assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000418475.1_ASM41847v1	NC_021723	Lactobacillus rhamnosus LOCK900, complete sequence	1	1108788-1108939	1	CRISPRCasFinder	no		csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	GGGCCATCACGCCCAAGGCCACAAGTCCGTCTTTACGCCCATAACGCGTTC	51	1	1	1108839-1108888	NC_021723.1_1228458-1228507	NA	1	1	Orphan	csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|51aa|up_9|NC_021723.1_1101953_1102106_+,NA|61aa|down_8|NC_021723.1_1117281_1117464_+	NA|51aa|up_9|NC_021723.1_1101953_1102106_+	NA	NA|79aa|up_8|NC_021723.1_1102145_1102382_+	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|330aa|up_7|NC_021723.1_1102446_1103436_+	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|57aa|up_6|NC_021723.1_1103448_1103619_+	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta	NA|102aa|up_5|NC_021723.1_1103627_1103933_+	PRK14379, PRK14379, membrane protein insertion efficiency factor YidD	NA|74aa|up_4|NC_021723.1_1103925_1104147_+	pfam11184, DUF2969, Protein of unknown function (DUF2969)	NA|402aa|up_3|NC_021723.1_1104268_1105474_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|100aa|up_2|NC_021723.1_1105485_1105785_+	cd06848, GCS_H, Glycine cleavage H-protein	NA|375aa|up_1|NC_021723.1_1105914_1107039_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|276aa|up_0|NC_021723.1_1107540_1108368_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|277aa|down_0|NC_021723.1_1109420_1110251_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|351aa|down_1|NC_021723.1_1110269_1111322_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|230aa|down_2|NC_021723.1_1111326_1112016_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|256aa|down_3|NC_021723.1_1112196_1112964_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|344aa|down_4|NC_021723.1_1112956_1113988_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|399aa|down_5|NC_021723.1_1113980_1115177_+	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|149aa|down_6|NC_021723.1_1115163_1115610_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|479aa|down_7|NC_021723.1_1115602_1117039_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|61aa|down_8|NC_021723.1_1117281_1117464_+	NA	NA|127aa|down_9|NC_021723.1_1117798_1118179_+	pfam07997, DUF1694, Protein of unknown function (DUF1694)
GCF_000418475.1_ASM41847v1	NC_021723	Lactobacillus rhamnosus LOCK900, complete sequence	2	1228339-1228453	2	CRISPRCasFinder	no		csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	CTTACATTCTAGCTTACGCCCATAACGC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|151aa|up_2|NC_021723.1_1226759_1227212_+,NA|100aa|up_1|NC_021723.1_1227234_1227534_+,NA	NA|221aa|up_9|NC_021723.1_1217980_1218643_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|224aa|up_8|NC_021723.1_1218688_1219360_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|822aa|up_7|NC_021723.1_1219346_1221812_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|406aa|up_6|NC_021723.1_1221817_1223035_+	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|317aa|up_5|NC_021723.1_1223163_1224114_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|561aa|up_4|NC_021723.1_1224365_1226048_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|71aa|up_3|NC_021723.1_1226052_1226265_-	PRK13667, PRK13667, hypothetical protein; Provisional	NA|151aa|up_2|NC_021723.1_1226759_1227212_+	NA	NA|100aa|up_1|NC_021723.1_1227234_1227534_+	NA	NA|185aa|up_0|NC_021723.1_1227575_1228130_-	PRK00150, def, peptide deformylase; Reviewed	NA|272aa|down_0|NC_021723.1_1229005_1229821_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|371aa|down_1|NC_021723.1_1230081_1231194_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|326aa|down_2|NC_021723.1_1231196_1232174_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|552aa|down_3|NC_021723.1_1232191_1233847_+	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|468aa|down_4|NC_021723.1_1233849_1235253_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|297aa|down_5|NC_021723.1_1235498_1236389_+	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]	NA|94aa|down_6|NC_021723.1_1236378_1236660_+	pfam05256, UPF0223, Uncharacterized protein family (UPF0223)	NA|265aa|down_7|NC_021723.1_1236662_1237457_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|615aa|down_8|NC_021723.1_1237709_1239554_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|390aa|down_9|NC_021723.1_1239799_1240969_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]
GCF_000418475.1_ASM41847v1	NC_021723	Lactobacillus rhamnosus LOCK900, complete sequence	3	2145287-2147173	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	Type II-C,Type II-B,Type II-A	GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	28,28,23	28	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|367aa|up_1|NC_021723.1_2143441_2144542_-,NA	NA|215aa|up_9|NC_021723.1_2132600_2133245_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|262aa|up_8|NC_021723.1_2133310_2134096_-	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|483aa|up_7|NC_021723.1_2134555_2136004_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|612aa|up_6|NC_021723.1_2136022_2137858_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|291aa|up_5|NC_021723.1_2138306_2139179_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|541aa|up_4|NC_021723.1_2139310_2140933_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|565aa|up_3|NC_021723.1_2140925_2142620_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_2|NC_021723.1_2142831_2143257_-	pfam07009, NusG_II, NusG domain II	NA|367aa|up_1|NC_021723.1_2143441_2144542_-	NA	NA|163aa|up_0|NC_021723.1_2144749_2145238_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	csn2|227aa|down_0|NC_021723.1_2147193_2147874_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NC_021723.1_2147870_2148176_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NC_021723.1_2148153_2149059_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1362aa|down_3|NC_021723.1_2149250_2153336_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|576aa|down_4|NC_021723.1_2153630_2155358_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_5|NC_021723.1_2155338_2157081_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_6|NC_021723.1_2157077_2158091_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|down_7|NC_021723.1_2158087_2159512_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|435aa|down_8|NC_021723.1_2159743_2161048_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|340aa|down_9|NC_021723.1_2161148_2162168_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively
GCF_000418475.1_ASM41847v1	NC_021723	Lactobacillus rhamnosus LOCK900, complete sequence	4	2504436-2504585	4	CRISPRCasFinder	no	cas3	csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	Unclear	TTGGGCGCAATGGCCAAAGACCGGCCATCACGCCCAAGGCCACTTA	46	1	1	2504482-2504539	NC_021723.1_2504379-2504436	NA	1	1	Unclear	csa3,DinG,WYL,cas14j,DEDDh,cas3,csn2,cas2,cas1,cas9	NA,NA|255aa|down_6|NC_021723.1_2510403_2511168_-,NA|225aa|down_8|NC_021723.1_2512026_2512701_-,NA|143aa|down_9|NC_021723.1_2512956_2513385_+	NA|327aa|up_9|NC_021723.1_2489863_2490844_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|457aa|up_8|NC_021723.1_2491250_2492621_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|179aa|up_7|NC_021723.1_2492749_2493286_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|484aa|up_6|NC_021723.1_2493432_2494884_+	TIGR03061, hypothetical_protein_lp_1332, YhgE/Pip N-terminal domain	NA|199aa|up_5|NC_021723.1_2494947_2495544_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|222aa|up_4|NC_021723.1_2495712_2496378_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|233aa|up_3|NC_021723.1_2496674_2497373_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|479aa|up_2|NC_021723.1_2497452_2498889_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1489aa|up_1|NC_021723.1_2498953_2503420_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|176aa|up_0|NC_021723.1_2503715_2504243_-	pfam06177, QueT, QueT transporter	NA|128aa|down_0|NC_021723.1_2504654_2505038_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|83aa|down_1|NC_021723.1_2505057_2505306_-	PHA01623, PHA01623, hypothetical protein	NA|380aa|down_2|NC_021723.1_2505417_2506557_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|125aa|down_3|NC_021723.1_2506543_2506918_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|503aa|down_4|NC_021723.1_2507086_2508595_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|463aa|down_5|NC_021723.1_2508868_2510257_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|255aa|down_6|NC_021723.1_2510403_2511168_-	NA	NA|214aa|down_7|NC_021723.1_2511369_2512011_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|225aa|down_8|NC_021723.1_2512026_2512701_-	NA	NA|143aa|down_9|NC_021723.1_2512956_2513385_+	NA
