assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000439295.2_ASM43929v2	NC_021882	Helicobacter pylori UM298, complete sequence	1	463103-463200	1	CRISPRCasFinder	no		cas3,DEDDh,cas14j	Orphan	CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGC	35	1	1	463138-463165	NC_021882.2_463012-463039	NA	1	1	Orphan	cas3,DEDDh,cas14j	NA|99aa|up_4|NC_021882.2_455164_455461_+,NA|89aa|down_8|NC_021882.2_475278_475545_-,NA|92aa|down_9|NC_021882.2_475545_475821_-	NA|306aa|up_9|NC_021882.2_449809_450727_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|621aa|up_8|NC_021882.2_450986_452849_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_7|NC_021882.2_452879_453455_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NC_021882.2_453454_454285_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NC_021882.2_454504_455143_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NC_021882.2_455164_455461_+	NA	NA|628aa|up_3|NC_021882.2_455487_457371_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NC_021882.2_457433_458978_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NC_021882.2_459144_461355_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|309aa|up_0|NC_021882.2_461347_462274_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|813aa|down_0|NC_021882.2_463803_466242_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|613aa|down_1|NC_021882.2_466597_468436_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_2|NC_021882.2_468432_469044_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_3|NC_021882.2_469024_469219_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_4|NC_021882.2_469313_469664_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_5|NC_021882.2_469863_470724_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|544aa|down_6|NC_021882.2_471228_472860_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]	NA|808aa|down_7|NC_021882.2_472862_475286_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|89aa|down_8|NC_021882.2_475278_475545_-	NA	NA|92aa|down_9|NC_021882.2_475545_475821_-	NA
GCF_000439295.2_ASM43929v2	NC_021882	Helicobacter pylori UM298, complete sequence	2	905629-905727	2	CRISPRCasFinder	no		cas3,DEDDh,cas14j	Orphan	AAGTTTTTATTTTTGGGAGGGTTTGAT	27	1	3	905656-905700|905656-905700|905656-905700	NC_021882.2_577394-577438|NC_021882.2_905579-905623|NC_021882.2_1242725-1242769	NA	1	1	Orphan	cas3,DEDDh,cas14j	NA,NA|154aa|down_8|NC_021882.2_915449_915911_+	NA|327aa|up_9|NC_021882.2_893081_894062_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|349aa|up_8|NC_021882.2_895845_896892_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|201aa|up_7|NC_021882.2_896900_897503_+	smart00287, SH3b, Bacterial SH3 domain homologues	NA|264aa|up_6|NC_021882.2_897510_898302_+	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|645aa|up_5|NC_021882.2_898301_900236_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|341aa|up_4|NC_021882.2_900225_901248_+	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated	NA|147aa|up_3|NC_021882.2_901390_901831_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|182aa|up_2|NC_021882.2_901840_902386_+	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|86aa|up_1|NC_021882.2_902408_902666_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|684aa|up_0|NC_021882.2_903442_905494_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|77aa|down_0|NC_021882.2_906064_906295_-	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|848aa|down_1|NC_021882.2_906415_908959_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|191aa|down_2|NC_021882.2_908960_909533_+	PRK04056, PRK04056, septum formation inhibitor Maf	NA|335aa|down_3|NC_021882.2_909986_910991_-	PRK13287, amiF, formamidase; Provisional	NA|376aa|down_4|NC_021882.2_911157_912285_-	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|184aa|down_5|NC_021882.2_912284_912836_-	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_6|NC_021882.2_912914_914162_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|299aa|down_7|NC_021882.2_914165_915062_-	pfam00892, EamA, EamA-like transporter family	NA|154aa|down_8|NC_021882.2_915449_915911_+	NA	NA|381aa|down_9|NC_021882.2_915935_917078_-	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase
GCF_000439295.2_ASM43929v2	NC_021882	Helicobacter pylori UM298, complete sequence	3	1242775-1242873	3	CRISPRCasFinder	no		cas3,DEDDh,cas14j	Orphan	AAGTTTTTATTTTTGGGAGGGTTTGAT	27	1	3	1242802-1242846|1242802-1242846|1242802-1242846	NC_021882.2_577394-577438|NC_021882.2_905579-905623|NC_021882.2_1242725-1242769	NA	1	1	Orphan	cas3,DEDDh,cas14j	NA,NA|126aa|down_0|NC_021882.2_1243163_1243541_+,NA|615aa|down_9|NC_021882.2_1254353_1256198_+	NA|606aa|up_9|NC_021882.2_1229346_1231164_-	PRK05841, flgE, flagellar hook protein FlgE; Validated	NA|317aa|up_8|NC_021882.2_1231160_1232111_-	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|527aa|up_7|NC_021882.2_1232161_1233742_-	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|522aa|up_6|NC_021882.2_1233975_1235541_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|384aa|up_5|NC_021882.2_1235558_1236710_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|100aa|up_4|NC_021882.2_1236775_1237075_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|243aa|up_3|NC_021882.2_1237316_1238045_+	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|79aa|up_2|NC_021882.2_1238044_1238281_+	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|371aa|up_1|NC_021882.2_1238308_1239421_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|742aa|up_0|NC_021882.2_1240414_1242640_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|126aa|down_0|NC_021882.2_1243163_1243541_+	NA	NA|89aa|down_1|NC_021882.2_1243521_1243788_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|175aa|down_2|NC_021882.2_1243892_1244417_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|283aa|down_3|NC_021882.2_1244557_1245406_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|327aa|down_4|NC_021882.2_1245398_1246379_+	pfam01032, FecCD, FecCD transport family	NA|256aa|down_5|NC_021882.2_1246378_1247146_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|1324aa|down_6|NC_021882.2_1247207_1251179_-	pfam02691, VacA, Vacuolating cyotoxin	NA|466aa|down_7|NC_021882.2_1251402_1252800_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|487aa|down_8|NC_021882.2_1252800_1254261_-	pfam03023, MVIN, MviN-like protein	NA|615aa|down_9|NC_021882.2_1254353_1256198_+	NA
