The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021505	Pseudomonas putida NBRC 14164, complete genome	6156701	371081	421979	6156701	protease,holin,transposase	Bacillus_virus(20.0%)	42	NA	NA
WP_012270095.1|371081_372260_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.7	1.1e-24
WP_016484510.1|372256_373102_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_016497605.1|373186_374134_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_016497606.1|374587_375964_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_016497607.1|376456_377563_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_016497608.1|377682_377940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115283709.1|378360_380271_+	peptidase M72 family protein	NA	NA	NA	NA	NA
WP_016497611.1|380571_382152_+	peptidase M72	NA	NA	NA	NA	NA
WP_016497612.1|382251_382722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016497613.1|382732_383698_-	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_016497614.1|383716_384601_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_016497615.1|384724_385669_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_016497616.1|385815_386760_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_016497617.1|386887_387289_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_016497618.1|387573_388551_+	membrane dipeptidase	NA	NA	NA	NA	NA
WP_016497619.1|388628_389159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016497620.1|389174_391235_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_016497621.1|391442_393395_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_016497622.1|393394_394627_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_016484524.1|394637_395408_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_041167495.1|396224_397061_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA	NA
WP_016484527.1|397143_398436_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
WP_016497624.1|398744_399845_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
WP_016497625.1|399977_401603_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	44.3	1.7e-68
WP_016497626.1|401879_402110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016484532.1|402106_402409_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_016497627.1|402604_404542_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_016497628.1|404647_405688_-	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_016497629.1|406011_407265_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	8.6e-100
WP_016484536.1|407280_408531_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_016484537.1|408545_408881_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_016497630.1|408877_411892_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA	NA
WP_012270121.1|412071_412704_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA	NA
WP_016484540.1|412716_413574_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_016497631.1|413844_415044_+	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	28.7	1.5e-13
WP_080642752.1|415235_415997_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA	NA
WP_016497632.1|416191_416767_+	DUF2780 domain-containing protein	NA	NA	NA	NA	NA
WP_080642753.1|416843_417527_-	RHS repeat-associated core domain-containing protein	NA	B6SD27	Bacteriophage	50.6	2.8e-20
WP_016497634.1|417628_418978_-	amino acid permease	NA	NA	NA	NA	NA
WP_016497635.1|419209_420097_-	acyltransferase	NA	NA	NA	NA	NA
WP_016497636.1|420279_420780_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_016497637.1|421025_421979_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_021505	Pseudomonas putida NBRC 14164, complete genome	6156701	2037360	2046174	6156701	tRNA	uncultured_Caudovirales_phage(75.0%)	10	NA	NA
WP_016498861.1|2037360_2038641_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.1	1.0e-95
WP_016498862.1|2038641_2040033_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_016498863.1|2040162_2041122_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_041167993.1|2041216_2042218_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	81.1	2.1e-157
WP_016498865.1|2042229_2042565_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	75.7	4.9e-42
WP_016498866.1|2042561_2042858_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	63.6	2.3e-27
WP_016498867.1|2042857_2043217_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	65.0	2.5e-36
WP_016498868.1|2043218_2043611_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.8	6.5e-54
WP_016498869.1|2043785_2045165_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.6e-27
WP_003251184.1|2045502_2046174_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.0	2.1e-105
>prophage 3
NC_021505	Pseudomonas putida NBRC 14164, complete genome	6156701	2090114	2097019	6156701		Pseudomonas_phage(66.67%)	12	NA	NA
WP_016498916.1|2090114_2090573_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	67.5	8.4e-45
WP_016498917.1|2090569_2090794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016498918.1|2090793_2091168_+	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	78.9	1.1e-50
WP_016498919.1|2091223_2091724_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	79.9	1.1e-69
WP_016498920.1|2091736_2092078_+	hypothetical protein	NA	A0A2D1GNT5	Pseudomonas_phage	51.9	1.5e-22
WP_016498921.1|2092408_2092888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016498922.1|2092958_2093852_+	hypothetical protein	NA	A0A0U4JEA4	Pseudomonas_phage	48.0	4.6e-47
WP_016498923.1|2093848_2094733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016498924.1|2094759_2094957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016498925.1|2095310_2095673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016498926.1|2095974_2096337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016498927.1|2096593_2097019_-	type II toxin-antitoxin system HicB family antitoxin	NA	Q7Y3V7	Yersinia_phage	40.1	1.1e-19
>prophage 4
NC_021505	Pseudomonas putida NBRC 14164, complete genome	6156701	3935972	3971477	6156701	coat,protease	Feldmannia_species_virus(33.33%)	30	NA	NA
WP_016500508.1|3935972_3936941_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_016500509.1|3936937_3939235_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_016500510.1|3939343_3940120_-	molecular chaperone	NA	NA	NA	NA	NA
WP_016500511.1|3940159_3940663_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_016500512.1|3940666_3941200_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_016500513.1|3941218_3941755_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_041167793.1|3941785_3942313_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_016500515.1|3942581_3944828_+	GAF domain-containing protein	NA	B5LWN8	Feldmannia_species_virus	22.4	6.0e-27
WP_016500516.1|3944843_3945305_+	response regulator	NA	NA	NA	NA	NA
WP_016500517.1|3945318_3947706_+	response regulator	NA	Q8QNA2	Ectocarpus_siliculosus_virus	26.1	2.9e-11
WP_012271609.1|3948185_3948428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016500518.1|3948555_3949626_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_016500519.1|3949753_3951643_-	propionyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	29.5	2.8e-54
WP_016500520.1|3951822_3952689_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016500521.1|3952662_3953817_-	HPP family protein	NA	NA	NA	NA	NA
WP_016500522.1|3954100_3955420_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_016500523.1|3955416_3956085_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_016500524.1|3956085_3956400_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_016500525.1|3956399_3956708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016500526.1|3956945_3958025_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_012271598.1|3958079_3958436_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_151326450.1|3958446_3958929_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_041167795.1|3959335_3961945_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_016500529.1|3962018_3963503_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
WP_016500530.1|3963669_3964860_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA	NA
WP_016500531.1|3965010_3967599_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA	NA
WP_016500532.1|3967790_3968918_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_016485912.1|3969030_3969921_-	methylisocitrate lyase	NA	NA	NA	NA	NA
WP_016500533.1|3969917_3970634_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016500534.1|3970940_3971477_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
>prophage 5
NC_021505	Pseudomonas putida NBRC 14164, complete genome	6156701	5582950	5592235	6156701		Agrobacterium_phage(16.67%)	8	NA	NA
WP_016501865.1|5582950_5584156_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	35.4	1.0e-49
WP_016501866.1|5584159_5584987_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	47.0	7.8e-49
WP_016501867.1|5585100_5585550_-	azurin	NA	NA	NA	NA	NA
WP_016501868.1|5585899_5586487_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	24.4	5.2e-07
WP_041167906.1|5586622_5588923_-	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	94.6	7.5e-134
WP_016501870.1|5589124_5589388_-	DUF3077 domain-containing protein	NA	NA	NA	NA	NA
WP_016501871.1|5589813_5590761_+	hypothetical protein	NA	B6SD27	Bacteriophage	51.9	3.4e-16
WP_016501872.1|5590837_5592235_-	replicative DNA helicase	NA	O80281	Escherichia_phage	59.1	3.6e-147
>prophage 6
NC_021505	Pseudomonas putida NBRC 14164, complete genome	6156701	5816548	5822873	6156701		Microcystis_phage(16.67%)	8	NA	NA
WP_016502029.1|5816548_5818009_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	37.8	3.4e-63
WP_016502030.1|5818145_5818580_+	thioredoxin TrxC	NA	A0A0A7CHH9	Dinoroseobacter_phage	34.7	4.4e-11
WP_016502031.1|5818583_5818940_-	hypothetical protein	NA	A0A222YXG1	Escherichia_phage	59.8	2.7e-30
WP_016502032.1|5818929_5819238_-	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	47.4	4.2e-16
WP_016502033.1|5819306_5820080_-	ParA family protein	NA	NA	NA	NA	NA
WP_016502034.1|5820156_5821056_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.2	7.2e-08
WP_041167928.1|5821164_5822409_+	MFS transporter	NA	NA	NA	NA	NA
WP_016502036.1|5822525_5822873_-	NirD/YgiW/YdeI family stress tolerance protein	NA	A0A1I9LJU6	Stx_converting_phage	38.9	1.1e-09
