assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000430085.2_ASM43008v2	NC_021812	Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069, complete sequence	1	3292781-3292890	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|198aa|up_4|NC_021812.2_3286653_3287247_+,NA|276aa|up_2|NC_021812.2_3289164_3289992_-,NA	NA|470aa|up_9|NC_021812.2_3280003_3281413_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_8|NC_021812.2_3281409_3283590_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_7|NC_021812.2_3283597_3284761_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|355aa|up_6|NC_021812.2_3285361_3286426_+	PRK09692, PRK09692, integrase; Provisional	NA|56aa|up_5|NC_021812.2_3286439_3286607_+	PRK09692, PRK09692, integrase; Provisional	NA|198aa|up_4|NC_021812.2_3286653_3287247_+	NA	NA|398aa|up_3|NC_021812.2_3287636_3288830_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NC_021812.2_3289164_3289992_-	NA	NA|72aa|up_1|NC_021812.2_3290442_3290658_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NC_021812.2_3290693_3292763_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NC_021812.2_3293265_3294549_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|NC_021812.2_3294593_3295412_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|NC_021812.2_3295564_3295921_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|NC_021812.2_3296015_3296300_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|NC_021812.2_3296412_3296934_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|NC_021812.2_3296930_3297305_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|NC_021812.2_3297301_3298282_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|NC_021812.2_3298292_3299306_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|NC_021812.2_3299600_3300803_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|NC_021812.2_3300876_3301512_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCF_000430085.2_ASM43008v2	NC_021812	Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069, complete sequence	2	3483903-3485559	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	25,26,26,26,25	26	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_021812.2_3475769_3476531_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_021812.2_3476511_3477561_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_021812.2_3477557_3478037_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_021812.2_3478036_3478747_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_021812.2_3478765_3479077_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NC_021812.2_3479267_3479624_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_021812.2_3479641_3480247_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NC_021812.2_3480233_3481673_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_021812.2_3481682_3482591_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NC_021812.2_3482841_3483888_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_021812.2_3485655_3485949_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_021812.2_3485948_3486869_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_021812.2_3486865_3487516_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_021812.2_3487497_3488244_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NC_021812.2_3488254_3489313_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NC_021812.2_3489326_3489887_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NC_021812.2_3489883_3491440_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NC_021812.2_3491451_3494115_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NC_021812.2_3494558_3495512_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NC_021812.2_3495724_3496459_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000430085.2_ASM43008v2	NC_021812	Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069, complete sequence	3	3501817-3502943	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,17	18	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	cas7|353aa|up_9|NC_021812.2_3488254_3489313_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NC_021812.2_3489326_3489887_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NC_021812.2_3489883_3491440_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NC_021812.2_3491451_3494115_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NC_021812.2_3494558_3495512_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NC_021812.2_3495724_3496459_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NC_021812.2_3496534_3498247_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NC_021812.2_3498246_3500046_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NC_021812.2_3500469_3500832_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NC_021812.2_3500921_3501719_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NC_021812.2_3503239_3503911_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NC_021812.2_3504046_3505345_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NC_021812.2_3505427_3507065_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NC_021812.2_3507292_3508093_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NC_021812.2_3508697_3509285_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NC_021812.2_3509364_3512064_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NC_021812.2_3512076_3512850_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NC_021812.2_3512869_3513376_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NC_021812.2_3513390_3513861_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NC_021812.2_3513857_3514394_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_000430085.2_ASM43008v2	NC_021842	Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069 plasmid pCFSAN002069_02, complete sequence	1	3974-4093	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|91aa|up_0|NC_021842.2_495_768_-,NA|149aa|down_1|NC_021842.2_5221_5668_+,NA|119aa|down_2|NC_021842.2_5804_6161_+,NA|326aa|down_3|NC_021842.2_6157_7135_-,NA|94aa|down_4|NC_021842.2_7159_7441_-,NA|28aa|down_7|NC_021842.2_9380_9464_-,NA|117aa|down_8|NC_021842.2_11272_11623_+,NA|170aa|down_9|NC_021842.2_11706_12216_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|91aa|up_0|NC_021842.2_495_768_-	NA	NA|279aa|down_0|NC_021842.2_4345_5182_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_1|NC_021842.2_5221_5668_+	NA	NA|119aa|down_2|NC_021842.2_5804_6161_+	NA	NA|326aa|down_3|NC_021842.2_6157_7135_-	NA	NA|94aa|down_4|NC_021842.2_7159_7441_-	NA	NA|221aa|down_5|NC_021842.2_7538_8201_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|215aa|down_6|NC_021842.2_8581_9226_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|28aa|down_7|NC_021842.2_9380_9464_-	NA	NA|117aa|down_8|NC_021842.2_11272_11623_+	NA	NA|170aa|down_9|NC_021842.2_11706_12216_+	NA
