assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000438685.2_ASM43868v2	NC_021826	Listeria monocytogenes, complete sequence	1	1643295-1645973	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	Type II-B,Type II-A,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	40,40,39	40	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	NA|121aa|up_0|NC_021826.1_1642406_1642769_-,NA|160aa|down_4|NC_021826.1_1652472_1652952_-	NA|159aa|up_9|NC_021826.1_1625015_1625492_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NC_021826.1_1625491_1628479_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NC_021826.1_1628976_1629819_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NC_021826.1_1629868_1631350_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NC_021826.1_1631450_1632338_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NC_021826.1_1638128_1639157_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NC_021826.1_1639425_1640952_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NC_021826.1_1640989_1641841_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NC_021826.1_1641862_1642285_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NC_021826.1_1642406_1642769_-	NA	csn2|221aa|down_0|NC_021826.1_1646101_1646764_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_021826.1_1646753_1647095_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NC_021826.1_1647091_1647958_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NC_021826.1_1647958_1651963_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NC_021826.1_1652472_1652952_-	NA	NA|131aa|down_5|NC_021826.1_1653175_1653568_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NC_021826.1_1653589_1654027_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NC_021826.1_1654221_1654968_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NC_021826.1_1654973_1655771_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NC_021826.1_1655773_1656640_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_000438685.2_ASM43868v2	NC_021826	Listeria monocytogenes, complete sequence	2	2170560-2170714	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	Unclear	TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	50	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	NA,NA	NA|231aa|up_9|NC_021826.1_2157802_2158495_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NC_021826.1_2158491_2159700_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NC_021826.1_2160383_2160692_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NC_021826.1_2160810_2161119_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NC_021826.1_2161505_2162879_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NC_021826.1_2162929_2163886_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NC_021826.1_2163929_2164643_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NC_021826.1_2164915_2165869_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NC_021826.1_2166111_2167701_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NC_021826.1_2168035_2169568_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NC_021826.1_2171722_2172592_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NC_021826.1_2172663_2172987_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NC_021826.1_2173119_2173581_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NC_021826.1_2173633_2173966_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|240aa|down_4|NC_021826.1_2174032_2174752_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NC_021826.1_2174784_2175726_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NC_021826.1_2176019_2176643_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NC_021826.1_2176732_2177317_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NC_021826.1_2177423_2177984_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NC_021826.1_2178097_2181637_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_000438685.2_ASM43868v2	NC_021826	Listeria monocytogenes, complete sequence	3	2463104-2463688	2	CRT	no	RT	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	NA,NA|158aa|down_1|NC_021826.1_2466473_2466947_+,NA|162aa|down_2|NC_021826.1_2466966_2467452_+,NA|89aa|down_4|NC_021826.1_2467860_2468127_+	NA|252aa|up_9|NC_021826.1_2446851_2447607_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NC_021826.1_2447723_2449883_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NC_021826.1_2449879_2451028_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NC_021826.1_2451032_2451980_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NC_021826.1_2452135_2453731_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NC_021826.1_2453864_2455148_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NC_021826.1_2455148_2456249_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NC_021826.1_2456241_2457792_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NC_021826.1_2458427_2459966_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_0|NC_021826.1_2460229_2462311_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|586aa|down_0|NC_021826.1_2464650_2466408_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_1|NC_021826.1_2466473_2466947_+	NA	NA|162aa|down_2|NC_021826.1_2466966_2467452_+	NA	NA|102aa|down_3|NC_021826.1_2467479_2467785_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_4|NC_021826.1_2467860_2468127_+	NA	NA|321aa|down_5|NC_021826.1_2468206_2469169_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|276aa|down_6|NC_021826.1_2469930_2470758_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_7|NC_021826.1_2470785_2471145_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_8|NC_021826.1_2471470_2472031_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_9|NC_021826.1_2472140_2473841_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]
GCF_000438685.2_ASM43868v2	NC_021826	Listeria monocytogenes, complete sequence	4	2517049-2518377	2,3,3,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas2	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAANNNCTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,32,29	1	1	2517144-2517179	NC_021826.1_1471523-1471488	I-A:I-A:I-A:I-A	17,20,20,17	20	Unclear	cas3,DEDDh,DinG,WYL,csa3,csn2,cas2,cas1,cas9,casR,RT,cas6,cas8b2,cas7,cas5	NA,NA|148aa|down_5|NC_021826.1_2523924_2524368_+,NA|492aa|down_8|NC_021826.1_2527184_2528660_+	NA|610aa|up_9|NC_021826.1_2504840_2506670_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NC_021826.1_2506770_2507202_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NC_021826.1_2507248_2508679_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NC_021826.1_2508799_2509615_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NC_021826.1_2509967_2510690_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NC_021826.1_2510705_2512394_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NC_021826.1_2512383_2513253_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NC_021826.1_2513230_2514013_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|730aa|up_1|NC_021826.1_2514080_2516270_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NC_021826.1_2516572_2516851_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_021826.1_2518449_2518818_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NC_021826.1_2518963_2520379_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NC_021826.1_2520510_2521515_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NC_021826.1_2521547_2522864_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NC_021826.1_2523065_2523818_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NC_021826.1_2523924_2524368_+	NA	NA|554aa|down_6|NC_021826.1_2524413_2526075_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|247aa|down_7|NC_021826.1_2526214_2526955_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_8|NC_021826.1_2527184_2528660_+	NA	NA|499aa|down_9|NC_021826.1_2528652_2530149_+	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]
