The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	895391	949784	5036312	protease,holin,transposase,capsid,tail	Rhizobium_phage(18.18%)	55	NA	NA
WP_018068848.1|895391_896366_+|capsid	phage major capsid protein	capsid	Q94MS1	Myxococcus_phage	51.7	3.9e-84
WP_018068847.1|896388_897174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689689.1|897444_898017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018068845.1|898033_898741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689690.1|898737_900561_+	hypothetical protein	NA	A0A088F6U1	Sulfitobacter_phage	28.6	2.8e-43
WP_018068843.1|900557_900974_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_027689691.1|900939_901944_+|tail	tail fiber domain-containing protein	tail	A0A1L7QQ51	Brucella_phage	41.0	3.6e-56
WP_027689693.1|905676_907032_+	hypothetical protein	NA	L7TMF7	Rhizobium_phage	55.9	5.7e-73
WP_042941435.1|907107_908070_-	acyltransferase	NA	NA	NA	NA	NA
WP_027689695.1|908362_908920_+	acyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	51.8	6.9e-09
WP_027689696.1|909220_909475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171481036.1|909669_910353_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_018068827.1|910480_911017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024322739.1|911264_911519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689698.1|911493_911958_+	lysozyme	NA	A0A0K1LL70	Rhodobacter_phage	44.1	4.0e-26
WP_027689699.1|911957_912320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026170649.1|912339_912552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689700.1|912548_914156_+	hypothetical protein	NA	L7TKC4	Rhizobium_phage	68.3	1.8e-214
WP_027689701.1|914172_914601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018068820.1|914850_915036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018068819.1|915718_915919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018068818.1|916239_916422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018068817.1|916550_916787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024322733.1|916994_917438_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_017959492.1|917523_917670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027689702.1|917741_918104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018068814.1|918174_918438_-	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
WP_011650973.1|918578_918878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027689703.1|919069_919474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689704.1|919546_919921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689705.1|920063_921569_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.1	4.9e-25
WP_027689707.1|922128_923166_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_018068808.1|923219_924149_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024322727.1|924260_924860_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_018068806.1|924956_925877_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018068805.1|925878_926832_-	NmrA/HSCARG family protein	NA	NA	NA	NA	NA
WP_027689708.1|927128_928103_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_018068802.1|928148_929039_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018068800.1|930041_931538_-	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	28.1	1.8e-27
WP_018068799.1|931539_932493_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_018068798.1|932638_933397_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA	NA
WP_003546399.1|933817_934264_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_018068797.1|934456_934867_+	GFA family protein	NA	NA	NA	NA	NA
WP_018068796.1|934928_936581_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.1	1.2e-64
WP_018068795.1|936781_938245_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_024322718.1|938241_938868_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_018068794.1|939025_939574_+	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
WP_012756551.1|939773_940013_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_018068793.1|940125_941994_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_018068792.1|942167_943166_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_018068791.1|943259_944699_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	27.8	3.0e-16
WP_042941439.1|944800_945424_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_018068789.1|945449_946661_-	MFS transporter	NA	NA	NA	NA	NA
WP_130815404.1|947463_948435_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_027689711.1|948671_949784_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	1333837	1342891	5036312		Aeromonas_phage(14.29%)	9	NA	NA
WP_018070506.1|1333837_1335136_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.5	9.8e-99
WP_003547190.1|1335145_1335622_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_018070505.1|1335625_1336747_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.4	6.0e-36
WP_026170782.1|1336746_1337358_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.6	3.4e-17
WP_026170781.1|1337479_1338349_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.2	1.2e-95
WP_027689750.1|1338359_1339247_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_027689751.1|1339250_1340306_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.2	3.1e-95
WP_018070501.1|1340312_1340891_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	45.6	2.7e-32
WP_026170780.1|1340914_1342891_-	hypothetical protein	NA	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	26.7	2.3e-06
>prophage 3
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	1409892	1419896	5036312	protease	Bacillus_phage(16.67%)	6	NA	NA
WP_018069457.1|1409892_1411308_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.0	1.2e-12
WP_003547334.1|1411582_1412212_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.2	9.4e-63
WP_003547337.1|1412514_1413792_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.6	7.9e-133
WP_003547341.1|1414194_1416612_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.4	2.5e-204
WP_003558438.1|1416818_1417094_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	34.1	7.1e-07
WP_018069458.1|1417685_1419896_+	esterase-like activity of phytase family protein	NA	E3SJA5	Synechococcus_phage	40.7	1.2e-80
>prophage 4
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	1713508	1726891	5036312	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_018073373.1|1713508_1714522_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.7	7.3e-25
WP_024320655.1|1714540_1715398_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	2.5e-34
WP_018073375.1|1715394_1716111_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.0	2.0e-40
WP_018073376.1|1716292_1716484_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	5.8e-08
WP_018073377.1|1716535_1717147_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003558883.1|1717143_1717971_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	3.0e-53
WP_018073378.1|1718072_1719356_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	8.2e-98
WP_018073379.1|1719360_1720134_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	6.8e-23
WP_018073380.1|1720130_1720784_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.1	2.6e-15
WP_026171001.1|1721025_1722630_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	5.1e-12
WP_018073382.1|1722878_1723751_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003558894.1|1723957_1724305_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	2.4e-12
WP_018073383.1|1724350_1726891_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.6	5.7e-58
>prophage 5
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	1788456	1826670	5036312	head,terminase	Sinorhizobium_phage(60.0%)	49	NA	NA
WP_027689045.1|1788456_1789836_+	DUF4942 domain-containing protein	NA	A0A2I7RNS1	Vibrio_phage	34.5	8.5e-16
WP_027689046.1|1789832_1791095_+	site-specific DNA-methyltransferase	NA	A0A1B0VM49	Pseudomonas_phage	40.6	1.3e-71
WP_171481030.1|1791091_1791250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156925152.1|1791246_1791501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689048.1|1791497_1791818_+	VRR-NUC domain-containing protein	NA	NA	NA	NA	NA
WP_051320234.1|1791814_1792558_+	HNH endonuclease	NA	A0A1C9LVX4	Vibrio_phage	35.0	3.6e-05
WP_027689049.1|1792554_1793337_+	YdaU family protein	NA	A0A0U2RT81	Escherichia_phage	43.3	8.2e-16
WP_027689050.1|1793333_1793792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689051.1|1793788_1794079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689052.1|1794075_1794543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051320235.1|1794573_1795197_+	hypothetical protein	NA	A0A076G6H3	Sinorhizobium_phage	33.8	2.4e-18
WP_027689053.1|1795701_1795923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156925173.1|1796072_1796687_+	hypothetical protein	NA	A9YWZ4	Burkholderia_phage	53.6	2.5e-52
WP_027689055.1|1796708_1797167_+	DUF2280 domain-containing protein	NA	A0A125RNL6	Pseudomonas_phage	49.7	4.8e-32
WP_027689056.1|1797153_1798557_+|terminase	phage terminase large subunit	terminase	A0A0S4KXH6	Pseudomonas_phage	36.8	4.8e-75
WP_027689057.1|1798553_1799942_+	DUF1073 domain-containing protein	NA	A0A076G6H8	Sinorhizobium_phage	69.6	1.9e-185
WP_027689058.1|1799938_1800226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689059.1|1800247_1801372_+	hypothetical protein	NA	A0A076G8G2	Sinorhizobium_phage	72.8	2.6e-140
WP_027689060.1|1801372_1801819_+	hypothetical protein	NA	A0A076G7F5	Sinorhizobium_phage	57.6	3.8e-42
WP_027689061.1|1801831_1802872_+	hypothetical protein	NA	A0A076GD16	Sinorhizobium_phage	64.5	2.4e-127
WP_027689062.1|1802927_1803263_+	hypothetical protein	NA	A0A076G6Z4	Sinorhizobium_phage	58.8	8.6e-31
WP_027689063.1|1803307_1805197_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_156925153.1|1805212_1805515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027689065.1|1805715_1806225_+	hypothetical protein	NA	A0A076G6I4	Sinorhizobium_phage	69.1	6.9e-56
WP_027689066.1|1806217_1806586_+	hypothetical protein	NA	A0A076G8G5	Sinorhizobium_phage	50.9	2.0e-28
WP_027689067.1|1806582_1806777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171481040.1|1806789_1806960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689068.1|1806956_1807286_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA	NA
WP_027689069.1|1807285_1808338_+|head	head morphogenesis protein SPP1	head	A0A076G6I6	Sinorhizobium_phage	64.2	1.0e-114
WP_027689070.1|1808337_1808805_+	hypothetical protein	NA	A0A076G8G8	Sinorhizobium_phage	60.6	1.5e-44
WP_051320237.1|1808878_1809787_+	HNH endonuclease	NA	A0A218KCC2	Bacillus_phage	32.5	1.2e-18
WP_027689071.1|1809958_1810390_+	hypothetical protein	NA	A0A076G7G6	Sinorhizobium_phage	77.6	1.0e-60
WP_027689072.1|1810450_1811191_+	hypothetical protein	NA	A0A076GD25	Sinorhizobium_phage	72.4	3.2e-94
WP_027689073.1|1811190_1811625_+	hypothetical protein	NA	A0A076G701	Sinorhizobium_phage	70.8	3.1e-49
WP_085065891.1|1811651_1811951_+	hypothetical protein	NA	A0A076G6J1	Sinorhizobium_phage	66.0	3.7e-33
WP_027689074.1|1811955_1814847_+	hypothetical protein	NA	A0A076G7H2	Sinorhizobium_phage	47.9	1.7e-204
WP_027689075.1|1814849_1815581_+	hypothetical protein	NA	A0A076GD29	Sinorhizobium_phage	57.2	1.9e-78
WP_027689076.1|1815580_1816195_+	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	66.2	3.2e-76
WP_027689077.1|1816205_1816622_+	hypothetical protein	NA	A0A076G6J4	Sinorhizobium_phage	52.2	4.6e-34
WP_042941205.1|1816618_1818820_+	hypothetical protein	NA	A0A076G8H4	Sinorhizobium_phage	64.4	1.3e-260
WP_027689079.1|1818834_1821306_+	hypothetical protein	NA	A0A076G7H5	Sinorhizobium_phage	54.1	1.2e-49
WP_027689080.1|1821302_1821569_-	hypothetical protein	NA	A0A068CH68	Rhizobium_phage	44.3	1.2e-14
WP_051320238.1|1822820_1823111_+	hypothetical protein	NA	A0A076G8H8	Sinorhizobium_phage	49.4	7.0e-13
WP_051320239.1|1823265_1823532_+	hypothetical protein	NA	A0A068CDF0	Rhizobium_phage	88.6	6.4e-37
WP_027689083.1|1823528_1823711_+	hypothetical protein	NA	A0A068CCA1	Rhizobium_phage	88.3	9.7e-21
WP_051320240.1|1823710_1824190_+	hypothetical protein	NA	A0A068CH76	Rhizobium_phage	92.4	1.8e-74
WP_027689085.1|1824400_1824640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027689086.1|1824792_1825836_+	ATP-dependent DNA ligase	NA	A0A068CDF3	Rhizobium_phage	79.8	7.8e-155
WP_018073430.1|1826337_1826670_-	nuclease	NA	G8DH70	Emiliania_huxleyi_virus	39.3	1.8e-12
>prophage 6
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	3089757	3103286	5036312		Vibrio_phage(25.0%)	9	NA	NA
WP_018074040.1|3089757_3091815_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
WP_018074038.1|3092509_3093547_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	7.1e-15
WP_018074037.1|3093657_3094845_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	28.6	1.5e-37
WP_018074036.1|3095010_3095739_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	42.4	4.7e-50
WP_018074035.1|3095909_3097778_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.7	2.4e-77
WP_018074034.1|3097777_3099787_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.5	1.6e-87
WP_018074032.1|3100458_3101349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018074031.1|3101352_3101808_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.7	5.3e-15
WP_032996063.1|3102080_3103286_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.2	1.5e-40
>prophage 7
NZ_CP053205	Rhizobium leguminosarum bv. trifolii TA1 chromosome, complete genome	5036312	4061175	4068302	5036312		Mycobacterium_phage(33.33%)	7	NA	NA
WP_018068191.1|4061175_4061886_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	49.6	9.3e-51
WP_018068190.1|4061885_4062242_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_026170605.1|4062238_4062967_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.6	1.3e-39
WP_018068188.1|4062971_4064195_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	28.8	2.7e-13
WP_027689383.1|4064298_4065273_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	73.8	2.3e-137
WP_018068187.1|4065508_4067713_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.1	1.5e-211
WP_018243700.1|4068080_4068302_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	7.9e-17
>prophage 1
NZ_CP053209	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence	498418	204775	223444	498418	integrase,transposase	Leptospira_phage(100.0%)	13	204725:204784	223436:224242
204725:204784	attL	GGCGATGTCACGTTGTTTGATCAACGGCCGAAAAGTCGCTTGTCGGTAAACTCAGGCAAT	NA	NA	NA	NA
WP_027688364.1|204775_205480_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_027688513.1|206396_207374_-	oxidoreductase	NA	NA	NA	NA	NA
WP_027688512.1|207412_208156_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_027688511.1|208159_209209_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_018496486.1|211426_211768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688508.1|214200_214434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688506.1|214762_215788_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_027688505.1|215997_217035_+	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_027688504.1|217471_218332_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	33.7	4.0e-32
WP_130697937.1|218345_219512_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_130663640.1|220886_221048_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_165417479.1|222066_222354_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_027688364.1|222739_223444_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
223436:224242	attR	ATTGCCTGAGTTTACCGACAAGCGACTTTTCGGCCGTTGATCAAACAACGTGACATCGCCTCAGCAAATCCTCGCTCTTCTGAACGAAGGCCGTAATCTGGTCTTCATAGAGCTTCGTAATCATAATTGACGCCTGCTGTGAAGCTTCCTGCTCGGAGAAATGCACCTCAAAAGTGTACATGTACTCGCTTATCGAATCGCTCTTGAAAAATTCGTTCGATTTGAACGAGTCTGCCGAAATCGCTGCGAATAGCCGGAAACCGTTGCCGAGCGGCTCGGTTTTTACTTCTGTATGGTAAGTTAGCGAACTCGATGAGCCGAAGCTTTCGATTACACCAGACAGCACATCGAACACCTTCGCGGTCATGTAGAGTTCGAGGTTCGCCATGCCCTTGATTGCCGCACCCATCTTTTCGGTTTCGGCTTCTATGTTGATGCCATTGGGCATGTCCTTGGAGTTTCCAAACATCGCCTTGCCGATGGCACCGATGATCTTTTTAACATTGTTCAACGACCAATCAGAAGACAGCATGAATTCAGTCTTTTGGCCCTTGATGTATACCTGATGATGCCAGCCGCCGGTTTTATAGGTATTGGTGATTAAATCCTGTAGTGCCCTTTCGGTTCCGGCGGCCTTCTGATCGAGCTGAGATTCAAGCGTCTTCAGGTAGTCGTTGAAGGCAGTTCGCTTTGCAGCCAGTTCTGCGATAGATGGTGAATGTCCCACGTTTATTCTCCTCAATGCATGACTTCGATAATTAGAGGTATTTCTAGTCTCAGACTAAACTGCGCACTTACTTTCTGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP053209	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence	498418	226767	302085	498418	tail,transposase	Paenibacillus_phage(12.5%)	41	NA	NA
WP_130663641.1|226767_227519_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.1	2.1e-24
WP_027688359.1|228512_229271_+	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_027688360.1|229281_230169_+	GHMP kinase	NA	NA	NA	NA	NA
WP_027688361.1|230350_230989_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_042940979.1|231210_232905_+	asparagine synthase	NA	NA	NA	NA	NA
WP_027688493.1|235081_235864_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_027688492.1|235860_236730_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_130663643.1|236794_237892_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_027688490.1|238192_238999_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_027688489.1|238988_240467_+	alkaline phosphatase family protein	NA	NA	NA	NA	NA
WP_027688486.1|244277_245381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688485.1|245392_246382_-	ATP-binding protein	NA	A0A125SJ49	Acidianus_tailed_spindle_virus	33.6	2.2e-13
WP_051320207.1|246939_247662_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_085065864.1|249141_249513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688482.1|251788_252769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_027688480.1|253725_255549_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	30.5	1.3e-32
WP_051320205.1|256540_256834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688477.1|260210_261641_-	polygalacturonase	NA	NA	NA	NA	NA
WP_027688449.1|263391_263688_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_027689782.1|264242_264914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689783.1|265038_265755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027689785.1|266388_267132_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_130661510.1|267476_268193_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_027688479.1|268566_269427_+	S49 family peptidase	NA	A0A126DIM0	Acinetobacter_phage	28.8	2.7e-12
WP_130661510.1|270666_271383_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_085065862.1|272034_272265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085065861.1|272278_272494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085065860.1|273075_274854_+	insulinase family protein	NA	NA	NA	NA	NA
WP_027688469.1|283826_284954_-	ferritin-like protein	NA	NA	NA	NA	NA
WP_027688466.1|286907_287135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688465.1|287593_289150_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_017958612.1|289860_290019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688463.1|290330_290897_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_027688462.1|291463_292159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688461.1|292207_292867_+|tail	tail fiber protein	tail	A0A291LA10	Bordetella_phage	38.5	2.9e-14
WP_130683385.1|293455_294645_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	44.4	1.7e-52
WP_027688458.1|294899_295643_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_130661517.1|296160_296427_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_027688456.1|297363_298014_+	porin family protein	NA	NA	NA	NA	NA
WP_027688455.1|299584_300958_-|transposase	ISNCY family transposase	transposase	A1YTJ2	Porcine_endogenous_retrovirus	27.3	6.7e-05
WP_018494608.1|301083_302085_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.7	1.7e-42
>prophage 3
NZ_CP053209	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1A, complete sequence	498418	387949	437487	498418	integrase,protease,transposase	Pseudomonas_phage(25.0%)	45	379951:379972	437236:437257
379951:379972	attL	CGACAAATGGCATCTCGACGAA	NA	NA	NA	NA
WP_018483788.1|387949_388318_-|transposase	transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	38.8	1.8e-05
WP_027688389.1|389096_390026_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018068071.1|391411_391714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688386.1|392146_392857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688385.1|393282_395100_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_027688384.1|395101_396085_+	glycine oxidase ThiO	NA	NA	NA	NA	NA
WP_018068076.1|396068_396266_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_027688383.1|396269_397043_+	thiazole synthase	NA	NA	NA	NA	NA
WP_157629617.1|397358_397520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688382.1|397574_397922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018486537.1|398185_398413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688381.1|398766_399375_+	J domain-containing protein	NA	NA	NA	NA	NA
WP_027688380.1|400106_403370_-	error-prone DNA polymerase	NA	A0A1C9LWZ5	Streptomyces_phage	26.5	4.8e-86
WP_027688379.1|403366_404878_-	DNA polymerase Y family protein	NA	NA	NA	NA	NA
WP_027688378.1|404798_405557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688377.1|405731_405995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688376.1|407323_407809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688375.1|408059_408317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688374.1|408714_409158_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_027688372.1|409623_409824_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_027688371.1|409820_410204_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_027688370.1|410503_411394_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.1	2.3e-06
WP_085065853.1|411491_411827_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_027688369.1|412084_412651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688368.1|412647_413877_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_156925142.1|413949_414108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130663815.1|414104_414362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688367.1|415024_415465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027688366.1|416660_417065_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_027688365.1|417061_417295_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_027688364.1|417918_418623_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_042940979.1|419079_420774_-	asparagine synthase	NA	NA	NA	NA	NA
WP_027688361.1|420995_421634_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_027688360.1|421815_422703_-	GHMP kinase	NA	NA	NA	NA	NA
WP_027688359.1|422713_423472_-	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_027688356.1|425590_425854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027688355.1|425911_426544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130683353.1|426981_427497_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_130663926.1|427378_427921_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_130689242.1|428350_428983_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_027688354.1|429794_429995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130689793.1|430128_430989_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	33.5	9.0e-32
WP_027689888.1|433951_434665_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_156925176.1|434846_435572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130663929.1|436770_437487_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
437236:437257	attR	TTCGTCGAGATGCCATTTGTCG	NA	NA	NA	NA
>prophage 1
NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	662289	336094	345191	662289		Planktothrix_phage(33.33%)	9	NA	NA
WP_027688800.1|336094_337150_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	1.6e-27
WP_027688799.1|337149_337929_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	35.2	3.7e-08
WP_027688798.1|337912_338917_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.0	2.7e-19
WP_024320120.1|338916_339726_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_027688797.1|339800_341456_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.8	2.9e-18
WP_027688796.1|341584_342448_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_027688795.1|342520_343615_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_027688794.1|343626_344409_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	2.3e-18
WP_027688793.1|344405_345191_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	3.1e-15
