assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000418535.1_ASM41853v2	NC_020276	Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong2, complete sequence	1	3146-3416	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4	c2c9_V-U4	Type V-U4	GCGCACCCCACGCGCGCACAGGTGAGTCCG,CCCCACGCGCGCACAGGTGAGTCCG,CCCACGCGCGCACAGGTGAGTCCG	30,25,24	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeV-U4	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	NA|59aa|up_3|NC_020276.1_73_250_-,NA|123aa|up_2|NC_020276.1_439_808_-,NA|231aa|up_1|NC_020276.1_899_1592_+,NA|84aa|down_1|NC_020276.1_4334_4586_+,NA|171aa|down_4|NC_020276.1_7767_8280_-,NA|121aa|down_5|NC_020276.1_8393_8756_-,NA|69aa|down_6|NC_020276.1_9219_9426_+,NA|469aa|down_7|NC_020276.1_9812_11219_+,NA|364aa|down_8|NC_020276.1_11116_12208_-,NA|94aa|down_9|NC_020276.1_12200_12482_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|59aa|up_3|NC_020276.1_73_250_-	NA	NA|123aa|up_2|NC_020276.1_439_808_-	NA	NA|231aa|up_1|NC_020276.1_899_1592_+	NA	c2c9_V-U4|493aa|up_0|NC_020276.1_1665_3144_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|264aa|down_0|NC_020276.1_3535_4327_-	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|84aa|down_1|NC_020276.1_4334_4586_+	NA	NA|242aa|down_2|NC_020276.1_4620_5346_-	cd07502, HAD_PNKP-C, C-terminal phosphatase domain of T4 polynucleotide kinase/phosphatase (PNKP) and related phosphatases	NA|806aa|down_3|NC_020276.1_5353_7771_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|171aa|down_4|NC_020276.1_7767_8280_-	NA	NA|121aa|down_5|NC_020276.1_8393_8756_-	NA	NA|69aa|down_6|NC_020276.1_9219_9426_+	NA	NA|469aa|down_7|NC_020276.1_9812_11219_+	NA	NA|364aa|down_8|NC_020276.1_11116_12208_-	NA	NA|94aa|down_9|NC_020276.1_12200_12482_-	NA
GCF_000418535.1_ASM41853v2	NC_021715	Mycobacterium intracellulare subsp. yongonense 05-1390, complete sequence	1	1353014-1353092	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	Orphan	TCCGCCGCGGAGGTCCGTGGGCGCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	NA,NA	NA|589aa|up_9|NC_021715.1_1339699_1341466_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|up_8|NC_021715.1_1341647_1342205_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|up_7|NC_021715.1_1342213_1342744_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|up_6|NC_021715.1_1342838_1343342_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|up_5|NC_021715.1_1343506_1344658_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|up_4|NC_021715.1_1344654_1347276_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|415aa|up_3|NC_021715.1_1347371_1348616_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|545aa|up_2|NC_021715.1_1348602_1350237_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|612aa|up_1|NC_021715.1_1350271_1352107_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|303aa|up_0|NC_021715.1_1352103_1353012_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_0|NC_021715.1_1353134_1354112_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|164aa|down_1|NC_021715.1_1354324_1354816_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|147aa|down_2|NC_021715.1_1354894_1355335_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|310aa|down_3|NC_021715.1_1355447_1356377_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|614aa|down_4|NC_021715.1_1356376_1358218_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|162aa|down_5|NC_021715.1_1358276_1358762_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|130aa|down_6|NC_021715.1_1358779_1359169_-	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|138aa|down_7|NC_021715.1_1359212_1359626_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|293aa|down_8|NC_021715.1_1359692_1360571_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|289aa|down_9|NC_021715.1_1360640_1361507_+	pfam13424, TPR_12, Tetratricopeptide repeat
GCF_000418535.1_ASM41853v2	NC_021715	Mycobacterium intracellulare subsp. yongonense 05-1390, complete sequence	2	1559160-1559243	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	Orphan	GCGGCGGAGCCGGGCGCGGCGGGTCGCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	NA|89aa|up_6|NC_021715.1_1551081_1551348_-,NA|305aa|up_3|NC_021715.1_1555604_1556519_+,NA	NA|158aa|up_9|NC_021715.1_1548441_1548915_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|76aa|up_8|NC_021715.1_1549019_1549247_+	pfam12277, DUF3618, Protein of unknown function (DUF3618)	NA|580aa|up_7|NC_021715.1_1549233_1550973_-	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556)	NA|89aa|up_6|NC_021715.1_1551081_1551348_-	NA	NA|413aa|up_5|NC_021715.1_1551730_1552969_-	PRK01346, PRK01346, enhanced intracellular survival protein Eis	NA|789aa|up_4|NC_021715.1_1553163_1555530_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|305aa|up_3|NC_021715.1_1555604_1556519_+	NA	NA|399aa|up_2|NC_021715.1_1556666_1557863_+	pfam17964, Big_10, Bacterial Ig domain	NA|126aa|up_1|NC_021715.1_1557872_1558250_-	COG3417, FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]	NA|216aa|up_0|NC_021715.1_1558483_1559131_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|523aa|down_0|NC_021715.1_1559333_1560902_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|388aa|down_1|NC_021715.1_1561030_1562194_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|269aa|down_2|NC_021715.1_1562331_1563138_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|451aa|down_3|NC_021715.1_1563206_1564559_+	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only]	NA|258aa|down_4|NC_021715.1_1566665_1567439_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|219aa|down_5|NC_021715.1_1567508_1568165_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|530aa|down_6|NC_021715.1_1568360_1569950_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|666aa|down_7|NC_021715.1_1569955_1571953_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|389aa|down_8|NC_021715.1_1571949_1573116_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|166aa|down_9|NC_021715.1_1573112_1573610_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
GCF_000418535.1_ASM41853v2	NC_021715	Mycobacterium intracellulare subsp. yongonense 05-1390, complete sequence	3	2166454-2166519	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	Orphan	GCAGCCGGGCGCAGCGGGTCGCC	23	1	1	2166477-2166496	NC_021715.1_2166510-2166529	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	NA|299aa|up_4|NC_021715.1_2162269_2163166_+,NA|217aa|up_3|NC_021715.1_2163176_2163827_-,NA	NA|463aa|up_9|NC_021715.1_2156171_2157560_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|406aa|up_8|NC_021715.1_2157638_2158856_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|135aa|up_7|NC_021715.1_2159008_2159413_+	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function	NA|516aa|up_6|NC_021715.1_2159406_2160954_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|350aa|up_5|NC_021715.1_2160958_2162008_-	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|299aa|up_4|NC_021715.1_2162269_2163166_+	NA	NA|217aa|up_3|NC_021715.1_2163176_2163827_-	NA	NA|203aa|up_2|NC_021715.1_2163993_2164602_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|135aa|up_1|NC_021715.1_2164928_2165333_+	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|144aa|up_0|NC_021715.1_2165772_2166204_+	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|326aa|down_0|NC_021715.1_2166574_2167552_+	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]	NA|692aa|down_1|NC_021715.1_2168797_2170873_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|377aa|down_2|NC_021715.1_2170924_2172055_-	PRK07588, PRK07588, FAD-binding domain	NA|186aa|down_3|NC_021715.1_2172166_2172724_+	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|523aa|down_4|NC_021715.1_2172789_2174358_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|516aa|down_5|NC_021715.1_2174354_2175902_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|360aa|down_6|NC_021715.1_2175898_2176978_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|486aa|down_7|NC_021715.1_2176977_2178435_+	PRK03369, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA|566aa|down_8|NC_021715.1_2178443_2180141_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|406aa|down_9|NC_021715.1_2180137_2181355_+	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
GCF_000418535.1_ASM41853v2	NC_021715	Mycobacterium intracellulare subsp. yongonense 05-1390, complete sequence	4	5346669-5346755	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	Orphan	CGGCGCGAGTGAGGAGCCGGACAATCGTGC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas4,WYL,c2c9_V-U4,RT,PrimPol	NA|74aa|up_3|NC_021715.1_5338664_5338886_+,NA	NA|541aa|up_9|NC_021715.1_5332622_5334245_+	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)	NA|258aa|up_8|NC_021715.1_5334246_5335020_+	cd05233, SDR_c, classical (c) SDRs	NA|506aa|up_7|NC_021715.1_5335016_5336534_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|381aa|up_6|NC_021715.1_5336548_5337691_+	TIGR03989, Zn-dependent_alcohol_dehydrogenase_class_III, NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family	NA|166aa|up_5|NC_021715.1_5337668_5338166_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|127aa|up_4|NC_021715.1_5338240_5338621_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|74aa|up_3|NC_021715.1_5338664_5338886_+	NA	NA|245aa|up_2|NC_021715.1_5338979_5339714_-	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|256aa|up_1|NC_021715.1_5339743_5340511_-	cd05233, SDR_c, classical (c) SDRs	NA|318aa|up_0|NC_021715.1_5340667_5341621_+	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|302aa|down_0|NC_021715.1_5348316_5349222_-	PRK07201, PRK07201, SDR family oxidoreductase	NA|248aa|down_1|NC_021715.1_5349523_5350267_+	pfam01083, Cutinase, Cutinase	NA|255aa|down_2|NC_021715.1_5350348_5351113_-	COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]	NA|325aa|down_3|NC_021715.1_5351259_5352234_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|202aa|down_4|NC_021715.1_5352420_5353026_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|462aa|down_5|NC_021715.1_5353066_5354452_+	cd07302, CHD, cyclase homology domain	NA|249aa|down_6|NC_021715.1_5354549_5355296_+	PRK08317, PRK08317, hypothetical protein; Provisional	NA|151aa|down_7|NC_021715.1_5355313_5355766_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|232aa|down_8|NC_021715.1_5355824_5356520_-	PRK08264, PRK08264, SDR family oxidoreductase	NA|182aa|down_9|NC_021715.1_5356668_5357214_+	pfam11706, zf-CGNR, CGNR zinc finger
