bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.55	29	1	0	1	29	390516	390488	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	390488-390516	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.55	29	1	0	1	29	390571	390543	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	390543-390571	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.55	29	1	0	1	29	1957296	1957268	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1957268-1957296	TTTCGAAAAGAAATTCTACAGACAATGCA	1
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	312247	312219	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	312219-312247	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	920835	920863	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	920835-920863	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	1003528	1003556	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1003528-1003556	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	1604562	1604590	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1604562-1604590	TGCATTGTCTGTAGAATTTCTTTTTGAAA	2
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	1771254	1771282	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1771254-1771282	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	2124155	2124183	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2124155-2124183	TGCATTGTCTGTAGAATTTCCTTTCGAAA	2
NC_021670	Staphylococcus aureus, complete sequence	4.1|870910|29|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	2670833	2670805	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2670805-2670833	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_021670	Staphylococcus aureus, complete sequence	5.1|920793|34|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	100.00	34	0	0	1	34	1303832	1303799	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1303799-1303832	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NC_021670	Staphylococcus aureus, complete sequence	5.1|920793|34|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	100.00	34	0	0	1	34	1394999	1395032	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1394999-1395032	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NC_021670	Staphylococcus aureus, complete sequence	7.1|1604473|26|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.15	26	1	0	1	26	312112	312087	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	312087-312112	CGGGCCCCCAACATAGAAGCTGGCGG	1
NC_021670	Staphylococcus aureus, complete sequence	7.1|1604473|26|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.15	26	1	0	1	26	839385	839360	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	839360-839385	CGGGGCCCCAACATAGAAGCAGGCGG	1
NC_021670	Staphylococcus aureus, complete sequence	7.1|1604473|26|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.15	26	1	0	1	26	876312	876337	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-05	39.6	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	876312-876337	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NC_021670	Staphylococcus aureus, complete sequence	7.1|1604473|26|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	92.31	26	2	0	1	26	839329	839304	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-04	36.5	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	839304-839329	CGGGGCCCCAACACAGAAGCAGGCGG	2
NC_021670	Staphylococcus aureus, complete sequence	7.1|1604473|26|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	92.31	26	2	0	1	26	839441	839416	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-04	36.5	1.0	CCGCCAGCTTCTATGTTGGGGCCCCG	839416-839441	CGGGGCCCCAACATAAAAGCAGGCGG	2
NC_021670	Staphylococcus aureus, complete sequence	8.1|1608425|29|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	96.55	29	1	0	1	29	2227975	2228003	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-07	44.4	1.0	CTGTAGAAATTGGGGTTCCAATTTCTCTA	2227975-2228003	CTGTAGAAATTGGTGTTCCAATTTCTCTA	1
NC_021670	Staphylococcus aureus, complete sequence	8.1|1608425|29|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	828052	828024	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	CTGTAGAAATTGGGGTTCCAATTTCTCTA	828024-828052	TAGAGAAATTGGATTCCCAATTTCTACAG	2
NC_021670	Staphylococcus aureus, complete sequence	8.1|1608425|29|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	876352	876380	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	CTGTAGAAATTGGGGTTCCAATTTCTCTA	876352-876380	CTGTAGAAATTGGGAATCCAATTTCTCTA	2
NC_021670	Staphylococcus aureus, complete sequence	8.1|1608425|29|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.10	29	2	0	1	29	2785853	2785881	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-06	41.2	1.0	CTGTAGAAATTGGGGTTCCAATTTCTCTA	2785853-2785881	CTGTAGAAATTGGGAATCCAATTTCTCTA	2
NC_021670	Staphylococcus aureus, complete sequence	8.4|1608594|29|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	96.55	29	1	0	1	29	1608650	1608678	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-07	44.4	1.0	CTGTTGAAATTGGTGATCCTATTTCTCTC	1608650-1608678	CTGTTGGAATTGGTGATCCTATTTCTCTC	1
NC_021670	Staphylococcus aureus, complete sequence	11.1|2476099|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	1303786	1303754	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1303754-1303786	CAGAAGATGACGAAAAGTCAGCTTACAATAATG	2
NC_021670	Staphylococcus aureus, complete sequence	11.1|2476099|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	1395045	1395077	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1395045-1395077	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	11.1|2476099|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	1604509	1604541	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1604509-1604541	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	11.1|2476099|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	2751584	2751616	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2751584-2751616	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	11.2|2476155|36|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	100.00	36	0	0	1	36	1604562	1604597	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1604562-1604597	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	0
NC_021670	Staphylococcus aureus, complete sequence	11.2|2476155|36|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	97.22	36	1	0	1	36	1957296	1957261	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1957261-1957296	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NC_021670	Staphylococcus aureus, complete sequence	11.2|2476155|36|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	94.44	36	2	0	1	36	312247	312212	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	312212-312247	TAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_021670	Staphylococcus aureus, complete sequence	11.2|2476155|36|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	94.44	36	2	0	1	36	1771254	1771289	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1771254-1771289	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NC_021670	Staphylococcus aureus, complete sequence	11.2|2476155|36|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	94.44	36	2	0	1	36	2124155	2124190	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2124155-2124190	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NC_021670	Staphylococcus aureus, complete sequence	11.3|2476214|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	876292	876324	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	876292-876324	CATTATTGTAAGCTGACTTTCCGCCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	11.3|2476214|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	1395045	1395077	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1395045-1395077	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	11.3|2476214|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	1604509	1604541	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1604509-1604541	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	11.3|2476214|33|NC_021670|CRT	NC_021670.1	Staphylococcus aureus, complete sequence	93.94	33	2	0	1	33	2751584	2751616	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2751584-2751616	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_021670	Staphylococcus aureus, complete sequence	12.1|2974379|32|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.88	32	1	0	1	32	876392	876423	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	876392-876423	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NC_021670	Staphylococcus aureus, complete sequence	12.1|2974379|32|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.88	32	1	0	1	32	876450	876481	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	876450-876481	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NC_021670	Staphylococcus aureus, complete sequence	12.1|2974379|32|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.88	32	1	0	1	32	1127245	1127276	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1127245-1127276	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NC_021670	Staphylococcus aureus, complete sequence	12.1|2974379|32|NC_021670|CRISPRCasFinder	NC_021670.1	Staphylococcus aureus, complete sequence	96.88	32	1	0	1	32	1303742	1303711	444097-444197|707855-707947|828040-828122|870884-870964|920769-920850|1117285-1117372|1604443-1604528|1608398-1608649|2113434-2113512|2352097-2352247|2476076-2476269|2974353-2974436	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1303711-1303742	AGAAATTCTACAGGCAATGCGAGTTGGGGTGT	1
