-126
>prophage 1
NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	615363	51712	62988	615363	integrase,transposase	Bacillus_phage(16.67%)	11	49355:49370	60180:60195
49355:49370	attL	TTTTCCCAAATGCGCG	NA	NA	NA	NA
WP_020919007.1|51712_52951_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	21.8	5.8e-08
WP_020919008.1|52947_53919_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	26.2	6.2e-05
WP_020919009.1|53915_54932_+|integrase	site-specific integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	27.8	4.2e-12
WP_020923316.1|55599_55851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155249475.1|56192_56414_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
WP_080655845.1|56454_57009_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	47.8	1.3e-28
WP_051252128.1|57341_57689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155249456.1|59015_59165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020923317.1|59284_59551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041679105.1|59736_61302_+	proline dehydrogenase	NA	E3SLT3	Prochlorococcus_phage	33.2	1.5e-37
60180:60195	attR	CGCGCATTTGGGAAAA	NA	NA	NA	NA
WP_041679106.1|61545_62988_-|transposase	IS4 family transposase	transposase	Q9JMP3	Wolbachia_phage	34.3	1.8e-69
>prophage 1
NC_021910	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetNIM1c, complete sequence	269426	161327	223081	269426	transposase,integrase	Stx2-converting_phage(27.27%)	46	204409:204423	223470:223484
WP_080655832.1|161327_162980_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	45.5	6.9e-81
WP_041678995.1|164841_165021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041679031.1|166032_168150_-	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	26.0	1.8e-17
WP_041678996.1|168913_170215_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_020918964.1|170334_171744_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_020918965.1|171882_173286_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.8	1.0e-16
WP_041678995.1|174815_174995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051252109.1|176861_178505_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.5	3.4e-88
WP_040679045.1|178583_178931_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	55.1	4.4e-30
WP_041678997.1|178927_179269_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_020918968.1|179603_180695_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_080655833.1|180600_182496_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_020918970.1|182492_183602_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	1.3e-27
WP_020918971.1|184047_184596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020918972.1|184724_186308_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
WP_020918973.1|187185_188796_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020918974.1|188924_189677_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_020918975.1|189767_190640_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_020918978.1|191291_192038_-	inositol monophosphatase protein	NA	NA	NA	NA	NA
WP_020918979.1|192034_192970_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_020918980.1|192970_194680_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_020918981.1|194676_195675_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	8.0e-24
WP_155249453.1|195711_196782_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_020918983.1|196841_198044_+	ROK family protein	NA	NA	NA	NA	NA
WP_020918984.1|198169_199000_-	calcineurin-like phosphoesterase	NA	NA	NA	NA	NA
WP_020918985.1|199071_199806_+	HAD-IIA family hydrolase	NA	NA	NA	NA	NA
WP_041679039.1|199859_200693_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_080655834.1|200795_202112_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_080655835.1|201934_202972_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_080655836.1|202941_203796_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_020918990.1|203797_205051_+	calcineurin-like phosphoesterase	NA	NA	NA	NA	NA
204409:204423	attL	GCTCAAGGAAGGTCT	NA	NA	NA	NA
WP_020918991.1|205071_206121_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	34.0	2.9e-24
WP_020918992.1|206278_207568_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_020918993.1|207567_207915_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_080655837.1|208085_208346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020918995.1|208451_210095_+	MFS transporter	NA	NA	NA	NA	NA
WP_020918996.1|210107_210440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020918997.1|210445_212086_+	MFS transporter	NA	NA	NA	NA	NA
WP_020918998.1|212120_212321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020918999.1|212490_213087_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_020919000.1|213125_213599_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_020919002.1|214296_215349_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_020919003.1|215410_216010_+	DUF1419 domain-containing protein	NA	NA	NA	NA	NA
WP_020919007.1|219861_221100_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	21.8	5.8e-08
WP_020919008.1|221096_222068_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	26.2	6.2e-05
WP_020919009.1|222064_223081_+|integrase	site-specific integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	27.8	4.2e-12
223470:223484	attR	GCTCAAGGAAGGTCT	NA	NA	NA	NA
