assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000438605.1_ASM43860v1	NC_021823	Listeria monocytogenes, complete sequence	1	2014864-2015025	1	CRISPRCasFinder	no	WYL	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	NA|140aa|up_7|NC_021823.1_2000151_2000571_-,NA|58aa|down_3|NC_021823.1_2017210_2017384_-	WYL|299aa|up_9|NC_021823.1_1998465_1999362_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NC_021823.1_1999406_1999976_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NC_021823.1_2000151_2000571_-	NA	NA|1311aa|up_6|NC_021823.1_2001520_2005453_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NC_021823.1_2005467_2006412_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NC_021823.1_2006471_2009747_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NC_021823.1_2010130_2011039_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NC_021823.1_2011094_2011559_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NC_021823.1_2011574_2013956_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NC_021823.1_2013989_2014736_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NC_021823.1_2015099_2015333_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NC_021823.1_2015432_2016176_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NC_021823.1_2016358_2017078_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NC_021823.1_2017210_2017384_-	NA	NA|431aa|down_4|NC_021823.1_2017486_2018779_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NC_021823.1_2018914_2020447_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|337aa|down_6|NC_021823.1_2022574_2023585_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_7|NC_021823.1_2023616_2024663_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|448aa|down_8|NC_021823.1_2025105_2026449_-	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|309aa|down_9|NC_021823.1_2026607_2027534_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)
GCF_000438605.1_ASM43860v1	NC_021823	Listeria monocytogenes, complete sequence	2	2272119-2272229	2	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	NA,NA|74aa|down_2|NC_021823.1_2272998_2273220_-,NA|52aa|down_4|NC_021823.1_2275160_2275316_+,NA|214aa|down_5|NC_021823.1_2275887_2276529_-	NA|330aa|up_9|NC_021823.1_2264044_2265034_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NC_021823.1_2265055_2265652_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NC_021823.1_2265655_2266030_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NC_021823.1_2266135_2266987_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NC_021823.1_2267105_2267945_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NC_021823.1_2268065_2268908_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NC_021823.1_2268953_2269199_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NC_021823.1_2269213_2269810_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NC_021823.1_2269918_2270236_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NC_021823.1_2270265_2272005_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NC_021823.1_2272331_2272796_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NC_021823.1_2272813_2272996_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NC_021823.1_2272998_2273220_-	NA	NA|455aa|down_3|NC_021823.1_2273354_2274719_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NC_021823.1_2275160_2275316_+	NA	NA|214aa|down_5|NC_021823.1_2275887_2276529_-	NA	NA|505aa|down_6|NC_021823.1_2277226_2278741_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NC_021823.1_2278856_2279795_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NC_021823.1_2279837_2280785_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NC_021823.1_2280926_2282666_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
GCF_000438605.1_ASM43860v1	NC_021823	Listeria monocytogenes, complete sequence	3	2955532-2956210	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	1	1	2956082-2956117	NC_021823.1_743205-743240	I-A:I-A:I-A	10,10,10	10	Unclear	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	NA|133aa|up_5|NC_021823.1_2950521_2950920_+,NA|193aa|down_0|NC_021823.1_2956601_2957180_+	NA|217aa|up_9|NC_021823.1_2946584_2947235_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NC_021823.1_2947343_2949404_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NC_021823.1_2949407_2950010_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NC_021823.1_2950037_2950505_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NC_021823.1_2950521_2950920_+	NA	NA|217aa|up_4|NC_021823.1_2950930_2951581_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NC_021823.1_2951577_2952624_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NC_021823.1_2952639_2952933_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NC_021823.1_2952947_2954219_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NC_021823.1_2954358_2955294_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NC_021823.1_2956601_2957180_+	NA	NA|227aa|down_1|NC_021823.1_2957286_2957967_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NC_021823.1_2957991_2958351_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NC_021823.1_2958357_2958816_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NC_021823.1_2959197_2961033_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NC_021823.1_2961133_2961565_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NC_021823.1_2961611_2963042_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NC_021823.1_2963162_2963978_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NC_021823.1_2964330_2965053_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NC_021823.1_2965068_2966757_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_000438605.1_ASM43860v1	NC_021823	Listeria monocytogenes, complete sequence	4	2972636-2976439	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	4	4	2972665-2972698|2973643-2973680|2974106-2974139|2975468-2975503	NC_021823.1_117475-117508|NC_021823.1_1855238-1855201|NC_021823.1_1888581-1888614|NC_021823.1_733309-733274	I-A:I-A:I-A	57,58,58	58	Unclear	RT,cas3,DEDDh,DinG,WYL,csa3,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	NA,NA|148aa|down_5|NC_021823.1_2981986_2982430_+,NA|492aa|down_9|NC_021823.1_2986739_2988215_+	NA|477aa|up_9|NC_021823.1_2961611_2963042_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|NC_021823.1_2963162_2963978_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|NC_021823.1_2964330_2965053_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NC_021823.1_2965068_2966757_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NC_021823.1_2966746_2967616_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|NC_021823.1_2967593_2968376_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|NC_021823.1_2968443_2970651_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NC_021823.1_2970664_2971153_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|333aa|up_1|NC_021823.1_2971156_2972155_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NC_021823.1_2972159_2972438_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NC_021823.1_2976511_2976880_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NC_021823.1_2977026_2978442_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NC_021823.1_2978573_2979578_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NC_021823.1_2979609_2980926_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NC_021823.1_2981127_2981880_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NC_021823.1_2981986_2982430_+	NA	NA|554aa|down_6|NC_021823.1_2982475_2984137_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NC_021823.1_2984393_2985725_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NC_021823.1_2985769_2986510_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NC_021823.1_2986739_2988215_+	NA
