assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000439255.1_ASM43925v1	NC_021870	Salmonella bongori N268-08, complete sequence	1	2892013-2892099	1	CRISPRCasFinder	no		DEDDh,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ATCGATTGTCTTCCGGCTATTATCATGCAC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|86aa|up_1|NC_021870.1_2890416_2890674_-,NA	NA|102aa|up_9|NC_021870.1_2882719_2883025_-	PRK15325, PRK15325, type III secretion system inner rod protein PrgJ	NA|84aa|up_8|NC_021870.1_2883043_2883295_-	PRK15326, PRK15326, type III secretion system needle complex protein	NA|393aa|up_7|NC_021870.1_2883319_2884498_-	PRK15327, PRK15327, PrgH/EprH family type III secretion inner membrane ring protein	NA|310aa|up_6|NC_021870.1_2884814_2885744_+	PRK15185, PRK15185, transcriptional regulator HilD; Provisional	NA|554aa|up_5|NC_021870.1_2886859_2888521_+	PRK12370, PRK12370, HilA/EilA family virulence transcriptional regulator	NA|161aa|up_4|NC_021870.1_2888538_2889021_+	PRK15328, PRK15328, type III secretion system invasion protein IagB	NA|292aa|up_3|NC_021870.1_2889079_2889955_-	PRK15375, PRK15375, type III secretion system effector GTPase-activating protein SptP	NA|131aa|up_2|NC_021870.1_2889989_2890382_-	PRK15329, PRK15329, chaperone SicP	NA|86aa|up_1|NC_021870.1_2890416_2890674_-	NA	NA|83aa|up_0|NC_021870.1_2890714_2890963_-	PRK08172, PRK08172, acyl carrier protein	NA|341aa|down_0|NC_021870.1_2893113_2894136_-	PRK15330, PRK15330, type III secretion system needle tip protein SipD	NA|410aa|down_1|NC_021870.1_2894206_2895436_-	PRK15373, PRK15373, IpaC/SipC family type III secretion system needle tip complex protein	NA|594aa|down_2|NC_021870.1_2895463_2897245_-	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB	NA|166aa|down_3|NC_021870.1_2897247_2897745_-	PRK15331, PRK15331, type III secretion system translocator chaperone SicA	NA|357aa|down_4|NC_021870.1_2897882_2898953_-	PRK08156, PRK08156, EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA|264aa|down_5|NC_021870.1_2898939_2899731_-	PRK15332, PRK15332, SpaR/YscT/HrcT type III secretion system export apparatus protein	NA|87aa|down_6|NC_021870.1_2899734_2899995_-	PRK15333, PRK15333, EscS/YscS/HrcS family type III secretion system export apparatus protein	NA|225aa|down_7|NC_021870.1_2900020_2900695_-	PRK12796, spaP, EscR/YscR/HrcR family type III secretion system export apparatus protein	NA|304aa|down_8|NC_021870.1_2900684_2901596_-	PRK08158, PRK08158, YscQ/HrcQ family type III secretion apparatus protein	NA|334aa|down_9|NC_021870.1_2901595_2902597_-	PRK15334, PRK15334, type III secretion system protein SpaN
GCF_000439255.1_ASM43925v1	NC_021870	Salmonella bongori N268-08, complete sequence	2	2938495-2939134	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,28,28	6	6	2938951-2938982|2939012-2939044|2939074-2939105|2938951-2938983|2939012-2939045|2939074-2939106	NC_021870.1_4522886-4522917|NC_021870.1_4538032-4538064|NC_021870.1_4464219-4464250|NC_021870.1_4522886-4522918|NC_021870.1_4538032-4538065|NC_021870.1_4464219-4464251	I-E:I-E:I-E	10,10,9	10	TypeI-E	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NC_021870.1_2930226_2930988_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_021870.1_2930968_2932018_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_021870.1_2932014_2932494_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_021870.1_2932493_2933204_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_021870.1_2933222_2933534_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_021870.1_2933724_2934048_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_021870.1_2934098_2934704_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NC_021870.1_2934690_2936130_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_021870.1_2936139_2937048_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|351aa|up_0|NC_021870.1_2937300_2938353_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_021870.1_2939230_2939524_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_021870.1_2939523_2940444_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_021870.1_2940440_2941091_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|249aa|down_3|NC_021870.1_2941072_2941819_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_021870.1_2941829_2942885_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|down_5|NC_021870.1_2942898_2943453_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|down_6|NC_021870.1_2943449_2945009_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NC_021870.1_2945020_2947684_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NC_021870.1_2948120_2949074_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NC_021870.1_2949159_2949894_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000439255.1_ASM43925v1	NC_021870	Salmonella bongori N268-08, complete sequence	3	2955128-2956010	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	2	2	2955950-2955981|2955952-2955984	NC_021870.1_4524535-4524504|NC_021870.1_4524535-4524503	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,DinG,cas14j,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	cas7|352aa|up_9|NC_021870.1_2941829_2942885_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|up_8|NC_021870.1_2942898_2943453_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|up_7|NC_021870.1_2943449_2945009_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NC_021870.1_2945020_2947684_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NC_021870.1_2948120_2949074_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NC_021870.1_2949159_2949894_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NC_021870.1_2949977_2951690_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NC_021870.1_2951689_2953489_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NC_021870.1_2953795_2954158_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NC_021870.1_2954238_2955036_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NC_021870.1_2956299_2956971_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NC_021870.1_2957471_2958770_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NC_021870.1_2958852_2960490_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NC_021870.1_2960717_2961509_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|NC_021870.1_2961626_2963861_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_5|NC_021870.1_2963912_2965208_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_6|NC_021870.1_2965265_2968022_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_7|NC_021870.1_2968151_2969294_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|447aa|down_8|NC_021870.1_2969372_2970713_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_9|NC_021870.1_2970733_2972074_-	TIGR03247, glucar-dehydr, glucarate dehydratase
