assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000408885.1_ASM40888v1	NC_021362	Bacillus paralicheniformis ATCC 9945a, complete sequence	1	57447-57528	1	CRISPRCasFinder	no	cas3	cas3,csa3,WYL,DinG,DEDDh	Unclear	TGCACGGGCGCATGCATTTGTAC	23	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|292aa|up_9|NC_021362.1_47828_48704_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|97aa|up_8|NC_021362.1_48753_49044_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|663aa|up_7|NC_021362.1_49551_51540_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|256aa|up_6|NC_021362.1_51623_52391_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|399aa|up_5|NC_021362.1_52635_53832_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|up_4|NC_021362.1_53999_54560_+	TIGR00334, Ribonuclease_M5, ribonuclease M5	NA|293aa|up_3|NC_021362.1_54552_55431_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|294aa|up_2|NC_021362.1_55590_56472_+	TIGR02855, Sporulation-specific_protease_YabG, sporulation peptidase YabG	NA|87aa|up_1|NC_021362.1_56696_56957_+	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|62aa|up_0|NC_021362.1_57113_57299_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|290aa|down_0|NC_021362.1_57594_58464_+	PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|278aa|down_1|NC_021362.1_58520_59354_+	PRK09213, PRK09213, pur operon repressor; Provisional	NA|126aa|down_2|NC_021362.1_59371_59749_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|98aa|down_3|NC_021362.1_59929_60223_+	PRK13259, PRK13259, septation regulator SpoVG	NA|457aa|down_4|NC_021362.1_60524_61895_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|317aa|down_5|NC_021362.1_61915_62866_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|209aa|down_6|NC_021362.1_62946_63573_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|189aa|down_7|NC_021362.1_63689_64256_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|77aa|down_8|NC_021362.1_64312_64543_+	pfam10955, DUF2757, Protein of unknown function (DUF2757)	cas3|1178aa|down_9|NC_021362.1_64607_68141_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_000408885.1_ASM40888v1	NC_021362	Bacillus paralicheniformis ATCC 9945a, complete sequence	2	897415-902123	1	CRT	no	csa3	cas3,csa3,WYL,DinG,DEDDh	Type I-A	ACNGGNCCAACNGGNGCNAC	20	1	1	900945-900987	NC_021362.1_895803-895845	NA	63	63	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|52aa|up_9|NC_021362.1_884873_885029_-,NA	NA|52aa|up_9|NC_021362.1_884873_885029_-	NA	NA|251aa|up_8|NC_021362.1_885112_885865_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|654aa|up_7|NC_021362.1_885989_887951_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|126aa|up_6|NC_021362.1_888213_888591_+	pfam09350, DUF1992, Domain of unknown function (DUF1992)	NA|471aa|up_5|NC_021362.1_888661_890074_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|471aa|up_4|NC_021362.1_890262_891675_+	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|563aa|up_3|NC_021362.1_891747_893436_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|239aa|up_2|NC_021362.1_893457_894174_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|231aa|up_1|NC_021362.1_894279_894972_+	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|535aa|up_0|NC_021362.1_895098_896703_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|364aa|down_0|NC_021362.1_905076_906168_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|181aa|down_1|NC_021362.1_906164_906707_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|325aa|down_2|NC_021362.1_906724_907699_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|458aa|down_3|NC_021362.1_907765_909139_-	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|748aa|down_4|NC_021362.1_909292_911536_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|361aa|down_5|NC_021362.1_911729_912812_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|370aa|down_6|NC_021362.1_912933_914043_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|355aa|down_7|NC_021362.1_914039_915104_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|432aa|down_8|NC_021362.1_915189_916485_+	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase	NA|304aa|down_9|NC_021362.1_916566_917478_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]
GCF_000408885.1_ASM40888v1	NC_021362	Bacillus paralicheniformis ATCC 9945a, complete sequence	3	903268-904858	2	CRT	no		cas3,csa3,WYL,DinG,DEDDh	Orphan	CNACNGGNNCNACNGGNNCAACNGG	25	1	1	904787-904833	NC_021362.1_904823-904869	NA	23	23	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA,NA	NA|251aa|up_9|NC_021362.1_885112_885865_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|654aa|up_8|NC_021362.1_885989_887951_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|126aa|up_7|NC_021362.1_888213_888591_+	pfam09350, DUF1992, Domain of unknown function (DUF1992)	NA|471aa|up_6|NC_021362.1_888661_890074_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|471aa|up_5|NC_021362.1_890262_891675_+	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|563aa|up_4|NC_021362.1_891747_893436_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|239aa|up_3|NC_021362.1_893457_894174_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|231aa|up_2|NC_021362.1_894279_894972_+	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|535aa|up_1|NC_021362.1_895098_896703_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|1875aa|up_0|NC_021362.1_896928_902553_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|364aa|down_0|NC_021362.1_905076_906168_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|181aa|down_1|NC_021362.1_906164_906707_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|325aa|down_2|NC_021362.1_906724_907699_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|458aa|down_3|NC_021362.1_907765_909139_-	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|748aa|down_4|NC_021362.1_909292_911536_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|361aa|down_5|NC_021362.1_911729_912812_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|370aa|down_6|NC_021362.1_912933_914043_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|355aa|down_7|NC_021362.1_914039_915104_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|432aa|down_8|NC_021362.1_915189_916485_+	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase	NA|304aa|down_9|NC_021362.1_916566_917478_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]
GCF_000408885.1_ASM40888v1	NC_021362	Bacillus paralicheniformis ATCC 9945a, complete sequence	4	2265803-2265901	2	CRISPRCasFinder	no	WYL,csa3	cas3,csa3,WYL,DinG,DEDDh	Type I-A	TCAGGCAGCGATTCTTTTAGCGTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DinG,DEDDh	NA|170aa|up_6|NC_021362.1_2259123_2259633_+,NA|327aa|down_2|NC_021362.1_2268342_2269323_-,NA|174aa|down_8|NC_021362.1_2275865_2276387_-	NA|158aa|up_9|NC_021362.1_2257200_2257674_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|95aa|up_8|NC_021362.1_2257670_2257955_-	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain	WYL|312aa|up_7|NC_021362.1_2258008_2258944_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|170aa|up_6|NC_021362.1_2259123_2259633_+	NA	csa3|111aa|up_5|NC_021362.1_2259673_2260006_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|135aa|up_4|NC_021362.1_2261056_2261461_-	pfam17452, YnfE, Uncharacterized protein YnfE	NA|446aa|up_3|NC_021362.1_2261460_2262798_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|233aa|up_2|NC_021362.1_2262840_2263539_+	cd16891, CwlT-like, CwlT-like N-terminal lysozyme domain and similar domains	NA|329aa|up_1|NC_021362.1_2263672_2264659_-	pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein	NA|216aa|up_0|NC_021362.1_2264697_2265345_-	pfam08795, DUF1796, Putative papain-like cysteine peptidase (DUF1796)	NA|406aa|down_0|NC_021362.1_2266269_2267487_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|178aa|down_1|NC_021362.1_2267656_2268190_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|327aa|down_2|NC_021362.1_2268342_2269323_-	NA	NA|170aa|down_3|NC_021362.1_2269553_2270063_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|322aa|down_4|NC_021362.1_2270107_2271073_+	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7	NA|530aa|down_5|NC_021362.1_2271104_2272694_-	PRK10484, PRK10484, putative transporter; Provisional	NA|270aa|down_6|NC_021362.1_2272854_2273664_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|594aa|down_7|NC_021362.1_2273900_2275682_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|174aa|down_8|NC_021362.1_2275865_2276387_-	NA	NA|76aa|down_9|NC_021362.1_2276800_2277028_+	pfam14070, YjfB_motility, Putative motility protein
