The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021844	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189, complete sequence	4730612	1763884	1773055	4730612	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569168.1|1763884_1764832_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
WP_000824854.1|1764815_1765547_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1765527_1765635_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1765694_1766426_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1766648_1768334_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1768330_1769050_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1769096_1769564_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1769620_1770151_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1770322_1770781_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195334.1|1771021_1773055_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NC_021844	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189, complete sequence	4730612	1943098	1950366	4730612		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1943098_1943518_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_017465541.1|1943520_1944789_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000208509.1|1945243_1945456_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|1945466_1945655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839256.1|1945914_1947126_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	56.5	3.4e-109
WP_020839257.1|1947775_1948087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017441839.1|1948166_1948862_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_001157322.1|1948935_1950366_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 3
NC_021844	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189, complete sequence	4730612	2860063	2961006	4730612	transposase,tail,terminase,protease,portal,tRNA,lysis,holin,capsid,head	Enterobacteria_phage(33.33%)	97	NA	NA
WP_020839432.1|2860063_2860744_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	3.4e-82
WP_000374046.1|2861362_2862022_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2862108_2862438_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2862434_2862716_-	acylphosphatase	NA	NA	NA	NA	NA
WP_017465795.1|2862764_2863544_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000859416.1|2863569_2864118_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140480.1|2864332_2865544_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2865601_2865919_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|2865963_2866377_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2866550_2867213_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2867307_2867766_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_001261222.1|2869981_2870428_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950869.1|2870446_2872600_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202375.1|2872586_2873192_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2873408_2873918_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_023193195.1|2874274_2875327_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|2875398_2875851_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156448.1|2876036_2877797_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2877865_2878384_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|2878483_2878651_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2878906_2879470_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2879466_2881107_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333153.1|2881111_2882365_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|2882379_2884287_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_020839434.1|2884299_2886408_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000224075.1|2886506_2887616_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2887612_2888155_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291723.1|2888320_2889331_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_020839435.1|2889538_2892151_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
WP_000497440.1|2892577_2892784_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_001536069.1|2893259_2894060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010835411.1|2894627_2896118_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
WP_000143168.1|2896947_2897529_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
WP_023193196.1|2897528_2900024_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
WP_000178849.1|2900077_2900320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514902.1|2900358_2903721_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
WP_001750110.1|2903782_2904430_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
WP_000662738.1|2904327_2905065_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
WP_001152686.1|2905071_2905770_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
WP_000447370.1|2905779_2906109_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
WP_000372075.1|2906111_2909207_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
WP_010989052.1|2909178_2909517_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2909513_2909909_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2909959_2910706_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2910713_2911115_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000677089.1|2911111_2911690_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000817265.1|2911798_2912929_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
WP_000083292.1|2912961_2913345_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
WP_000201486.1|2913355_2913715_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522566.1|2913772_2914801_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2914855_2915203_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189495.1|2915215_2916712_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	3.3e-98
WP_000831820.1|2916701_2918282_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
WP_000201416.1|2918278_2918482_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	70.8	2.1e-16
WP_000623086.1|2918465_2920397_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.4	2.0e-257
WP_001102153.1|2920368_2920914_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669693.1|2921199_2921601_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001533543.1|2921836_2922289_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000984587.1|2922306_2922759_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
WP_001574216.1|2922742_2923072_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110788.1|2923347_2924034_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM2	Phage_Gifsy-1	98.7	5.1e-131
WP_000798706.1|2924394_2924844_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|2924979_2925105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839436.1|2925503_2926301_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|2926290_2926437_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_000784707.1|2926433_2926661_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	76.8	6.6e-19
WP_000940758.1|2926657_2927257_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	6.1e-96
WP_000911591.1|2927320_2927569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100148602.1|2927845_2928226_-	T3SS effector NleG family protein	NA	B6DZB9	Enterobacteria_phage	51.5	7.5e-23
WP_000089413.1|2928766_2929162_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
WP_000788952.1|2929179_2929932_-	ATP-binding protein	NA	A0A088CBP4	Shigella_phage	77.0	1.7e-103
WP_020839439.1|2929938_2930814_-	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.5	1.2e-31
WP_001669257.1|2930858_2931353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033909.1|2931339_2931594_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
WP_001224472.1|2931690_2932116_+	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
WP_024135615.1|2932559_2932739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613375.1|2933169_2933454_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
WP_000799631.1|2933528_2933864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000023724.1|2933993_2937173_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	68.2	0.0e+00
WP_077906096.1|2937135_2938293_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	98.7	6.7e-216
WP_001237031.1|2938335_2938575_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_000065276.1|2938615_2938864_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262314.1|2938908_2940201_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.5	1.3e-252
WP_000191404.1|2940395_2941598_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_020839440.1|2941678_2943112_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000544857.1|2943357_2944572_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000762343.1|2944889_2945351_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000117867.1|2945551_2946952_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_020839441.1|2947557_2948649_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.5	2.8e-99
WP_000462653.1|2948833_2950024_+	aspartate transaminase	NA	NA	NA	NA	NA
WP_001109471.1|2950085_2950733_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000357052.1|2950760_2951309_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_020839442.1|2951568_2953392_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_017440920.1|2953736_2958203_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000060025.1|2958202_2958907_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_001288828.1|2958887_2960210_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_001154028.1|2960202_2961006_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 4
NC_021844	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189, complete sequence	4730612	4092159	4102833	4730612	integrase	Enterobacteria_phage(60.0%)	13	4097729:4097745	4106397:4106413
WP_020839650.1|4092159_4094493_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	84.3	0.0e+00
WP_000743150.1|4094507_4094828_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001604623.1|4094824_4095052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839651.1|4095048_4095600_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	71.3	1.1e-35
WP_000556587.1|4095596_4095863_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
WP_020839652.1|4096400_4097138_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.7	3.1e-81
WP_000984205.1|4097134_4097380_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	77.8	1.6e-31
WP_020839654.1|4097396_4097963_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	2.6e-56
4097729:4097745	attL	GCCCGCGATGATAAAAA	NA	NA	NA	NA
WP_020839655.1|4098182_4098746_-	type II restriction endonuclease PvuII	NA	A0A1B0UXL9	Roseobacter_phage	42.9	5.5e-30
WP_010376679.1|4098742_4098979_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000970946.1|4099034_4100030_+	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
WP_020839656.1|4100083_4101343_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
WP_000152566.1|4101813_4102833_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.7e-42
4106397:4106413	attR	TTTTTATCATCGCGGGC	NA	NA	NA	NA
>prophage 1
NC_021817	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 plasmid unnamed, complete sequence	78193	47490	59182	78193	transposase,integrase	Rhodococcus_phage(12.5%)	12	41296:41309	59216:59229
41296:41309	attL	TCATGGTTTTTCCC	NA	NA	NA	NA
WP_020833575.1|47490_47997_-	antirestriction protein ArdA	NA	A0A1I9S7Y0	Rhodococcus_phage	28.9	1.1e-08
WP_020833576.1|48402_49182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833577.1|49236_49656_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_020833578.1|49666_49888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833579.1|49887_50565_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.5e-29
WP_020833580.1|50924_51596_+	SOS response-associated peptidase family protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	8.2e-81
WP_020833581.1|52198_53473_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	1.3e-156
WP_020833582.1|53554_54529_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	8.8e-84
WP_000427674.1|54528_55734_-	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.6	1.4e-163
WP_001749329.1|56422_56677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000728920.1|57307_58249_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.0	1.4e-73
WP_020833584.1|58399_59182_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	90.2	1.7e-50
59216:59229	attR	TCATGGTTTTTCCC	NA	NA	NA	NA
