assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000412675.1_ASM41267v1	NC_021505	Pseudomonas putida NBRC 14164, complete genome	1	1031276-1031370	1	CRISPRCasFinder	no	csa3,DEDDh	WYL,DEDDh,csa3,cas3,DinG	Type I-A	CAGGTTGATGGCGGCAAGCTGGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA|101aa|down_7|NC_021505.1_1037843_1038146_+	NA|366aa|up_9|NC_021505.1_1018253_1019351_-	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown]	NA|355aa|up_8|NC_021505.1_1019353_1020418_-	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only]	NA|476aa|up_7|NC_021505.1_1020438_1021866_-	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion]	NA|446aa|up_6|NC_021505.1_1022143_1023481_-	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism]	NA|685aa|up_5|NC_021505.1_1023639_1025694_-	cd01948, EAL, EAL domain	NA|318aa|up_4|NC_021505.1_1025955_1026909_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|199aa|up_3|NC_021505.1_1027196_1027793_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|200aa|up_2|NC_021505.1_1028031_1028631_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|297aa|up_1|NC_021505.1_1028730_1029621_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|332aa|up_0|NC_021505.1_1029670_1030666_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|350aa|down_0|NC_021505.1_1031753_1032803_-	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	csa3|101aa|down_1|NC_021505.1_1032820_1033123_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|194aa|down_2|NC_021505.1_1033273_1033855_+	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown]	NA|263aa|down_3|NC_021505.1_1033987_1034776_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|252aa|down_4|NC_021505.1_1034775_1035531_-	COG3176, COG3176, Putative hemolysin [General function prediction only]	NA|296aa|down_5|NC_021505.1_1035688_1036576_+	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain	NA|361aa|down_6|NC_021505.1_1036764_1037847_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|101aa|down_7|NC_021505.1_1037843_1038146_+	NA	NA|194aa|down_8|NC_021505.1_1038190_1038772_+	smart00867, YceI, YceI-like domain	NA|386aa|down_9|NC_021505.1_1038773_1039931_+	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
GCF_000412675.1_ASM41267v1	NC_021505	Pseudomonas putida NBRC 14164, complete genome	2	1964580-1964653	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	TCATCACCTTTACGTTAACGTAAA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA|104aa|up_6|NC_021505.1_1956703_1957015_-,NA|64aa|down_2|NC_021505.1_1967874_1968066_-	NA|437aa|up_9|NC_021505.1_1953291_1954602_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|326aa|up_8|NC_021505.1_1954757_1955735_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|172aa|up_7|NC_021505.1_1955754_1956270_-	pfam16220, DUF4880, Domain of unknown function (DUF4880)	NA|104aa|up_6|NC_021505.1_1956703_1957015_-	NA	NA|218aa|up_5|NC_021505.1_1957145_1957799_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|219aa|up_4|NC_021505.1_1957844_1958501_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|651aa|up_3|NC_021505.1_1958837_1960790_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|272aa|up_2|NC_021505.1_1960786_1961602_-	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated	NA|536aa|up_1|NC_021505.1_1961605_1963213_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|388aa|up_0|NC_021505.1_1963232_1964396_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|561aa|down_0|NC_021505.1_1964716_1966399_+	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|287aa|down_1|NC_021505.1_1966598_1967459_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|64aa|down_2|NC_021505.1_1967874_1968066_-	NA	NA|54aa|down_3|NC_021505.1_1968209_1968371_-	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|673aa|down_4|NC_021505.1_1968510_1970529_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|1106aa|down_5|NC_021505.1_1970689_1974007_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|737aa|down_6|NC_021505.1_1974007_1976218_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|359aa|down_7|NC_021505.1_1976320_1977397_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|265aa|down_8|NC_021505.1_1977716_1978511_-	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|718aa|down_9|NC_021505.1_1978692_1980846_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX
GCF_000412675.1_ASM41267v1	NC_021505	Pseudomonas putida NBRC 14164, complete genome	3	2671007-2671104	3	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	TCCTTTGACGACCTGCCGGACGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA|89aa|up_9|NC_021505.1_2661533_2661800_-,NA|68aa|up_3|NC_021505.1_2668680_2668884_-,NA|134aa|up_2|NC_021505.1_2669395_2669797_+,NA|67aa|up_1|NC_021505.1_2669793_2669994_+,NA|294aa|up_0|NC_021505.1_2670114_2670996_+,NA|84aa|down_0|NC_021505.1_2674251_2674503_+,NA|187aa|down_1|NC_021505.1_2674495_2675056_+,NA|262aa|down_3|NC_021505.1_2676470_2677256_-,NA|131aa|down_4|NC_021505.1_2677284_2677677_+,NA|344aa|down_5|NC_021505.1_2677689_2678721_-,NA|461aa|down_6|NC_021505.1_2678857_2680240_-	NA|89aa|up_9|NC_021505.1_2661533_2661800_-	NA	NA|442aa|up_8|NC_021505.1_2662141_2663467_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|667aa|up_7|NC_021505.1_2663483_2665484_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|127aa|up_6|NC_021505.1_2665689_2666070_-	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|444aa|up_5|NC_021505.1_2666241_2667573_+	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|184aa|up_4|NC_021505.1_2667976_2668528_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|68aa|up_3|NC_021505.1_2668680_2668884_-	NA	NA|134aa|up_2|NC_021505.1_2669395_2669797_+	NA	NA|67aa|up_1|NC_021505.1_2669793_2669994_+	NA	NA|294aa|up_0|NC_021505.1_2670114_2670996_+	NA	NA|84aa|down_0|NC_021505.1_2674251_2674503_+	NA	NA|187aa|down_1|NC_021505.1_2674495_2675056_+	NA	NA|330aa|down_2|NC_021505.1_2675048_2676038_+	PRK04863, mukB, chromosome partition protein MukB	NA|262aa|down_3|NC_021505.1_2676470_2677256_-	NA	NA|131aa|down_4|NC_021505.1_2677284_2677677_+	NA	NA|344aa|down_5|NC_021505.1_2677689_2678721_-	NA	NA|461aa|down_6|NC_021505.1_2678857_2680240_-	NA	NA|92aa|down_7|NC_021505.1_2680636_2680912_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|231aa|down_8|NC_021505.1_2681133_2681826_+	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only]	NA|87aa|down_9|NC_021505.1_2681827_2682088_-	pfam10976, DUF2790, Protein of unknown function (DUF2790)
GCF_000412675.1_ASM41267v1	NC_021505	Pseudomonas putida NBRC 14164, complete genome	4	3883434-3883567	1	PILER-CR	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	CCGCACTTGCCTTCACCACACTTGCCCTC	29	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA|58aa|up_5|NC_021505.1_3878419_3878593_-,NA|361aa|down_8|NC_021505.1_3900870_3901953_+	NA|150aa|up_9|NC_021505.1_3876001_3876451_+	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|283aa|up_8|NC_021505.1_3876447_3877296_+	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed	NA|172aa|up_7|NC_021505.1_3877356_3877872_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|92aa|up_6|NC_021505.1_3877882_3878158_-	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|58aa|up_5|NC_021505.1_3878419_3878593_-	NA	NA|247aa|up_4|NC_021505.1_3878863_3879604_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|429aa|up_3|NC_021505.1_3879600_3880887_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|174aa|up_2|NC_021505.1_3881056_3881578_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|232aa|up_1|NC_021505.1_3881611_3882307_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|278aa|up_0|NC_021505.1_3882299_3883133_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|187aa|down_0|NC_021505.1_3883873_3884434_-	pfam13778, DUF4174, Domain of unknown function (DUF4174)	NA|1498aa|down_1|NC_021505.1_3884661_3889155_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|787aa|down_2|NC_021505.1_3893753_3896114_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|397aa|down_3|NC_021505.1_3896148_3897339_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|299aa|down_4|NC_021505.1_3897456_3898353_+	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|307aa|down_5|NC_021505.1_3898333_3899254_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|263aa|down_6|NC_021505.1_3899413_3900202_+	pfam08892, YqcI_YcgG, YqcI/YcgG family	NA|209aa|down_7|NC_021505.1_3900204_3900831_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|361aa|down_8|NC_021505.1_3900870_3901953_+	NA	NA|229aa|down_9|NC_021505.1_3902100_3902787_+	sd00010, SLR, Sel1-like repeat
GCF_000412675.1_ASM41267v1	NC_021505	Pseudomonas putida NBRC 14164, complete genome	5	4570888-4570967	4	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	TTCAGGCCTGTGGTGATCCTGTGGGA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|224aa|up_9|NC_021505.1_4559732_4560404_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|247aa|up_8|NC_021505.1_4560494_4561235_+	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional	NA|262aa|up_7|NC_021505.1_4561359_4562145_-	COG5424, COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]	NA|819aa|up_6|NC_021505.1_4562175_4564632_-	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|611aa|up_5|NC_021505.1_4564829_4566662_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|211aa|up_4|NC_021505.1_4566654_4567287_-	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|311aa|up_3|NC_021505.1_4567290_4568223_-	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|99aa|up_2|NC_021505.1_4568443_4568740_-	pfam01722, BolA, BolA-like protein	NA|175aa|up_1|NC_021505.1_4568750_4569275_-	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|465aa|up_0|NC_021505.1_4569429_4570824_+	PRK12425, PRK12425, class II fumarate hydratase	NA|321aa|down_0|NC_021505.1_4571001_4571964_-	pfam00892, EamA, EamA-like transporter family	NA|498aa|down_1|NC_021505.1_4572216_4573710_-	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase	NA|655aa|down_2|NC_021505.1_4573846_4575811_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|596aa|down_3|NC_021505.1_4576039_4577827_+	TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase	NA|582aa|down_4|NC_021505.1_4577830_4579576_+	TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103	NA|395aa|down_5|NC_021505.1_4579700_4580885_+	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family	NA|76aa|down_6|NC_021505.1_4580969_4581197_+	PRK00304, PRK00304, hypothetical protein; Provisional	NA|60aa|down_7|NC_021505.1_4581249_4581429_-	pfam02599, CsrA, Global regulator protein family	NA|51aa|down_8|NC_021505.1_4581719_4581872_+	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|270aa|down_9|NC_021505.1_4582025_4582835_-	PRK05650, PRK05650, SDR family oxidoreductase
