assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000438645.1_ASM43864v1	NC_021837	Listeria monocytogenes, complete sequence	1	10726-11203	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		casR,WYL,cas3,DinG,csa3,cas9,cas1,cas2,csn2,DEDDh	Orphan	ATTTACATTTCACAATAAGTAACTAAAA,ATTTACATTTCACAATAAGTAACTAAAA,ATTTACATTTCACAATAAGTAACTAAAAC	28,28,29	4	4	10883-10918|10755-10789|10819-10854|10884-10918	NC_021837.1_2208511-2208546|NC_021837.1_1108217-1108251|NC_021837.1_2228264-2228299|NC_021837.1_2208512-2208546	I-A:I-A:I-A	7,7,7	7	Orphan	casR,WYL,cas3,DinG,csa3,cas9,cas1,cas2,csn2,DEDDh	NA|193aa|up_0|NC_021837.1_9755_10334_-,NA|133aa|down_5|NC_021837.1_15814_16213_-	NA|472aa|up_9|NC_021837.1_746_2162_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|123aa|up_8|NC_021837.1_2308_2677_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|272aa|up_7|NC_021837.1_2957_3773_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|up_6|NC_021837.1_3893_5324_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|up_5|NC_021837.1_5370_5802_-	pfam00582, Usp, Universal stress protein family	NA|612aa|up_4|NC_021837.1_5902_7738_-	NF033186, internalin_K, class 1 internalin InlK	NA|153aa|up_3|NC_021837.1_8119_8578_+	pfam12802, MarR_2, MarR family	NA|120aa|up_2|NC_021837.1_8584_8944_+	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|227aa|up_1|NC_021837.1_8968_9649_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|193aa|up_0|NC_021837.1_9755_10334_-	NA	NA|312aa|down_0|NC_021837.1_11440_12376_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|424aa|down_1|NC_021837.1_12515_13787_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|98aa|down_2|NC_021837.1_13801_14095_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|349aa|down_3|NC_021837.1_14110_15157_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|217aa|down_4|NC_021837.1_15153_15804_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|133aa|down_5|NC_021837.1_15814_16213_-	NA	NA|156aa|down_6|NC_021837.1_16229_16697_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|201aa|down_7|NC_021837.1_16724_17327_-	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|687aa|down_8|NC_021837.1_17330_19391_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|217aa|down_9|NC_021837.1_19499_20150_-	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]
GCF_000438645.1_ASM43864v1	NC_021837	Listeria monocytogenes, complete sequence	2	687896-688006	2	CRISPRCasFinder	no		casR,WYL,cas3,DinG,csa3,cas9,cas1,cas2,csn2,DEDDh	Orphan	TTTTGAAAGTTCTGGGAAGGATTAAATCATCGCT	34	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DinG,csa3,cas9,cas1,cas2,csn2,DEDDh	NA|214aa|up_5|NC_021837.1_683594_684236_+,NA|52aa|up_4|NC_021837.1_684807_684963_-,NA|74aa|up_2|NC_021837.1_686904_687126_+,NA	NA|580aa|up_9|NC_021837.1_677457_679197_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_8|NC_021837.1_679338_680286_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|313aa|up_7|NC_021837.1_680328_681267_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|505aa|up_6|NC_021837.1_681382_682897_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|214aa|up_5|NC_021837.1_683594_684236_+	NA	NA|52aa|up_4|NC_021837.1_684807_684963_-	NA	NA|455aa|up_3|NC_021837.1_685405_686770_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|74aa|up_2|NC_021837.1_686904_687126_+	NA	NA|61aa|up_1|NC_021837.1_687128_687311_+	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|155aa|up_0|NC_021837.1_687328_687793_+	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|580aa|down_0|NC_021837.1_688119_689859_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|106aa|down_1|NC_021837.1_689888_690206_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_2|NC_021837.1_690314_690911_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|82aa|down_3|NC_021837.1_690925_691171_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|281aa|down_4|NC_021837.1_691216_692059_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|280aa|down_5|NC_021837.1_692179_693019_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|284aa|down_6|NC_021837.1_693137_693989_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|125aa|down_7|NC_021837.1_694094_694469_-	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|199aa|down_8|NC_021837.1_694472_695069_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|330aa|down_9|NC_021837.1_695090_696080_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional
GCF_000438645.1_ASM43864v1	NC_021837	Listeria monocytogenes, complete sequence	3	790610-792163	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	casR,WYL,cas3,DinG,csa3,cas9,cas1,cas2,csn2,DEDDh	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC,GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	23,23,15	23	TypeII-A,TypeII-C,TypeII-B	casR,WYL,cas3,DinG,csa3,cas9,cas1,cas2,csn2,DEDDh	NA|160aa|up_4|NC_021837.1_783630_784110_+,NA|121aa|down_0|NC_021837.1_792688_793051_+	NA|289aa|up_9|NC_021837.1_779981_780848_+	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|266aa|up_8|NC_021837.1_780850_781648_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|249aa|up_7|NC_021837.1_781653_782400_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_6|NC_021837.1_782594_783032_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_5|NC_021837.1_783053_783446_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|160aa|up_4|NC_021837.1_783630_784110_+	NA	cas9|1335aa|up_3|NC_021837.1_784619_788624_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NC_021837.1_788624_789491_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NC_021837.1_789487_789829_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NC_021837.1_789818_790481_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|121aa|down_0|NC_021837.1_792688_793051_+	NA	NA|141aa|down_1|NC_021837.1_793172_793595_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|284aa|down_2|NC_021837.1_793616_794468_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|509aa|down_3|NC_021837.1_794509_796036_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|343aa|down_4|NC_021837.1_796304_797333_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|296aa|down_5|NC_021837.1_803123_804011_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|494aa|down_6|NC_021837.1_804111_805593_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|281aa|down_7|NC_021837.1_805640_806483_-	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|996aa|down_8|NC_021837.1_806981_809969_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|159aa|down_9|NC_021837.1_809968_810445_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]
