The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	538905	544936	4791958		Salmonella_virus(50.0%)	6	NA	NA
WP_106417237.1|538905_539052_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	73.9	1.1e-14
WP_106417236.1|539067_539211_+	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	87.8	9.0e-14
WP_000400611.1|540200_542123_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.2	5.6e-300
WP_000703599.1|542139_542394_-	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_001682026.1|542362_542752_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	91.5	6.9e-56
WP_000377769.1|543994_544936_-	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	88.2	2.4e-147
>prophage 2
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	779445	788616	4791958	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|779445_780393_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824854.1|780376_781108_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|781088_781196_-	protein YohO	NA	NA	NA	NA	NA
WP_001240415.1|781255_781987_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272852.1|782209_783895_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	6.9e-278
WP_000598634.1|783891_784611_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950423.1|784657_785125_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	91.0	1.4e-74
WP_001197951.1|785181_785712_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|785883_786342_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195339.1|786582_788616_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	864507	875014	4791958		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111852.1|864507_865911_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
WP_000981469.1|866088_866982_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|867358_868444_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_001023656.1|868443_869343_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
WP_000857536.1|869390_870269_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
WP_000973711.1|870269_870821_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
WP_000018220.1|870826_871801_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|871816_872590_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565909.1|872594_873674_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
WP_000126347.1|873700_875014_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	981316	988550	4791958		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|981316_981736_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457648.1|981738_983007_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
WP_000208507.1|983452_983665_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
WP_024131163.1|983675_983864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080666.1|984124_985309_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
WP_000107435.1|985959_986271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377043.1|986350_987046_+	phosphohydrolase	NA	S4W232	Pandoravirus	27.5	2.1e-07
WP_001157299.1|987119_988550_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	1192444	1196856	4791958		Escherichia_phage(50.0%)	6	NA	NA
WP_000281950.1|1192444_1192858_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
WP_001766395.1|1192874_1193603_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
WP_000158843.1|1193794_1194337_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|1194484_1194862_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|1194934_1195744_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_000497459.1|1196616_1196856_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
>prophage 6
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	1377892	1451018	4791958	protease,plate,tRNA,transposase,capsid,tail,integrase,holin	Burkholderia_virus(39.02%)	87	1416912:1416928	1449926:1449942
WP_000168626.1|1377892_1379167_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
WP_000765713.1|1379915_1380521_-	glutathione transferase GstA	NA	NA	NA	NA	NA
WP_000100913.1|1380625_1382131_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA	NA
WP_001030324.1|1382731_1383367_-	endonuclease III	NA	NA	NA	NA	NA
WP_001289628.1|1383366_1384059_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_000920820.1|1384061_1384682_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_000231887.1|1384685_1385744_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_000915581.1|1385744_1387766_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_001092600.1|1387758_1388337_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_000133179.1|1388336_1388918_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_000214061.1|1388994_1389435_-	DUF2569 domain-containing protein	NA	NA	NA	NA	NA
WP_000217946.1|1389523_1389739_-	transcription modulator YdgT	NA	NA	NA	NA	NA
WP_031608772.1|1390037_1390163_-	division septum protein Blr	NA	NA	NA	NA	NA
WP_000998242.1|1390370_1391411_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000565566.1|1391484_1392486_-	adenosine deaminase	NA	NA	NA	NA	NA
WP_000753325.1|1393191_1394700_-	YdgA family protein	NA	NA	NA	NA	NA
WP_001170615.1|1394802_1395978_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_015606145.1|1396177_1397824_+	class I fumarate hydratase	NA	NA	NA	NA	NA
WP_000259129.1|1397991_1399395_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000092483.1|1399391_1400321_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
WP_001681605.1|1400396_1401698_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
WP_000928668.1|1401808_1403515_-	amidohydrolase	NA	NA	NA	NA	NA
WP_000824321.1|1403667_1404819_-	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
WP_001080045.1|1405299_1406031_-	two-component system response regulator RstA	NA	NA	NA	NA	NA
WP_000524877.1|1406157_1406493_+	GlpM family protein	NA	NA	NA	NA	NA
WP_000412353.1|1406554_1407937_-	amino acid permease	NA	NA	NA	NA	NA
WP_001165548.1|1408217_1408790_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
WP_024131173.1|1408861_1409335_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	53.0	4.3e-36
WP_001802272.1|1409345_1409849_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	54.0	2.3e-43
WP_001057643.1|1409848_1410466_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
WP_024131174.1|1410472_1410949_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	56.4	1.9e-44
WP_000002046.1|1410959_1411985_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
WP_000852584.1|1411987_1412566_-|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
WP_001219103.1|1412558_1413662_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
WP_000859114.1|1413652_1414000_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
WP_000148263.1|1414056_1414584_-|plate	phage baseplate assembly protein V	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
WP_000808000.1|1414580_1415735_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
WP_000478221.1|1415722_1415935_-|tail	tail protein X	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
WP_000458383.1|1415934_1416819_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	47.0	7.5e-50
WP_000135574.1|1416818_1419284_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	2.2e-168
1416912:1416928	attL	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_001148841.1|1419377_1419515_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_000084228.1|1419459_1419795_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000110118.1|1419892_1420174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162828734.1|1420176_1420701_-|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	67.2	4.7e-68
WP_000729859.1|1420697_1422125_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
WP_000666498.1|1422114_1422366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001101804.1|1422365_1422830_-	Gp37 family protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
WP_000271668.1|1422829_1423276_-	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
WP_000537457.1|1423277_1423616_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_001286905.1|1423625_1424579_-	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
WP_001273072.1|1424593_1425709_-	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
WP_000135517.1|1425923_1426382_-	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
WP_000117561.1|1426384_1427206_-|capsid	minor capsid protein	capsid	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
WP_000090679.1|1427186_1428683_-	DUF935 domain-containing protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
WP_170825686.1|1428682_1430224_-	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.0e-184
WP_000124060.1|1430274_1430820_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
WP_015606146.1|1430819_1431131_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	2.1e-31
WP_000175097.1|1431130_1431457_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
WP_000264664.1|1431453_1432104_-	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
WP_001104436.1|1432087_1432816_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.4	2.7e-61
WP_000793143.1|1432818_1433169_-|holin	putative holin	holin	A4JWP3	Burkholderia_virus	53.0	4.5e-22
WP_100208317.1|1433412_1434009_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_001765083.1|1434004_1434436_+	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
WP_000567456.1|1434445_1434610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000990529.1|1434613_1436383_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
WP_000960673.1|1436393_1437560_+	AAA family ATPase	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
WP_000843446.1|1437562_1437832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140134.1|1437859_1438390_+	host-nuclease inhibitor Gam family protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
WP_000632575.1|1438678_1438951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197790.1|1438960_1439263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315283.1|1439259_1439643_+	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
WP_153781233.1|1439650_1439851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000131941.1|1439847_1440531_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
WP_000631816.1|1440527_1440758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989166.1|1440747_1440963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315282.1|1440955_1441405_+	regulatory protein GemA	NA	A4JWM5	Burkholderia_virus	46.6	9.4e-25
WP_001281695.1|1441376_1441766_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
WP_000769298.1|1441947_1442892_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001219360.1|1443418_1444948_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_000014056.1|1444958_1446347_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_001118268.1|1446521_1447556_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000500278.1|1447972_1448335_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA	NA
WP_001183821.1|1448321_1448651_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA	NA
WP_000549642.1|1448685_1449507_-|protease	serine protease	protease	NA	NA	NA	NA
WP_001766314.1|1449775_1450027_-	acid shock protein	NA	NA	NA	NA	NA
1449926:1449942	attR	GGCAGGCGCTGCGGTTT	NA	NA	NA	NA
WP_000431187.1|1450420_1450603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000502118.1|1450559_1451018_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	1894129	1972330	4791958	protease,plate,transposase,head,holin,tail,terminase	Salmonella_phage(70.0%)	92	NA	NA
WP_000938184.1|1894129_1894810_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.1	4.1e-80
WP_000502118.1|1895017_1895476_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000374046.1|1896139_1896799_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|1896885_1897215_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|1897211_1897493_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000502118.1|1898229_1898688_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000140485.1|1899819_1901031_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|1901088_1901406_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|1901450_1901864_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|1902037_1902700_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|1902794_1903253_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420526.1|1903288_1905343_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
WP_001261222.1|1905466_1905913_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950867.1|1905931_1908085_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202371.1|1908071_1908677_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|1908893_1909403_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_010989142.1|1909757_1910810_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877174.1|1910881_1911334_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156455.1|1911519_1913280_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|1913348_1913867_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001764860.1|1913966_1914134_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|1914387_1914951_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|1914947_1916588_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|1916592_1917846_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053045.1|1917860_1919768_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086472.1|1919780_1921889_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
WP_000224084.1|1921987_1923097_+	YcbX family protein	NA	NA	NA	NA	NA
WP_001220671.1|1923093_1923636_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291724.1|1923801_1924812_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193884.1|1925019_1927632_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
WP_000480169.1|1928648_1929350_+	DUF1076 domain-containing protein	NA	NA	NA	NA	NA
WP_000421106.1|1930271_1930790_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
WP_001681975.1|1930804_1932316_-	hypothetical protein	NA	S4TP62	Salmonella_phage	59.4	1.5e-111
WP_000049938.1|1932315_1932996_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
WP_001197092.1|1932992_1934192_-|plate	baseplate J/gp47 family protein	plate	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
WP_001270647.1|1934192_1934546_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
WP_001685627.1|1934786_1935542_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
WP_001144794.1|1935600_1936029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050472.1|1936028_1936760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000826019.1|1936954_1937290_-	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
WP_000042301.1|1937286_1938318_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
WP_000388505.1|1938320_1938623_-	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
WP_000346974.1|1938626_1939277_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
WP_000990867.1|1939276_1941229_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
WP_000389047.1|1941406_1941859_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
WP_000257259.1|1941862_1942303_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
WP_001135544.1|1942314_1943460_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
WP_000389379.1|1943463_1944027_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
WP_001142488.1|1944001_1944391_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
WP_000008737.1|1944377_1944932_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
WP_001125675.1|1944928_1945336_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
WP_001040702.1|1945301_1945670_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
WP_000627464.1|1945711_1946653_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
WP_000128060.1|1946664_1947162_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
WP_000873182.1|1947166_1948399_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
WP_138010671.1|1948413_1949151_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	88.1	7.8e-101
WP_000113511.1|1949035_1950505_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
WP_000204794.1|1950504_1951908_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
WP_001118118.1|1951873_1952626_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
WP_001070544.1|1952715_1952943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495544.1|1953039_1953417_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
WP_001050879.1|1953459_1953999_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
WP_001075998.1|1953995_1954610_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
WP_000226307.1|1954609_1954891_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294876.1|1954877_1955267_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
WP_000798706.1|1955483_1955933_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|1956068_1956194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047634.1|1956592_1957390_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|1957379_1957526_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096560.1|1957522_1958134_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
WP_000929790.1|1958342_1958945_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001217670.1|1959279_1959519_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
WP_000963896.1|1959703_1960201_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000509711.1|1960211_1960391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208073.1|1961287_1961809_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	68.0	1.2e-66
WP_000445792.1|1961812_1962286_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
WP_000065105.1|1962285_1962810_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
WP_000113623.1|1962806_1963154_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
WP_000800010.1|1963164_1963914_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_001681803.1|1963916_1964900_-	replication protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
WP_001574095.1|1964984_1965359_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000869365.1|1965324_1965561_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	98.7	1.1e-37
WP_001009036.1|1965690_1966095_+	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
WP_000186242.1|1966383_1966584_+	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000995349.1|1966674_1966971_+	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
WP_001764962.1|1966976_1967762_+	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
WP_000187053.1|1967758_1968439_+	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
WP_000034527.1|1968516_1969581_+	DGQHR domain-containing protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
WP_010989138.1|1969577_1970459_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
WP_001754984.1|1970464_1970704_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	96.2	9.7e-37
WP_000065276.1|1970744_1970993_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262313.1|1971037_1972330_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	5.0e-252
>prophage 8
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	2043455	2050767	4791958	protease,integrase	Ralstonia_phage(16.67%)	7	2038324:2038338	2049503:2049517
2038324:2038338	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_001539594.1|2043455_2043833_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
WP_001117984.1|2043994_2044192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934058.1|2044403_2046680_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
WP_000520789.1|2046710_2047031_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|2047354_2047576_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125880.1|2047705_2049652_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2049503:2049517	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
WP_001201759.1|2049648_2050767_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 9
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	2706364	2760158	4791958	integrase,tRNA,tail	Enterobacteria_phage(33.33%)	43	2728184:2728199	2739541:2739556
WP_000469802.1|2706364_2707132_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|2707176_2707725_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|2707743_2707992_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|2708335_2709697_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|2709862_2710654_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|2710673_2711960_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001682111.1|2712080_2712638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|2712719_2713310_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|2713433_2714312_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880973.1|2714397_2716059_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|2716207_2716546_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000884725.1|2716711_2717002_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|2716991_2717468_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|2717617_2718100_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237648.1|2718719_2729594_+	Ig-like domain repeat protein	NA	NA	NA	NA	NA
2728184:2728199	attL	CGCCAACACCACCGGC	NA	NA	NA	NA
WP_000533850.1|2729657_2731067_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196137.1|2731063_2733220_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_010989217.1|2733251_2734415_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000124721.1|2735033_2736233_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.6	4.8e-108
WP_001269066.1|2736267_2737014_-	hypothetical protein	NA	S5W9H2	Leptospira_phage	42.6	3.0e-07
WP_000868779.1|2737010_2737832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000446132.1|2738151_2738724_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	97.3	2.2e-95
WP_021038238.1|2738797_2739298_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_001283036.1|2739294_2740029_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	99.2	1.2e-130
2739541:2739556	attR	GCCGGTGGTGTTGGCG	NA	NA	NA	NA
WP_001149156.1|2740580_2740847_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	98.9	6.3e-45
WP_000980224.1|2740843_2741434_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	90.3	5.3e-60
WP_001244665.1|2741426_2741714_+	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	97.9	8.6e-48
WP_000459302.1|2741706_2742162_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	99.1	1.6e-64
WP_000856729.1|2742297_2742618_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_000783673.1|2742632_2744966_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	99.0	0.0e+00
WP_000151542.1|2745589_2746363_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_000380485.1|2746331_2746505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000972389.1|2746766_2746985_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
WP_001011760.1|2747075_2748176_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000980381.1|2748172_2748658_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001282796.1|2748654_2751732_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000763311.1|2751724_2751844_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001280897.1|2751858_2752161_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_001207656.1|2752215_2752731_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_015606174.1|2752740_2753913_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	89.7	6.6e-203
WP_015606175.1|2754055_2754622_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	85.7	5.4e-86
WP_001221113.1|2755305_2756421_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_001111827.1|2756501_2760158_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 10
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	3077593	3121296	4791958	protease,tRNA,transposase,bacteriocin	Bacillus_virus(33.33%)	46	NA	NA
WP_000502119.1|3077593_3078052_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000034386.1|3078241_3079321_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_000111274.1|3079422_3080586_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000218338.1|3080607_3081654_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000218564.1|3082027_3082453_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000124001.1|3082478_3083057_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000553254.1|3083057_3083765_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001775599.1|3083752_3084430_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000956919.1|3084423_3085080_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
WP_000502119.1|3085184_3085643_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_015606180.1|3085831_3087823_-	transketolase	NA	NA	NA	NA	NA
WP_000701830.1|3088098_3088857_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_000105550.1|3088957_3089878_-	agmatinase	NA	NA	NA	NA	NA
WP_001278580.1|3090105_3092082_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_000729109.1|3092090_3092222_-	acid stress response protein YqgB	NA	NA	NA	NA	NA
WP_077905074.1|3092355_3092520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001803086.1|3092516_3092816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062140.1|3092871_3094026_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
WP_015606181.1|3094518_3095913_+	galactose/proton symporter	NA	NA	NA	NA	NA
WP_000856775.1|3095991_3096489_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286121.1|3096584_3097292_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001800534.1|3097368_3098100_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593242.1|3098119_3099067_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053167.1|3099282_3099846_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_001285491.1|3099845_3100262_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000098333.1|3100308_3100995_-	global regulatory protein	NA	NA	NA	NA	NA
WP_001055657.1|3101124_3102105_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997790.1|3102122_3102827_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001094848.1|3102845_3103412_+	YggT family protein	NA	NA	NA	NA	NA
WP_001277205.1|3103408_3103699_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174773.1|3103706_3104300_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_001096530.1|3104292_3105429_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_000252198.1|3105519_3106527_-	DUF1202 domain-containing protein	NA	NA	NA	NA	NA
WP_000394189.1|3106659_3107706_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_000502119.1|3108024_3108483_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	NA	NA	NA	NA
WP_000984827.1|3108605_3109325_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107559.1|3109374_3109701_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786887.1|3109700_3110420_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001148958.1|3110574_3111627_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091706.1|3111654_3111930_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_000976287.1|3112042_3113128_+	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
WP_001049802.1|3113344_3114601_+	nucleoside permease	NA	NA	NA	NA	NA
WP_000234466.1|3117211_3117919_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001141622.1|3120194_3120512_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000768134.1|3120508_3120775_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_000421096.1|3121017_3121296_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 11
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	3498617	3536675	4791958	plate,head,transposase,capsid,lysis,integrase,portal,tail,terminase	Salmonella_phage(78.57%)	48	3493581:3493595	3505747:3505761
3493581:3493595	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
WP_015606213.1|3498617_3500264_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.3	2.6e-64
WP_001311244.1|3500403_3500502_-	ilv operon leader peptide	NA	NA	NA	NA	NA
WP_000290950.1|3501127_3502180_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_000900883.1|3502368_3502560_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047327.1|3502575_3503145_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
WP_001247706.1|3503270_3503492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460893.1|3503524_3504034_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
WP_000956176.1|3504041_3504338_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_000996717.1|3504455_3504797_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244218.1|3504864_3505098_+	DUF2732 domain-containing protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
WP_000752613.1|3505097_3505325_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_015606214.1|3505321_3506179_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	96.8	1.7e-160
3505747:3505761	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
WP_000017503.1|3506175_3508590_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
WP_001580533.1|3508743_3508932_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
WP_000822803.1|3508999_3509299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251692.1|3509407_3510286_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	49.4	6.1e-52
WP_001146827.1|3510899_3511814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015606215.1|3511810_3512551_+	HIRAN domain-containing protein	NA	NA	NA	NA	NA
WP_000518064.1|3512585_3513623_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
WP_001098422.1|3513622_3515389_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
WP_000216244.1|3515531_3516365_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
WP_000742518.1|3516381_3517440_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
WP_000059191.1|3517443_3518094_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
WP_000673504.1|3518189_3518654_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.0	1.4e-76
WP_015606216.1|3518653_3518857_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	91.0	3.0e-31
WP_000171568.1|3518860_3519076_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
WP_001069905.1|3519056_3519569_+	lysozyme	NA	E5G6N1	Salmonella_phage	92.3	3.1e-88
WP_000727853.1|3519570_3519948_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
WP_001080928.1|3519944_3520373_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	77.3	2.2e-47
WP_001039939.1|3520468_3520900_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
WP_000829146.1|3520892_3521339_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
WP_000993754.1|3521407_3521986_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
WP_000177595.1|3521982_3522342_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
WP_000268271.1|3522328_3523237_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
WP_001086816.1|3523229_3523835_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000104804.1|3523831_3525346_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
WP_000805568.1|3525345_3525939_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
WP_001174915.1|3525910_3526351_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
WP_015606217.1|3526779_3527346_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	85.7	5.4e-86
WP_015606174.1|3527488_3528661_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	89.7	6.6e-203
WP_001207656.1|3528670_3529186_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
WP_001280897.1|3529240_3529543_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
WP_000763311.1|3529557_3529677_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
WP_001282796.1|3529669_3532747_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.1	0.0e+00
WP_000980381.1|3532743_3533229_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
WP_001011760.1|3533225_3534326_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
WP_000972391.1|3534416_3534635_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_015606219.1|3536216_3536675_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NC_021176	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a, complete sequence	4791958	4419985	4512600	4791958	plate,head,lysis,capsid,integrase,portal,tail,terminase	Salmonella_phage(81.63%)	102	4421158:4421174	4517830:4517846
WP_000089603.1|4419985_4421137_+|integrase	site-specific integrase	integrase	B5WZU7	Pseudomonas_phage	44.8	6.3e-49
4421158:4421174	attL	GTCATTTACGTGATTTA	NA	NA	NA	NA
WP_000455463.1|4421233_4421701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000994659.1|4421912_4422788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001149494.1|4422975_4423338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214158.1|4423294_4424209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001768408.1|4424227_4424968_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000013624.1|4424946_4425633_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000253629.1|4425668_4426169_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000626967.1|4426178_4426748_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_015606326.1|4426767_4428858_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_010989289.1|4428854_4429613_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000252871.1|4429849_4430104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251281.1|4430103_4430343_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000949576.1|4430372_4430735_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
WP_000848326.1|4430744_4431119_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA	NA
WP_000086082.1|4431115_4431769_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_015606328.1|4432657_4434136_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000244536.1|4434122_4434572_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA	NA
WP_000054770.1|4437562_4437949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821941.1|4438103_4438496_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000838927.1|4438492_4439461_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_041030945.1|4439475_4440906_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_000213770.1|4441238_4442744_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_015606331.1|4442982_4444230_+	phosphoadenosine phosphosulfate reductase	NA	A0A1B0WNC0	Flavobacterium_phage	30.6	1.8e-28
WP_000502502.1|4444214_4444856_+	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	53.7	1.1e-55
WP_010989295.1|4445066_4445609_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_000907593.1|4446874_4447795_+|integrase	integrase domain-containing protein	integrase	NA	NA	NA	NA
WP_001020123.1|4448518_4448821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103837.1|4448916_4449297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018145.1|4449667_4449877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000979718.1|4449894_4450347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000968700.1|4450343_4450640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000115421.1|4450717_4451176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015606332.1|4451264_4453214_+	DUF1738 domain-containing protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
WP_000881183.1|4453285_4454194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022217.1|4454267_4455167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000911568.1|4455241_4455568_+	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001222413.1|4455667_4455937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015606333.1|4456068_4457343_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	61.8	4.9e-151
WP_001039750.1|4457561_4457939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001775272.1|4458025_4458244_-	ogr/Delta-like zinc finger family protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
WP_001011750.1|4458311_4459412_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
WP_000980405.1|4459408_4459894_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
WP_001282813.1|4459893_4462674_-|tail	phage tail tape measure protein	tail	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
WP_000763315.1|4462666_4462786_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	94.9	1.2e-14
WP_001280965.1|4462800_4463103_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
WP_001207653.1|4463157_4463673_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_015606334.1|4463682_4464855_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.2	1.1e-221
WP_015606335.1|4464957_4465176_-	Hin recombinase	NA	A0A1S6L009	Salmonella_phage	88.9	4.0e-29
WP_000161708.1|4465389_4466112_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_000006337.1|4466309_4466717_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_000104806.1|4466723_4468343_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
WP_001086816.1|4468339_4468945_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
WP_000268327.1|4468937_4469846_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.0	5.2e-155
WP_000177408.1|4469832_4470192_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
WP_000993749.1|4470188_4470767_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000343944.1|4470835_4471282_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
WP_001039966.1|4471274_4471706_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
WP_024131238.1|4471801_4472230_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	97.9	3.3e-67
WP_000731034.1|4472226_4472604_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
WP_001097942.1|4472608_4473118_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.0	1.3e-91
WP_000171566.1|4473098_4473314_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
WP_015606336.1|4473317_4473521_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	97.0	9.4e-33
WP_000673540.1|4473520_4473985_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
WP_015606337.1|4474078_4474729_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	99.1	7.1e-114
WP_000730751.1|4474732_4475797_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
WP_000216272.1|4475813_4476647_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
WP_001098453.1|4476789_4478556_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
WP_001681813.1|4478555_4479599_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
WP_000080839.1|4479647_4480343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789323.1|4480362_4481427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000829584.1|4481423_4482488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000835188.1|4482497_4482716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217561.1|4482811_4483045_-	DinI family protein	NA	A0A1S6L014	Salmonella_phage	92.2	2.2e-33
WP_001154438.1|4483056_4483245_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	96.8	7.9e-26
WP_000301193.1|4483412_4485821_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	95.1	0.0e+00
WP_000104130.1|4485811_4486672_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
WP_001090717.1|4486668_4487253_-	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
WP_000785510.1|4487249_4487477_-	TraR/DksA family transcriptional regulator	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
WP_001244240.1|4487476_4487710_-	DUF2732 domain-containing protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
WP_000963479.1|4487777_4488119_-	DUF5347 domain-containing protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
WP_000956167.1|4488082_4488283_-	DUF2724 domain-containing protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
WP_000460852.1|4488290_4488800_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
WP_000102106.1|4488832_4489075_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_000052560.1|4489191_4489824_+	helix-turn-helix domain-containing protein	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
WP_000027757.1|4489827_4490853_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
WP_001681810.1|4491959_4492217_+	YjhX family toxin	NA	NA	NA	NA	NA
WP_001681808.1|4492227_4493118_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000354257.1|4493117_4493864_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_015606338.1|4494165_4496136_-	Vi polysaccharide transport protein VexE	NA	NA	NA	NA	NA
WP_015606339.1|4496155_4497460_-	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA	NA
WP_000467404.1|4497482_4498178_-	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA	NA
WP_001023498.1|4498203_4498998_-	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA	NA
WP_000720235.1|4499007_4500075_-	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA	NA
WP_015606340.1|4500119_4501856_-	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA	NA
WP_010989299.1|4501855_4504351_-	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA	NA
WP_000127915.1|4504374_4505421_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
WP_000466893.1|4505423_4506701_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
WP_001210944.1|4506945_4507485_-	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA	NA
WP_001120833.1|4508338_4509850_+	ATP-dependent helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
WP_015606341.1|4509833_4511423_+	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_000449622.1|4511586_4512600_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
4517830:4517846	attR	TAAATCACGTAAATGAC	NA	NA	NA	NA
