assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000392475.3_ASM39247v3	NC_021216	Helicobacter pylori UM299, complete sequence	1	463103-463200	1	CRISPRCasFinder	no		cas3,DEDDh,cas14j	Orphan	CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGC	35	1	1	463138-463165	NC_021216.3_463012-463039	NA	1	1	Orphan	cas3,DEDDh,cas14j	NA|99aa|up_4|NC_021216.3_455164_455461_+,NA|89aa|down_8|NC_021216.3_475278_475545_-,NA|101aa|down_9|NC_021216.3_475545_475848_-	NA|306aa|up_9|NC_021216.3_449809_450727_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|621aa|up_8|NC_021216.3_450986_452849_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_7|NC_021216.3_452879_453455_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NC_021216.3_453454_454285_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NC_021216.3_454504_455143_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NC_021216.3_455164_455461_+	NA	NA|628aa|up_3|NC_021216.3_455487_457371_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NC_021216.3_457433_458978_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NC_021216.3_459144_461355_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|309aa|up_0|NC_021216.3_461347_462274_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|813aa|down_0|NC_021216.3_463803_466242_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|613aa|down_1|NC_021216.3_466597_468436_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_2|NC_021216.3_468432_469044_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_3|NC_021216.3_469024_469219_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_4|NC_021216.3_469313_469664_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_5|NC_021216.3_469863_470724_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|544aa|down_6|NC_021216.3_471228_472860_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]	NA|808aa|down_7|NC_021216.3_472862_475286_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|89aa|down_8|NC_021216.3_475278_475545_-	NA	NA|101aa|down_9|NC_021216.3_475545_475848_-	NA
GCF_000392475.3_ASM39247v3	NC_021216	Helicobacter pylori UM299, complete sequence	2	905638-905736	2	CRISPRCasFinder	no		cas3,DEDDh,cas14j	Orphan	AAGTTTTTATTTTTGGGAGGGTTTGAT	27	1	3	905665-905709|905665-905709|905665-905709	NC_021216.3_577394-577438|NC_021216.3_905588-905632|NC_021216.3_1242750-1242794	NA	1	1	Orphan	cas3,DEDDh,cas14j	NA,NA|154aa|down_8|NC_021216.3_915458_915920_+	NA|327aa|up_9|NC_021216.3_893080_894061_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|349aa|up_8|NC_021216.3_895844_896891_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|201aa|up_7|NC_021216.3_896899_897502_+	smart00287, SH3b, Bacterial SH3 domain homologues	NA|264aa|up_6|NC_021216.3_897509_898301_+	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|645aa|up_5|NC_021216.3_898300_900235_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|341aa|up_4|NC_021216.3_900224_901247_+	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated	NA|147aa|up_3|NC_021216.3_901389_901830_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|182aa|up_2|NC_021216.3_901839_902385_+	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|86aa|up_1|NC_021216.3_902407_902665_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|684aa|up_0|NC_021216.3_903451_905503_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|77aa|down_0|NC_021216.3_906073_906304_-	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|848aa|down_1|NC_021216.3_906424_908968_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|191aa|down_2|NC_021216.3_908969_909542_+	PRK04056, PRK04056, septum formation inhibitor Maf	NA|335aa|down_3|NC_021216.3_909995_911000_-	PRK13287, amiF, formamidase; Provisional	NA|376aa|down_4|NC_021216.3_911166_912294_-	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|184aa|down_5|NC_021216.3_912293_912845_-	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_6|NC_021216.3_912923_914171_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|299aa|down_7|NC_021216.3_914174_915071_-	pfam00892, EamA, EamA-like transporter family	NA|154aa|down_8|NC_021216.3_915458_915920_+	NA	NA|381aa|down_9|NC_021216.3_915944_917087_-	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase
GCF_000392475.3_ASM39247v3	NC_021216	Helicobacter pylori UM299, complete sequence	3	1242800-1242898	3	CRISPRCasFinder	no		cas3,DEDDh,cas14j	Orphan	AAGTTTTTATTTTTGGGAGGGTTTGAT	27	1	3	1242827-1242871|1242827-1242871|1242827-1242871	NC_021216.3_577394-577438|NC_021216.3_905588-905632|NC_021216.3_1242750-1242794	NA	1	1	Orphan	cas3,DEDDh,cas14j	NA,NA|126aa|down_0|NC_021216.3_1243188_1243566_+,NA|615aa|down_9|NC_021216.3_1254378_1256223_+	NA|606aa|up_9|NC_021216.3_1229371_1231189_-	PRK05841, flgE, flagellar hook protein FlgE; Validated	NA|317aa|up_8|NC_021216.3_1231185_1232136_-	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|527aa|up_7|NC_021216.3_1232186_1233767_-	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|522aa|up_6|NC_021216.3_1234000_1235566_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|384aa|up_5|NC_021216.3_1235583_1236735_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|100aa|up_4|NC_021216.3_1236800_1237100_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|243aa|up_3|NC_021216.3_1237341_1238070_+	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|79aa|up_2|NC_021216.3_1238069_1238306_+	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|371aa|up_1|NC_021216.3_1238333_1239446_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|742aa|up_0|NC_021216.3_1240439_1242665_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|126aa|down_0|NC_021216.3_1243188_1243566_+	NA	NA|89aa|down_1|NC_021216.3_1243546_1243813_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|175aa|down_2|NC_021216.3_1243917_1244442_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|283aa|down_3|NC_021216.3_1244582_1245431_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|327aa|down_4|NC_021216.3_1245423_1246404_+	pfam01032, FecCD, FecCD transport family	NA|256aa|down_5|NC_021216.3_1246403_1247171_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|1324aa|down_6|NC_021216.3_1247232_1251204_-	pfam02691, VacA, Vacuolating cyotoxin	NA|466aa|down_7|NC_021216.3_1251427_1252825_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|487aa|down_8|NC_021216.3_1252825_1254286_-	pfam03023, MVIN, MviN-like protein	NA|615aa|down_9|NC_021216.3_1254378_1256223_+	NA
