assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	1	444097-444197	1	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|70aa|up_8|NC_021670.1_435669_435879_-,NA|128aa|up_6|NC_021670.1_436703_437087_-,NA|34aa|up_0|NC_021670.1_443321_443423_+,NA|221aa|down_1|NC_021670.1_445287_445950_-	NA|84aa|up_9|NC_021670.1_435379_435631_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_021670.1_435669_435879_-	NA	NA|194aa|up_7|NC_021670.1_436056_436638_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_021670.1_436703_437087_-	NA	NA|209aa|up_5|NC_021670.1_437341_437968_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_021670.1_438412_439936_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_021670.1_439951_440521_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_021670.1_441012_441768_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_021670.1_441848_443237_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NC_021670.1_443321_443423_+	NA	NA|319aa|down_0|NC_021670.1_444213_445170_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NC_021670.1_445287_445950_-	NA	NA|136aa|down_2|NC_021670.1_446092_446500_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_021670.1_447012_447591_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_021670.1_447590_448859_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_021670.1_448896_450363_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_021670.1_450387_451929_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NC_021670.1_451996_453190_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NC_021670.1_453216_453417_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NC_021670.1_453914_454145_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	2	707855-707947	2	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|36aa|up_3|NC_021670.1_704338_704446_+,NA|169aa|down_4|NC_021670.1_711694_712201_+,NA|239aa|down_5|NC_021670.1_712362_713079_+	NA|313aa|up_9|NC_021670.1_698540_699479_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NC_021670.1_699689_700226_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NC_021670.1_700394_700871_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NC_021670.1_700910_702206_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NC_021670.1_702233_702755_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NC_021670.1_703253_704264_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NC_021670.1_704338_704446_+	NA	NA|139aa|up_2|NC_021670.1_704538_704955_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_021670.1_704951_706613_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_021670.1_707001_707637_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NC_021670.1_708015_708903_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_021670.1_709050_710001_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_021670.1_710055_710775_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_021670.1_710758_711559_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_021670.1_711694_712201_+	NA	NA|239aa|down_5|NC_021670.1_712362_713079_+	NA	NA|263aa|down_6|NC_021670.1_713247_714036_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NC_021670.1_714286_714661_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NC_021670.1_715608_716538_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NC_021670.1_716732_716957_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	3	828040-828122	3	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|69aa|up_9|NC_021670.1_814640_814847_+,NA|34aa|down_1|NC_021670.1_829578_829680_+,NA|52aa|down_9|NC_021670.1_839651_839807_+	NA|69aa|up_9|NC_021670.1_814640_814847_+	NA	NA|237aa|up_8|NC_021670.1_814934_815645_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_021670.1_815628_816633_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_021670.1_817106_819047_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_021670.1_819317_821201_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_021670.1_821212_822994_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_021670.1_823215_824193_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_021670.1_824185_825700_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_021670.1_825939_826998_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_021670.1_827348_827891_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_021670.1_828570_829488_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_021670.1_829578_829680_+	NA	NA|535aa|down_2|NC_021670.1_829819_831424_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|502aa|down_3|NC_021670.1_831549_833055_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_4|NC_021670.1_833395_833896_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NC_021670.1_833915_834782_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_6|NC_021670.1_835582_835981_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_7|NC_021670.1_835943_838049_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_8|NC_021670.1_838166_839138_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_9|NC_021670.1_839651_839807_+	NA
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	4	870884-870964	4	CRISPRCasFinder	no	cas3	csa3,WYL,cas3,DinG,DEDDh	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	870910-870938|870910-870938|870910-870938|870910-870938|870910-870938|870910-870938|870910-870938|870910-870938|870910-870938|870910-870938	NC_021670.1_390516-390488|NC_021670.1_390571-390543|NC_021670.1_1957296-1957268|NC_021670.1_312247-312219|NC_021670.1_920835-920863|NC_021670.1_1003528-1003556|NC_021670.1_1604562-1604590|NC_021670.1_1771254-1771282|NC_021670.1_2124155-2124183|NC_021670.1_2670833-2670805	NA	1	1	Unclear	csa3,WYL,cas3,DinG,DEDDh	NA|35aa|up_7|NC_021670.1_861797_861902_+,NA|36aa|up_5|NC_021670.1_863334_863442_+,NA	NA|191aa|up_9|NC_021670.1_858238_858811_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_021670.1_859224_861756_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_021670.1_861797_861902_+	NA	NA|370aa|up_6|NC_021670.1_862070_863181_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_021670.1_863334_863442_+	NA	NA|280aa|up_4|NC_021670.1_863589_864429_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_021670.1_864602_865253_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_021670.1_865249_865486_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_021670.1_865754_867740_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_021670.1_867747_870594_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_021670.1_871200_872133_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_021670.1_872138_872978_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_021670.1_872985_873471_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_021670.1_873478_874918_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_021670.1_874984_875920_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_021670.1_876743_877655_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_021670.1_877651_878647_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_021670.1_878756_879701_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_021670.1_880273_880861_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_021670.1_881103_882006_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	5	920769-920850	5	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	920793-920826|920793-920826	NC_021670.1_1303832-1303799|NC_021670.1_1394999-1395032	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA,NA	NA|194aa|up_9|NC_021670.1_913872_914454_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_021670.1_914526_915144_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_021670.1_915298_915793_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_021670.1_916191_916614_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_021670.1_916761_917478_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_021670.1_917560_918100_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_021670.1_918249_918570_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_021670.1_918713_919070_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_021670.1_919227_919608_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_021670.1_919786_920665_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_021670.1_921406_921793_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_021670.1_921785_922082_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_021670.1_922331_923357_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_021670.1_923349_924045_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_021670.1_924062_924884_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NC_021670.1_925027_926248_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NC_021670.1_926261_927650_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NC_021670.1_927676_928249_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NC_021670.1_928420_928642_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NC_021670.1_928642_928915_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	6	1117285-1117372	6	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA,NA|45aa|down_0|NC_021670.1_1117381_1117516_-,NA|432aa|down_1|NC_021670.1_1117667_1118963_+	NA|224aa|up_9|NC_021670.1_1105075_1105747_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NC_021670.1_1105739_1107929_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NC_021670.1_1107907_1109392_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NC_021670.1_1109384_1110413_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NC_021670.1_1110415_1110982_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NC_021670.1_1110996_1112475_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NC_021670.1_1112496_1113744_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NC_021670.1_1114008_1114815_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NC_021670.1_1114807_1116208_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NC_021670.1_1116222_1116798_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NC_021670.1_1117381_1117516_-	NA	NA|432aa|down_1|NC_021670.1_1117667_1118963_+	NA	NA|391aa|down_2|NC_021670.1_1119387_1120560_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_021670.1_1120613_1121156_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_021670.1_1121309_1121576_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_021670.1_1121578_1123297_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_021670.1_1123533_1123767_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_021670.1_1123964_1125326_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_021670.1_1125322_1126342_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_021670.1_1126474_1127137_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	7	1604443-1604528	7	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	1604473-1604498|1604473-1604498|1604473-1604498|1604473-1604498|1604473-1604498	NC_021670.1_312112-312087|NC_021670.1_839385-839360|NC_021670.1_876312-876337|NC_021670.1_839329-839304|NC_021670.1_839441-839416	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|76aa|up_5|NC_021670.1_1597239_1597467_-,NA|75aa|down_0|NC_021670.1_1604767_1604992_-,NA|49aa|down_1|NC_021670.1_1604948_1605095_-,NA|78aa|down_3|NC_021670.1_1607203_1607437_+,NA|62aa|down_4|NC_021670.1_1608058_1608244_+,NA|169aa|down_7|NC_021670.1_1610268_1610775_-,NA|31aa|down_9|NC_021670.1_1611807_1611900_+	NA|45aa|up_9|NC_021670.1_1594313_1594448_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|up_8|NC_021670.1_1594504_1594639_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_7|NC_021670.1_1595550_1595739_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_6|NC_021670.1_1595987_1596935_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_5|NC_021670.1_1597239_1597467_-	NA	NA|519aa|up_4|NC_021670.1_1597774_1599331_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_3|NC_021670.1_1599502_1600435_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_2|NC_021670.1_1600457_1601459_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_1|NC_021670.1_1602717_1603443_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NC_021670.1_1603550_1604267_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NC_021670.1_1604767_1604992_-	NA	NA|49aa|down_1|NC_021670.1_1604948_1605095_-	NA	NA|320aa|down_2|NC_021670.1_1605767_1606727_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NC_021670.1_1607203_1607437_+	NA	NA|62aa|down_4|NC_021670.1_1608058_1608244_+	NA	NA|117aa|down_5|NC_021670.1_1609008_1609359_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NC_021670.1_1609512_1610010_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NC_021670.1_1610268_1610775_-	NA	NA|134aa|down_8|NC_021670.1_1611446_1611848_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_9|NC_021670.1_1611807_1611900_+	NA
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	8	1608398-1608649	1	CRT	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	TNTNGGNNCCNCNCCAACTTGCATTGT	27	2	5	1608425-1608453|1608425-1608453|1608425-1608453|1608425-1608453|1608594-1608622	NC_021670.1_2227975-2228003|NC_021670.1_828052-828024|NC_021670.1_876352-876380|NC_021670.1_2785853-2785881|NC_021670.1_1608650-1608678	NA	4	4	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|75aa|up_4|NC_021670.1_1604767_1604992_-,NA|49aa|up_3|NC_021670.1_1604948_1605095_-,NA|78aa|up_1|NC_021670.1_1607203_1607437_+,NA|62aa|up_0|NC_021670.1_1608058_1608244_+,NA|169aa|down_2|NC_021670.1_1610268_1610775_-,NA|31aa|down_4|NC_021670.1_1611807_1611900_+,NA|56aa|down_6|NC_021670.1_1612739_1612907_-	NA|519aa|up_9|NC_021670.1_1597774_1599331_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_8|NC_021670.1_1599502_1600435_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_7|NC_021670.1_1600457_1601459_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_6|NC_021670.1_1602717_1603443_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NC_021670.1_1603550_1604267_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NC_021670.1_1604767_1604992_-	NA	NA|49aa|up_3|NC_021670.1_1604948_1605095_-	NA	NA|320aa|up_2|NC_021670.1_1605767_1606727_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NC_021670.1_1607203_1607437_+	NA	NA|62aa|up_0|NC_021670.1_1608058_1608244_+	NA	NA|117aa|down_0|NC_021670.1_1609008_1609359_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NC_021670.1_1609512_1610010_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NC_021670.1_1610268_1610775_-	NA	NA|134aa|down_3|NC_021670.1_1611446_1611848_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_4|NC_021670.1_1611807_1611900_+	NA	NA|110aa|down_5|NC_021670.1_1612216_1612546_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NC_021670.1_1612739_1612907_-	NA	NA|168aa|down_7|NC_021670.1_1613034_1613538_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NC_021670.1_1613530_1614118_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NC_021670.1_1614129_1614930_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	9	2113434-2113512	8	CRISPRCasFinder	no	DEDDh	csa3,WYL,cas3,DinG,DEDDh	Unclear	AATTTCTCTATGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|92aa|up_6|NC_021670.1_2107638_2107914_+,NA|129aa|up_1|NC_021670.1_2111899_2112286_-,NA|138aa|down_1|NC_021670.1_2115149_2115563_-,NA|37aa|down_2|NC_021670.1_2115591_2115702_-,NA|31aa|down_6|NC_021670.1_2118707_2118800_-	NA|419aa|up_9|NC_021670.1_2105561_2106818_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NC_021670.1_2106820_2107021_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NC_021670.1_2107167_2107632_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NC_021670.1_2107638_2107914_+	NA	NA|406aa|up_5|NC_021670.1_2108191_2109409_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NC_021670.1_2109524_2110154_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NC_021670.1_2110143_2111187_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NC_021670.1_2111183_2111885_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NC_021670.1_2111899_2112286_-	NA	NA|253aa|up_0|NC_021670.1_2112502_2113261_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NC_021670.1_2113732_2114719_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NC_021670.1_2115149_2115563_-	NA	NA|37aa|down_2|NC_021670.1_2115591_2115702_-	NA	NA|244aa|down_3|NC_021670.1_2115787_2116519_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NC_021670.1_2116520_2117834_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NC_021670.1_2118125_2118626_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NC_021670.1_2118707_2118800_-	NA	DEDDh|185aa|down_7|NC_021670.1_2119014_2119569_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NC_021670.1_2119636_2120707_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NC_021670.1_2120953_2121484_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	10	2352097-2352247	9	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DinG,DEDDh	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|77aa|up_5|NC_021670.1_2346968_2347199_-,NA|364aa|up_0|NC_021670.1_2350987_2352079_+,NA|35aa|down_0|NC_021670.1_2352578_2352683_-,NA|31aa|down_2|NC_021670.1_2354794_2354887_+	NA|237aa|up_9|NC_021670.1_2342578_2343289_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_021670.1_2343409_2343853_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_021670.1_2344052_2344466_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_021670.1_2344923_2346297_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_021670.1_2346968_2347199_-	NA	NA|313aa|up_4|NC_021670.1_2347229_2348168_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_021670.1_2348602_2349268_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_021670.1_2349419_2349740_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_021670.1_2349741_2350722_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_021670.1_2350987_2352079_+	NA	NA|35aa|down_0|NC_021670.1_2352578_2352683_-	NA	NA|379aa|down_1|NC_021670.1_2353369_2354506_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NC_021670.1_2354794_2354887_+	NA	NA|286aa|down_3|NC_021670.1_2355591_2356449_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_021670.1_2356516_2357299_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NC_021670.1_2357530_2359336_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NC_021670.1_2360016_2361555_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NC_021670.1_2361589_2363722_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NC_021670.1_2363733_2364168_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NC_021670.1_2364167_2365274_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	11	2476076-2476269	2	CRT	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2476099-2476131|2476099-2476131|2476099-2476131|2476099-2476131|2476155-2476190|2476155-2476190|2476155-2476190|2476155-2476190|2476155-2476190|2476214-2476246|2476214-2476246|2476214-2476246|2476214-2476246	NC_021670.1_1303786-1303754|NC_021670.1_1395045-1395077|NC_021670.1_1604509-1604541|NC_021670.1_2751584-2751616|NC_021670.1_1604562-1604597|NC_021670.1_1957296-1957261|NC_021670.1_312247-312212|NC_021670.1_1771254-1771289|NC_021670.1_2124155-2124190|NC_021670.1_876292-876324|NC_021670.1_1395045-1395077|NC_021670.1_1604509-1604541|NC_021670.1_2751584-2751616	NA	3	3	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|55aa|up_9|NC_021670.1_2466603_2466768_+,NA|106aa|up_8|NC_021670.1_2467012_2467330_+,NA|84aa|up_5|NC_021670.1_2472454_2472706_+,NA|57aa|up_0|NC_021670.1_2475845_2476016_+,NA	NA|55aa|up_9|NC_021670.1_2466603_2466768_+	NA	NA|106aa|up_8|NC_021670.1_2467012_2467330_+	NA	NA|1056aa|up_7|NC_021670.1_2467516_2470684_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_021670.1_2470800_2472066_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_021670.1_2472454_2472706_+	NA	NA|255aa|up_4|NC_021670.1_2472697_2473462_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_021670.1_2473623_2474064_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_021670.1_2474056_2475268_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_021670.1_2475369_2475720_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_021670.1_2475845_2476016_+	NA	NA|341aa|down_0|NC_021670.1_2476410_2477433_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_021670.1_2477452_2478052_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_021670.1_2478058_2478292_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_021670.1_2478297_2478744_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_021670.1_2478757_2479243_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_021670.1_2479239_2480499_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_021670.1_2480561_2481056_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_021670.1_2481057_2481564_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_021670.1_2481594_2482599_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_021670.1_2482768_2483374_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000418345.1_ASM41834v1	NC_021670	Staphylococcus aureus, complete sequence	12	2974353-2974436	10	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2974379-2974410|2974379-2974410|2974379-2974410|2974379-2974410	NC_021670.1_876392-876423|NC_021670.1_876450-876481|NC_021670.1_1127245-1127276|NC_021670.1_1303742-1303711	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh	NA|64aa|up_7|NC_021670.1_2968304_2968496_+,NA|166aa|up_6|NC_021670.1_2969582_2970080_-,NA	NA|253aa|up_9|NC_021670.1_2965584_2966343_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|NC_021670.1_2966332_2968213_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|NC_021670.1_2968304_2968496_+	NA	NA|166aa|up_6|NC_021670.1_2969582_2970080_-	NA	NA|250aa|up_5|NC_021670.1_2970081_2970831_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_4|NC_021670.1_2970849_2971653_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NC_021670.1_2972136_2972337_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_021670.1_2972463_2973033_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NC_021670.1_2973285_2973681_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_021670.1_2973748_2974102_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NC_021670.1_2974654_2975494_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NC_021670.1_2975536_2976256_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NC_021670.1_2976255_2978133_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NC_021670.1_2978199_2979579_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NC_021670.1_2979722_2980076_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NC_021670.1_2980195_2980333_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
